Wall clock time and date at job start Mon Mar 30 2020 00:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47507 * 2 1 4 4 C 1.46504 * 119.99878 * 75.60664 * 3 2 1 5 5 C 1.52997 * 109.47176 * 90.00241 * 4 3 2 6 6 N 1.46507 * 109.46773 * 179.97438 * 5 4 3 7 7 C 1.36937 * 119.99299 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00484 * 0.02562 * 7 6 5 9 9 C 1.38821 * 119.99278 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99559 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47103 * 269.99750 * 11 9 7 13 13 H 1.48499 * 109.47032 * 150.00128 * 11 9 7 14 14 H 1.48490 * 109.47263 * 29.99816 * 11 9 7 15 15 C 1.34772 * 120.00021 * 255.60735 * 3 2 1 16 16 O 1.21288 * 119.99930 * 183.55631 * 15 3 2 17 17 C 1.50697 * 120.00348 * 3.55394 * 15 3 2 18 18 C 1.52997 * 119.30135 * 266.63525 * 17 15 3 19 19 C 1.52997 * 60.37885 * 248.68665 * 18 17 15 20 20 H 1.09009 * 119.75428 * 111.11644 * 19 18 17 21 21 C 1.54261 * 118.20061 * 266.38238 * 19 18 17 22 22 C 1.54897 * 104.19742 * 87.78758 * 21 19 18 23 23 C 1.54274 * 117.41077 * 62.28444 * 17 15 3 24 24 H 1.08992 * 109.47258 * 292.09625 * 1 2 3 25 25 H 1.09003 * 109.46382 * 52.09324 * 1 2 3 26 26 H 1.09001 * 109.47125 * 172.08655 * 1 2 3 27 27 H 1.08998 * 109.47421 * 239.99228 * 2 1 3 28 28 H 1.09009 * 109.46864 * 119.99818 * 2 1 3 29 29 H 1.08997 * 109.47192 * 329.99774 * 4 3 2 30 30 H 1.09010 * 109.46633 * 210.00158 * 4 3 2 31 31 H 1.09004 * 109.47303 * 60.00030 * 5 4 3 32 32 H 1.08996 * 109.47035 * 299.99476 * 5 4 3 33 33 H 0.96996 * 119.99805 * 0.02562 * 6 5 4 34 34 H 0.97001 * 120.00222 * 0.02562 * 10 9 7 35 35 H 1.09000 * 117.46217 * 356.28500 * 18 17 15 36 36 H 1.09000 * 117.46552 * 141.09201 * 18 17 15 37 37 H 1.09001 * 110.48926 * 206.46364 * 21 19 18 38 38 H 1.09004 * 110.48973 * 328.97660 * 21 19 18 39 39 H 1.08991 * 110.75529 * 80.37229 * 22 21 19 40 40 H 1.08997 * 110.75246 * 203.56257 * 22 21 19 41 41 H 1.08998 * 110.48771 * 235.05264 * 23 17 15 42 42 H 1.09005 * 110.48362 * 357.69326 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.9653 2.1769 1.2290 5 6 3.2641 1.9881 2.0153 6 7 3.2111 2.7844 3.2440 7 6 4.2691 2.7729 4.1132 8 1 5.1427 2.1774 3.8929 9 6 4.2187 3.5270 5.2777 10 7 3.1543 4.2532 5.5459 11 14 5.6622 3.5121 6.4632 12 1 5.4766 2.4230 7.4556 13 1 5.7371 4.8168 7.1685 14 1 6.9205 3.2846 5.7082 15 6 2.5166 1.9197 -1.1305 16 8 2.9801 3.0404 -1.1153 17 6 2.4978 1.1295 -2.4136 18 6 3.7223 0.2966 -2.7980 19 6 3.3644 1.5379 -3.6177 20 1 4.0096 2.4158 -3.5798 21 6 2.4881 1.3543 -4.8739 22 6 1.0365 1.4459 -4.3411 23 6 1.1204 0.7256 -2.9788 24 1 -0.3633 0.3865 0.9521 25 1 -0.3632 0.6314 -0.8109 26 1 -0.3633 -1.0179 -0.1415 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.1216 1.8504 1.8370 30 1 1.8441 3.2300 0.9749 31 1 4.1077 2.3146 1.4072 32 1 3.3852 0.9351 2.2693 33 1 2.4263 3.3189 3.4419 34 1 2.4049 4.2613 4.9301 35 1 4.5957 0.3576 -2.1487 36 1 3.5448 -0.6764 -3.2559 37 1 2.6812 2.1499 -5.5935 38 1 2.6696 0.3795 -5.3266 39 1 0.7415 2.4857 -4.2008 40 1 0.3456 0.9372 -5.0134 41 1 1.0714 -0.3527 -3.1301 42 1 0.3231 1.0549 -2.3124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716230938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:20 Heat of formation + Delta-G solvation = -23.936670 kcal Electronic energy + Delta-G solvation = -20801.483365 eV Core-core repulsion = 17781.460375 eV Total energy + Delta-G solvation = -3020.022990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82813 -39.48951 -37.68173 -36.67747 -33.71456 -32.67647 -31.56182 -29.97231 -28.76421 -25.85271 -24.68369 -24.16099 -23.45762 -22.14882 -21.24074 -19.68095 -19.23138 -18.10606 -17.52557 -17.08640 -16.30214 -16.18119 -15.67635 -15.53833 -15.17700 -14.95312 -14.84862 -14.35912 -14.18338 -13.98931 -13.67018 -13.14380 -12.94121 -12.85789 -12.77499 -12.65253 -12.41698 -12.18139 -12.00388 -11.96706 -11.90905 -11.62995 -11.42812 -11.36968 -11.02947 -10.74942 -10.63552 -9.84594 -9.24538 -8.49553 -5.44721 1.44224 1.54529 1.66528 1.79719 1.82461 2.51763 2.66916 3.31169 3.36287 3.51206 3.59784 3.78652 3.82499 3.97106 4.03318 4.08655 4.22523 4.34844 4.37272 4.41140 4.46871 4.52530 4.63710 4.69707 4.76390 4.80723 4.85189 4.88330 4.95316 4.99740 5.03070 5.13420 5.17799 5.26564 5.41866 5.42806 5.46642 5.51354 6.33693 6.40250 6.97552 7.08071 7.87015 7.98297 9.02313 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.003982 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.165968 B = 7029.423246 C = 7394.151802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.123 3.877 5 C 0.157 3.843 6 N -0.754 5.754 7 C -0.344 4.344 8 H 0.063 0.937 9 C -0.099 4.099 10 N -0.969 5.969 11 Si 1.134 2.866 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.542 3.458 16 O -0.594 6.594 17 C -0.183 4.183 18 C -0.109 4.109 19 C -0.144 4.144 20 H 0.087 0.913 21 C -0.087 4.087 22 C -0.123 4.123 23 C -0.078 4.078 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.054 0.946 31 H -0.006 1.006 32 H 0.029 0.971 33 H 0.363 0.637 34 H 0.244 0.756 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -15.172 -22.301 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.329 5.329 4 C -0.001 4.001 5 C 0.029 3.971 6 N -0.400 5.400 7 C -0.475 4.475 8 H 0.081 0.919 9 C -0.291 4.291 10 N -0.617 5.617 11 Si 0.958 3.042 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.202 1.202 15 C 0.332 3.668 16 O -0.474 6.474 17 C -0.186 4.186 18 C -0.146 4.146 19 C -0.163 4.163 20 H 0.105 0.895 21 C -0.124 4.124 22 C -0.160 4.160 23 C -0.115 4.115 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.012 0.988 32 H 0.047 0.953 33 H 0.195 0.805 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.662 -14.152 -20.927 25.890 hybrid contribution -0.617 0.406 -0.853 1.128 sum -6.278 -13.746 -21.780 26.510 Atomic orbital electron populations 1.22271 0.94163 1.04048 1.02091 1.21921 0.95854 0.80006 1.04553 1.47950 1.61499 1.15267 1.08206 1.21277 0.97457 0.95855 0.85469 1.20843 0.95826 0.94074 0.86324 1.42412 1.19298 1.55988 1.22275 1.20394 0.97266 1.26856 1.03002 0.91903 1.27392 1.05479 0.96086 1.00094 1.70957 1.07192 1.44041 1.39480 0.82561 0.71371 0.76530 0.73763 1.20277 1.21519 1.20193 1.20374 0.75760 0.85655 0.85045 1.90693 1.47698 1.22505 1.86547 1.22337 0.96386 1.06907 0.92946 1.23245 0.94443 0.96678 1.00211 1.23482 1.01018 0.99465 0.92341 0.89504 1.21994 0.92728 1.03509 0.94158 1.22615 0.97123 1.00281 0.96031 1.22021 0.91127 1.02343 0.96038 0.93498 0.91914 0.88442 0.87177 0.90658 0.88707 0.92706 0.98776 0.95335 0.80513 0.94530 0.89627 0.84181 0.90897 0.88468 0.93367 0.88166 0.87503 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.79 71.98 0.70 -1.92 16 2 C 0.10 1.94 5.70 86.38 0.49 2.43 16 3 N -0.60 -17.98 2.51 -821.81 -2.06 -20.04 16 4 C 0.12 4.63 5.45 86.38 0.47 5.10 16 5 C 0.16 7.27 6.58 86.38 0.57 7.84 16 6 N -0.75 -42.05 5.60 -343.43 -1.92 -43.97 16 7 C -0.34 -20.91 9.99 84.04 0.84 -20.07 16 8 H 0.06 3.76 7.83 -2.91 -0.02 3.73 16 9 C -0.10 -6.04 5.50 84.87 0.47 -5.57 16 10 N -0.97 -62.92 13.70 21.65 0.30 -62.63 16 11 Si 1.13 53.94 29.92 68.60 2.05 55.99 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.54 17.92 7.16 87.66 0.63 18.55 16 16 O -0.59 -26.44 16.46 -3.05 -0.05 -26.49 16 17 C -0.18 -4.00 1.17 -52.20 -0.06 -4.06 16 18 C -0.11 -1.90 9.72 30.59 0.30 -1.60 16 19 C -0.14 -3.00 6.59 -10.07 -0.07 -3.07 16 20 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 21 C -0.09 -1.18 6.63 31.67 0.21 -0.97 16 22 C -0.12 -1.65 6.88 31.69 0.22 -1.43 16 23 C -0.08 -1.13 5.02 31.48 0.16 -0.97 16 24 H 0.05 0.87 7.67 -2.39 -0.02 0.85 16 25 H 0.06 0.99 5.68 -2.39 -0.01 0.97 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 1.64 5.86 -2.39 -0.01 1.63 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 3.17 7.51 -2.39 -0.02 3.16 16 30 H 0.05 2.35 7.47 -2.38 -0.02 2.33 16 31 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.36 20.49 6.50 -92.71 -0.60 19.89 16 34 H 0.24 15.84 6.77 -92.71 -0.63 15.21 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.15 5.33 -2.38 -0.01 1.14 16 Total: -1.00 -80.76 334.01 3.78 -76.98 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.54 Total: 25.91 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.93 Total: -5.75 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -3.69 Total: -126.64 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 2.05 Total: 55.99 kcal Total: -80.76 3.78 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716230938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.039 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds