Wall clock time and date at job start Mon Mar 30 2020 01:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47709 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00587 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47391 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47014 * 120.00270 * 11 9 7 14 14 H 1.48499 * 109.47361 * 240.00179 * 11 9 7 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 H 1.08998 * 115.55538 * 34.41104 * 17 15 2 19 19 C 1.53002 * 117.49862 * 248.74042 * 17 15 2 20 20 C 1.52998 * 117.49735 * 180.08369 * 17 15 2 21 21 H 1.09004 * 117.50272 * 359.97438 * 20 17 15 22 22 C 1.53004 * 117.50173 * 214.97612 * 20 17 15 23 23 C 1.53008 * 117.49724 * 128.61815 * 22 20 17 24 24 C 1.53001 * 117.49324 * 59.99988 * 22 20 17 25 25 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 26 26 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 27 27 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 28 28 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 29 29 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 30 30 H 1.09007 * 109.46869 * 300.00135 * 4 3 2 31 31 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 32 32 H 1.09000 * 109.47178 * 300.00127 * 5 4 3 33 33 H 1.09003 * 109.47406 * 59.99794 * 5 4 3 34 34 H 0.97003 * 119.99010 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99845 * 179.97438 * 10 9 7 36 36 H 1.09000 * 117.49762 * 0.02562 * 19 17 15 37 37 H 1.09003 * 117.50172 * 145.02094 * 19 17 15 38 38 H 1.08995 * 115.55454 * 274.33246 * 22 20 17 39 39 H 1.08995 * 117.49991 * 0.02562 * 23 22 20 40 40 H 1.09001 * 117.49287 * 145.02920 * 23 22 20 41 41 H 1.09002 * 117.49910 * 214.97695 * 24 22 20 42 42 H 1.09001 * 117.50156 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 6 3.2170 3.0357 1.4426 6 7 3.4606 3.4590 2.8238 7 6 4.1337 4.6249 3.0740 8 1 4.4846 5.2327 2.2532 9 6 4.3640 5.0262 4.3827 10 7 3.9359 4.2858 5.3832 11 14 5.2828 6.6164 4.7241 12 1 5.6551 7.2589 3.4380 13 1 4.4119 7.5342 5.5015 14 1 6.5113 6.3206 5.5041 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 1 0.4479 -2.4739 -0.5556 19 6 1.4578 -3.3298 1.2655 20 6 2.2075 -3.7626 0.0031 21 1 3.2934 -3.6677 0.0044 22 6 1.6505 -4.9568 -0.7746 23 6 2.5811 -5.6436 -1.7763 24 6 1.4236 -4.7774 -2.2770 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5139 28 1 3.1499 1.1384 -0.5137 29 1 1.6085 2.0284 -0.5138 30 1 1.5000 1.8408 1.9563 31 1 3.0416 0.9508 1.9565 32 1 4.1694 2.9058 0.9287 33 1 2.6276 3.7952 0.9288 34 1 3.1457 2.9129 3.5610 35 1 4.0972 4.5660 6.2977 36 1 2.0502 -2.9499 2.0979 37 1 0.5681 -3.8959 1.5415 38 1 0.9449 -5.5845 -0.2305 39 1 3.5902 -5.2450 -1.8809 40 1 2.4878 -6.7235 -1.8911 41 1 0.5689 -5.2875 -2.7214 42 1 1.6706 -3.8086 -2.7113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716573020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:10 Heat of formation + Delta-G solvation = 21.543269 kcal Electronic energy + Delta-G solvation = -19714.593149 eV Core-core repulsion = 16696.542317 eV Total energy + Delta-G solvation = -3018.050831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29162 -38.24858 -36.18082 -35.07456 -34.76226 -32.19691 -29.85463 -26.90812 -26.20252 -24.30113 -23.48805 -22.70415 -22.25386 -20.91025 -20.22391 -18.89579 -17.41795 -17.01207 -16.29402 -15.81431 -15.38620 -14.92022 -14.59778 -14.36853 -14.03654 -13.47604 -13.18379 -13.06404 -13.00387 -12.66575 -12.33556 -11.92971 -11.90900 -11.80962 -11.65039 -11.19002 -11.11753 -10.89544 -10.83399 -10.69421 -10.36089 -10.28845 -10.01946 -9.94996 -9.72710 -9.63331 -8.83280 -8.63180 -6.87263 -5.72083 -3.00620 2.46975 2.90147 3.39723 3.46442 3.51627 3.54287 3.74245 4.22502 4.44890 4.51032 4.63751 4.67159 4.77827 4.82756 4.99299 5.06456 5.17667 5.24578 5.28327 5.35432 5.46816 5.49543 5.58453 5.59852 5.61126 5.72967 5.74568 5.84246 5.87610 5.95979 6.06043 6.13302 6.34474 6.43331 6.58059 6.90754 6.93362 7.37331 7.74490 8.20391 8.46945 9.57733 10.16634 10.51346 11.51187 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.002943 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.794036 B = 9512.737752 C = 9692.864635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.119 3.881 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.540 3.460 16 O -0.536 6.536 17 C -0.185 4.185 18 H 0.124 0.876 19 C -0.142 4.142 20 C -0.093 4.093 21 H 0.119 0.881 22 C -0.127 4.127 23 C -0.174 4.174 24 C -0.178 4.178 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 -18.846 -14.783 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C -0.004 4.004 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.328 3.672 16 O -0.412 6.412 17 C -0.206 4.206 18 H 0.142 0.858 19 C -0.180 4.180 20 C -0.111 4.111 21 H 0.137 0.863 22 C -0.145 4.145 23 C -0.211 4.211 24 C -0.215 4.215 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.142 -18.661 -14.830 25.905 hybrid contribution 0.175 0.821 0.565 1.012 sum -9.967 -17.840 -14.265 24.922 Atomic orbital electron populations 1.21830 0.79574 1.02846 1.02193 1.47808 1.07033 1.06189 1.73424 1.21519 0.97480 0.83361 0.98016 1.22049 1.01045 0.98904 0.95716 1.20542 0.96033 0.91909 0.88692 1.42366 1.68343 1.25941 1.01126 1.19299 1.27626 0.98067 0.91830 0.91093 1.24760 1.01815 0.99113 0.95566 1.69679 1.51681 1.38889 0.98114 0.86095 0.79175 0.83067 0.77748 1.20539 1.21889 1.21854 1.19667 0.87360 0.84365 0.75847 1.90714 1.13814 1.87167 1.49543 1.22341 1.02323 0.90409 1.05510 0.85832 1.23060 1.02811 1.00902 0.91184 1.21838 0.98923 0.91339 0.99016 0.86274 1.21774 1.02932 0.98640 0.91111 1.22993 0.96000 0.98700 1.03447 1.22976 1.00450 1.01942 0.96112 0.92332 0.91156 0.90943 0.89847 0.90507 0.91998 0.91667 0.96229 0.96405 0.78336 0.93600 0.87934 0.87754 0.87407 0.88506 0.88745 0.88831 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.31 59.85 0.62 1.30 16 2 N -0.61 -7.75 2.87 -181.57 -0.52 -8.27 16 3 C 0.12 1.71 5.45 -4.04 -0.02 1.68 16 4 C -0.14 -2.45 5.65 -26.73 -0.15 -2.60 16 5 C 0.16 3.35 6.26 -4.05 -0.03 3.32 16 6 N -0.73 -19.79 5.60 -59.91 -0.34 -20.13 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 10 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 11 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.54 7.58 7.46 -10.98 -0.08 7.50 16 16 O -0.54 -9.77 15.84 5.56 0.09 -9.68 16 17 C -0.18 -1.87 4.93 -91.77 -0.45 -2.33 16 18 H 0.12 0.97 6.44 -51.93 -0.33 0.64 16 19 C -0.14 -1.32 9.96 -26.69 -0.27 -1.59 16 20 C -0.09 -0.92 5.38 -90.58 -0.49 -1.40 16 21 H 0.12 1.44 7.67 -51.93 -0.40 1.04 16 22 C -0.13 -0.98 5.87 -90.61 -0.53 -1.52 16 23 C -0.17 -1.30 10.25 -26.73 -0.27 -1.57 16 24 C -0.18 -1.29 10.18 -26.73 -0.27 -1.57 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.45 6.00 -51.93 -0.31 0.14 16 27 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 28 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 29 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 10.85 7.67 -40.82 -0.31 10.53 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -34.43 350.26 -9.16 -43.59 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.18 Total: 6.20 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.19 Total: -6.47 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.13 Total: -56.96 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.43 -9.16 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716573020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.135 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds