Wall clock time and date at job start Mon Mar 30 2020 01:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 C 1.52996 * 109.47245 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47709 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00587 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00008 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00277 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47391 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47014 * 120.00270 * 11 9 7 14 14 H 1.48499 * 109.47361 * 240.00179 * 11 9 7 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 H 1.08998 * 115.55538 * 34.41104 * 17 15 2 19 19 C 1.53002 * 117.49862 * 248.74042 * 17 15 2 20 20 C 1.52998 * 117.49735 * 180.08369 * 17 15 2 21 21 H 1.09004 * 117.50272 * 359.97438 * 20 17 15 22 22 C 1.53004 * 117.50173 * 214.97612 * 20 17 15 23 23 C 1.53008 * 117.49724 * 128.61815 * 22 20 17 24 24 C 1.53001 * 117.49324 * 59.99988 * 22 20 17 25 25 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 26 26 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 27 27 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 28 28 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 29 29 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 30 30 H 1.09007 * 109.46869 * 300.00135 * 4 3 2 31 31 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 32 32 H 1.09000 * 109.47178 * 300.00127 * 5 4 3 33 33 H 1.09003 * 109.47406 * 59.99794 * 5 4 3 34 34 H 0.97003 * 119.99010 * 0.02562 * 6 5 4 35 35 H 0.96999 * 119.99845 * 179.97438 * 10 9 7 36 36 H 1.09000 * 117.49762 * 0.02562 * 19 17 15 37 37 H 1.09003 * 117.50172 * 145.02094 * 19 17 15 38 38 H 1.08995 * 115.55454 * 274.33246 * 22 20 17 39 39 H 1.08995 * 117.49991 * 0.02562 * 23 22 20 40 40 H 1.09001 * 117.49287 * 145.02920 * 23 22 20 41 41 H 1.09002 * 117.49910 * 214.97695 * 24 22 20 42 42 H 1.09001 * 117.50156 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 6 3.2170 3.0357 1.4426 6 7 3.4606 3.4590 2.8238 7 6 4.1337 4.6249 3.0740 8 1 4.4846 5.2327 2.2532 9 6 4.3640 5.0262 4.3827 10 7 3.9359 4.2858 5.3832 11 14 5.2828 6.6164 4.7241 12 1 5.6551 7.2589 3.4380 13 1 4.4119 7.5342 5.5015 14 1 6.5113 6.3206 5.5041 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 1 0.4479 -2.4739 -0.5556 19 6 1.4578 -3.3298 1.2655 20 6 2.2075 -3.7626 0.0031 21 1 3.2934 -3.6677 0.0044 22 6 1.6505 -4.9568 -0.7746 23 6 2.5811 -5.6436 -1.7763 24 6 1.4236 -4.7774 -2.2770 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5139 28 1 3.1499 1.1384 -0.5137 29 1 1.6085 2.0284 -0.5138 30 1 1.5000 1.8408 1.9563 31 1 3.0416 0.9508 1.9565 32 1 4.1694 2.9058 0.9287 33 1 2.6276 3.7952 0.9288 34 1 3.1457 2.9129 3.5610 35 1 4.0972 4.5660 6.2977 36 1 2.0502 -2.9499 2.0979 37 1 0.5681 -3.8959 1.5415 38 1 0.9449 -5.5845 -0.2305 39 1 3.5902 -5.2450 -1.8809 40 1 2.4878 -6.7235 -1.8911 41 1 0.5689 -5.2875 -2.7214 42 1 1.6706 -3.8086 -2.7113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716573020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:09 Heat of formation + Delta-G solvation = 0.236562 kcal Electronic energy + Delta-G solvation = -19715.517077 eV Core-core repulsion = 16696.542317 eV Total energy + Delta-G solvation = -3018.974759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29879 -39.03602 -37.53637 -36.42255 -35.85776 -34.05376 -31.66365 -28.00498 -27.43497 -25.69914 -24.53703 -23.72185 -23.18535 -22.49511 -20.96052 -19.87858 -19.18551 -18.37209 -17.35423 -16.67869 -16.51596 -16.36061 -16.02401 -15.50244 -15.41208 -15.16858 -14.71344 -14.17687 -13.97469 -13.56894 -13.41022 -13.35005 -13.06014 -12.81549 -12.74831 -12.52014 -12.42815 -12.28916 -12.06235 -11.92199 -11.82613 -11.81869 -11.77831 -10.99387 -10.99008 -10.83838 -10.55099 -9.71286 -9.06420 -7.99176 -5.29665 1.43339 1.45132 1.47063 1.57345 1.93938 2.53581 2.67731 3.04541 3.34279 3.46217 3.67102 3.78472 3.84564 3.95191 4.05900 4.12741 4.18055 4.22997 4.33770 4.40517 4.51284 4.53525 4.56495 4.67717 4.72093 4.79938 4.81981 4.83770 4.92751 5.03270 5.05016 5.20171 5.24872 5.26316 5.29267 5.35811 5.45094 5.53023 6.22958 6.37175 7.14123 7.28241 8.02657 8.26676 9.25044 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.002943 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.794036 B = 9512.737752 C = 9692.864635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.125 3.875 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.264 1.264 13 H -0.289 1.289 14 H -0.293 1.293 15 C 0.528 3.472 16 O -0.591 6.591 17 C -0.180 4.180 18 H 0.157 0.843 19 C -0.133 4.133 20 C -0.099 4.099 21 H 0.086 0.914 22 C -0.124 4.124 23 C -0.183 4.183 24 C -0.171 4.171 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.013 0.987 33 H 0.036 0.964 34 H 0.372 0.628 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 -19.119 -16.072 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C 0.002 3.998 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.381 4.381 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.189 1.189 13 H -0.215 1.215 14 H -0.220 1.220 15 C 0.318 3.682 16 O -0.472 6.472 17 C -0.201 4.201 18 H 0.174 0.826 19 C -0.170 4.170 20 C -0.117 4.117 21 H 0.104 0.896 22 C -0.142 4.142 23 C -0.220 4.220 24 C -0.208 4.208 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.332 -18.931 -16.168 27.782 hybrid contribution 0.857 0.889 0.932 1.547 sum -11.474 -18.043 -15.236 26.255 Atomic orbital electron populations 1.22147 0.76601 1.05207 1.03105 1.47930 1.08829 1.05075 1.72323 1.21348 0.97833 0.85176 0.95438 1.21848 1.00031 0.96058 0.97978 1.20701 0.96397 0.94039 0.86046 1.42622 1.68266 1.25429 1.02926 1.19721 1.27334 0.98750 0.92252 0.90427 1.25683 1.03217 1.02831 0.95401 1.69842 1.53253 1.40854 0.98337 0.84982 0.77449 0.78806 0.77956 1.18862 1.21538 1.21999 1.20453 0.87037 0.85995 0.74754 1.90686 1.16385 1.88051 1.52092 1.22369 1.02901 0.88193 1.06617 0.82591 1.23133 1.03467 1.00367 0.90053 1.21775 0.97396 0.92410 1.00160 0.89605 1.21784 1.03276 0.97859 0.91272 1.23060 0.95464 0.99718 1.03775 1.23021 1.00788 1.01469 0.95552 0.92074 0.88391 0.89132 0.91775 0.87285 0.91370 0.94765 0.96942 0.94646 0.79676 0.93872 0.90228 0.84388 0.85315 0.90099 0.87090 0.86766 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.31 127.77 1.32 2.32 16 2 N -0.61 -14.77 2.87 -846.75 -2.43 -17.20 16 3 C 0.13 3.52 5.45 86.38 0.47 3.99 16 4 C -0.12 -4.30 5.65 30.59 0.17 -4.12 16 5 C 0.16 6.67 6.26 86.38 0.54 7.21 16 6 N -0.75 -41.10 5.60 -343.47 -1.92 -43.02 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 10 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 11 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 15 C 0.53 14.90 7.46 87.66 0.65 15.56 16 16 O -0.59 -22.84 15.84 -3.02 -0.05 -22.88 16 17 C -0.18 -3.40 4.93 -11.54 -0.06 -3.46 16 18 H 0.16 1.89 6.44 -2.39 -0.02 1.87 16 19 C -0.13 -2.31 9.96 30.62 0.30 -2.00 16 20 C -0.10 -1.92 5.38 -10.77 -0.06 -1.98 16 21 H 0.09 2.25 7.67 -2.38 -0.02 2.24 16 22 C -0.12 -1.69 5.87 -10.79 -0.06 -1.75 16 23 C -0.18 -2.54 10.25 30.60 0.31 -2.23 16 24 C -0.17 -2.13 10.18 30.60 0.31 -1.82 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.85 6.00 -2.39 -0.01 0.84 16 27 H 0.09 0.99 7.89 -2.38 -0.02 0.97 16 28 H 0.06 2.07 7.42 -2.39 -0.02 2.05 16 29 H 0.11 2.37 7.89 -2.39 -0.02 2.35 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.37 21.67 7.67 -92.71 -0.71 20.96 16 35 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -76.92 350.26 3.40 -73.52 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.28 Total: 27.99 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.21 Total: -6.40 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -4.07 Total: -121.80 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -76.92 3.40 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716573020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.759 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds