Wall clock time and date at job start Mon Mar 30 2020 00:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47507 * 2 1 4 4 C 1.46504 * 119.99878 * 75.60664 * 3 2 1 5 5 C 1.52997 * 109.47176 * 90.00241 * 4 3 2 6 6 N 1.46507 * 109.46773 * 179.97438 * 5 4 3 7 7 C 1.36937 * 119.99299 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00484 * 0.02562 * 7 6 5 9 9 C 1.38821 * 119.99278 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99559 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47103 * 269.99750 * 11 9 7 13 13 H 1.48499 * 109.47032 * 150.00128 * 11 9 7 14 14 H 1.48490 * 109.47263 * 29.99816 * 11 9 7 15 15 C 1.34772 * 120.00021 * 255.60735 * 3 2 1 16 16 O 1.21288 * 119.99930 * 183.55631 * 15 3 2 17 17 C 1.50697 * 120.00348 * 3.55394 * 15 3 2 18 18 C 1.52997 * 119.30135 * 266.63525 * 17 15 3 19 19 C 1.52997 * 60.37885 * 248.68665 * 18 17 15 20 20 H 1.09009 * 119.75428 * 111.11644 * 19 18 17 21 21 C 1.54261 * 118.20061 * 266.38238 * 19 18 17 22 22 C 1.54897 * 104.19742 * 87.78758 * 21 19 18 23 23 C 1.54274 * 117.41077 * 62.28444 * 17 15 3 24 24 H 1.08992 * 109.47258 * 292.09625 * 1 2 3 25 25 H 1.09003 * 109.46382 * 52.09324 * 1 2 3 26 26 H 1.09001 * 109.47125 * 172.08655 * 1 2 3 27 27 H 1.08998 * 109.47421 * 239.99228 * 2 1 3 28 28 H 1.09009 * 109.46864 * 119.99818 * 2 1 3 29 29 H 1.08997 * 109.47192 * 329.99774 * 4 3 2 30 30 H 1.09010 * 109.46633 * 210.00158 * 4 3 2 31 31 H 1.09004 * 109.47303 * 60.00030 * 5 4 3 32 32 H 1.08996 * 109.47035 * 299.99476 * 5 4 3 33 33 H 0.96996 * 119.99805 * 0.02562 * 6 5 4 34 34 H 0.97001 * 120.00222 * 0.02562 * 10 9 7 35 35 H 1.09000 * 117.46217 * 356.28500 * 18 17 15 36 36 H 1.09000 * 117.46552 * 141.09201 * 18 17 15 37 37 H 1.09001 * 110.48926 * 206.46364 * 21 19 18 38 38 H 1.09004 * 110.48973 * 328.97660 * 21 19 18 39 39 H 1.08991 * 110.75529 * 80.37229 * 22 21 19 40 40 H 1.08997 * 110.75246 * 203.56257 * 22 21 19 41 41 H 1.08998 * 110.48771 * 235.05264 * 23 17 15 42 42 H 1.09005 * 110.48362 * 357.69326 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.9653 2.1769 1.2290 5 6 3.2641 1.9881 2.0153 6 7 3.2111 2.7844 3.2440 7 6 4.2691 2.7729 4.1132 8 1 5.1427 2.1774 3.8929 9 6 4.2187 3.5270 5.2777 10 7 3.1543 4.2532 5.5459 11 14 5.6622 3.5121 6.4632 12 1 5.4766 2.4230 7.4556 13 1 5.7371 4.8168 7.1685 14 1 6.9205 3.2846 5.7082 15 6 2.5166 1.9197 -1.1305 16 8 2.9801 3.0404 -1.1153 17 6 2.4978 1.1295 -2.4136 18 6 3.7223 0.2966 -2.7980 19 6 3.3644 1.5379 -3.6177 20 1 4.0096 2.4158 -3.5798 21 6 2.4881 1.3543 -4.8739 22 6 1.0365 1.4459 -4.3411 23 6 1.1204 0.7256 -2.9788 24 1 -0.3633 0.3865 0.9521 25 1 -0.3632 0.6314 -0.8109 26 1 -0.3633 -1.0179 -0.1415 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.1216 1.8504 1.8370 30 1 1.8441 3.2300 0.9749 31 1 4.1077 2.3146 1.4072 32 1 3.3852 0.9351 2.2693 33 1 2.4263 3.3189 3.4419 34 1 2.4049 4.2613 4.9301 35 1 4.5957 0.3576 -2.1487 36 1 3.5448 -0.6764 -3.2559 37 1 2.6812 2.1499 -5.5935 38 1 2.6696 0.3795 -5.3266 39 1 0.7415 2.4857 -4.2008 40 1 0.3456 0.9372 -5.0134 41 1 1.0714 -0.3527 -3.1301 42 1 0.3231 1.0549 -2.3124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716230938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:20 Heat of formation + Delta-G solvation = -0.853316 kcal Electronic energy + Delta-G solvation = -20800.482396 eV Core-core repulsion = 17781.460375 eV Total energy + Delta-G solvation = -3019.022020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79053 -38.41595 -36.19272 -34.79309 -31.98945 -31.81873 -30.22644 -28.93931 -27.32479 -24.02205 -23.59956 -22.84534 -22.16308 -21.07720 -20.35586 -18.35705 -17.28657 -17.11015 -16.18389 -15.55575 -15.21907 -14.76025 -14.20664 -13.95441 -13.67560 -13.64461 -13.52666 -13.46130 -13.24055 -12.88790 -12.54716 -12.15569 -11.85743 -11.48036 -11.38244 -11.34215 -11.21976 -10.99101 -10.90966 -10.59849 -10.54245 -10.52316 -9.99237 -9.88930 -9.52600 -9.19952 -8.84055 -8.50586 -6.97320 -6.06987 -3.06423 2.65992 2.99814 3.39022 3.54375 3.60118 3.74176 4.16460 4.40711 4.44651 4.56183 4.72265 4.86394 4.97178 5.08893 5.13823 5.18399 5.28187 5.30723 5.40222 5.42946 5.50356 5.56034 5.60271 5.63730 5.69430 5.73956 5.77235 5.79188 5.83863 5.92482 5.97151 6.07324 6.12799 6.16044 6.55841 6.71243 6.89460 7.54013 7.84833 8.33579 8.79276 9.26332 10.12485 10.27182 11.41854 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.003982 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.165968 B = 7029.423246 C = 7394.151802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.602 5.602 4 C 0.108 3.892 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.330 4.330 8 H 0.064 0.936 9 C -0.046 4.046 10 N -0.945 5.945 11 Si 1.084 2.916 12 H -0.295 1.295 13 H -0.287 1.287 14 H -0.295 1.295 15 C 0.552 3.448 16 O -0.532 6.532 17 C -0.173 4.173 18 C -0.128 4.128 19 C -0.132 4.132 20 H 0.118 0.882 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.085 4.085 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.367 0.633 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -12.200 -20.935 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.019 4.019 3 N -0.334 5.334 4 C -0.014 4.014 5 C 0.021 3.979 6 N -0.388 5.388 7 C -0.461 4.461 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.590 5.590 11 Si 0.915 3.085 12 H -0.223 1.223 13 H -0.213 1.213 14 H -0.222 1.222 15 C 0.339 3.661 16 O -0.408 6.408 17 C -0.176 4.176 18 C -0.165 4.165 19 C -0.150 4.150 20 H 0.136 0.864 21 C -0.132 4.132 22 C -0.162 4.162 23 C -0.122 4.122 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.117 -11.113 -19.521 23.038 hybrid contribution -0.798 -0.532 -1.239 1.567 sum -5.914 -11.645 -20.760 24.527 Atomic orbital electron populations 1.22308 0.95970 1.02160 1.02742 1.21584 0.94393 0.82593 1.03344 1.47819 1.61957 1.13917 1.09730 1.21668 0.99188 0.96398 0.84184 1.20828 0.94566 0.94639 0.87884 1.42230 1.19938 1.55409 1.21226 1.20052 0.96618 1.27039 1.02354 0.91783 1.25803 1.03689 0.96739 0.98073 1.70842 1.06519 1.42480 1.39204 0.83176 0.73807 0.76192 0.75306 1.22303 1.21317 1.22158 1.19417 0.77231 0.85987 0.83431 1.90729 1.45017 1.19589 1.85448 1.22290 0.93868 1.06232 0.95209 1.23137 0.96330 0.95497 1.01527 1.23363 1.00974 0.99735 0.90956 0.86389 1.21975 0.93618 1.01989 0.95632 1.22595 0.96609 1.01169 0.95785 1.21956 0.93630 1.00354 0.96255 0.92122 0.92078 0.91527 0.89740 0.90544 0.90639 0.90064 0.95882 0.96392 0.80044 0.93400 0.87908 0.88080 0.90948 0.91147 0.91223 0.91005 0.90830 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.79 37.16 0.36 -1.23 16 2 C 0.10 1.14 5.70 -4.04 -0.02 1.12 16 3 N -0.60 -9.02 2.51 -173.68 -0.44 -9.45 16 4 C 0.11 1.96 5.45 -4.04 -0.02 1.94 16 5 C 0.15 3.35 6.58 -4.04 -0.03 3.32 16 6 N -0.74 -20.06 5.60 -59.90 -0.34 -20.40 16 7 C -0.33 -9.86 9.99 -15.06 -0.15 -10.01 16 8 H 0.06 1.90 7.83 -52.49 -0.41 1.48 16 9 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 10 N -0.94 -30.19 13.70 55.49 0.76 -29.43 16 11 Si 1.08 26.89 29.92 -169.99 -5.09 21.81 16 12 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.55 8.89 7.16 -10.99 -0.08 8.81 16 16 O -0.53 -11.05 16.46 5.55 0.09 -10.96 16 17 C -0.17 -2.00 1.17 -154.54 -0.18 -2.18 16 18 C -0.13 -1.26 9.72 -26.73 -0.26 -1.52 16 19 C -0.13 -1.42 6.59 -89.51 -0.59 -2.01 16 20 H 0.12 1.47 8.14 -51.92 -0.42 1.05 16 21 C -0.09 -0.77 6.63 -25.07 -0.17 -0.93 16 22 C -0.12 -1.01 6.88 -25.04 -0.17 -1.18 16 23 C -0.08 -0.75 5.02 -25.37 -0.13 -0.87 16 24 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 25 H 0.06 0.56 5.68 -51.93 -0.29 0.26 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.78 5.86 -51.93 -0.30 0.48 16 28 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16 30 H 0.08 1.63 7.47 -51.92 -0.39 1.24 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.37 9.96 6.50 -40.82 -0.27 9.69 16 34 H 0.25 8.02 6.77 -40.82 -0.28 7.74 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.73 5.33 -51.93 -0.28 0.45 16 LS Contribution 334.01 15.07 5.03 5.03 Total: -1.00 -35.54 334.01 -8.37 -43.92 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.87 Total: 5.70 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.53 Total: -6.22 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.01 Total: -59.28 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.09 Total: 21.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.54 -8.37 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716230938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.064 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds