Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21275 * 119.99486 * 359.72528 * 15 14 13 17 17 C 1.50697 * 120.00051 * 179.72297 * 15 14 13 18 18 C 1.53009 * 110.34290 * 57.71400 * 17 15 14 19 19 C 1.51107 * 110.39059 * 295.30739 * 17 15 14 20 20 C 1.30529 * 111.09939 * 257.62589 * 19 17 15 21 21 C 1.51100 * 111.10551 * 359.97438 * 20 19 17 22 22 C 1.54629 * 110.38522 * 179.97438 * 17 15 14 23 23 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 25 25 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 26 26 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 27 27 H 1.09007 * 109.46986 * 119.99803 * 2 1 3 28 28 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 30 30 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 31 31 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 32 32 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 33 33 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 34 34 H 1.09003 * 109.46790 * 60.70134 * 18 17 15 35 35 H 1.09000 * 109.46571 * 180.69947 * 18 17 15 36 36 H 1.09000 * 109.46841 * 300.69710 * 18 17 15 37 37 H 1.08001 * 124.44762 * 77.60086 * 19 17 15 38 38 H 1.07998 * 124.44377 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.38438 * 224.75136 * 21 20 19 40 40 H 1.08999 * 110.48349 * 102.42846 * 21 20 19 41 41 H 1.09001 * 111.03556 * 212.20798 * 22 17 15 42 42 H 1.08994 * 111.03836 * 336.11010 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5692 4.1515 3.3657 17 6 0.9274 4.7383 5.0935 18 6 2.0711 5.7324 4.8817 19 6 1.3112 3.7026 6.1247 20 6 0.3391 3.5004 6.9720 21 6 -0.8548 4.3679 6.6475 22 6 -0.3041 5.4547 5.6946 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.0492 3.4026 -0.7834 29 1 3.1617 2.7640 1.0859 30 1 2.7255 1.2833 1.9722 31 1 0.3541 2.0069 2.0138 32 1 0.7903 3.4876 1.1276 33 1 2.4038 3.3277 3.4396 34 1 1.7574 6.5021 4.1765 35 1 2.3306 6.1957 5.8336 36 1 2.9397 5.2075 4.4843 37 1 2.2645 3.1960 6.1563 38 1 0.3825 2.8044 7.7967 39 1 -1.2510 4.8233 7.5551 40 1 -1.6273 3.7825 6.1489 41 1 -0.0070 6.3457 6.2478 42 1 -1.0298 5.7017 4.9199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731809427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = -10.443498 kcal Electronic energy + Delta-G solvation = -20876.255244 eV Core-core repulsion = 17856.817363 eV Total energy + Delta-G solvation = -3019.437882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35275 -37.51803 -36.20333 -34.08292 -31.88947 -31.61157 -29.58050 -28.91511 -27.42196 -25.04849 -24.23567 -22.49969 -21.17548 -20.33920 -19.75930 -18.67333 -17.03512 -16.50285 -15.77034 -15.19886 -15.00642 -14.55700 -14.34857 -13.84746 -13.68788 -13.22783 -13.13017 -12.61756 -12.38375 -12.27381 -12.06584 -11.93626 -11.85560 -11.53058 -11.19028 -11.14041 -11.08812 -10.80635 -10.75118 -10.60552 -10.52648 -10.07975 -9.87648 -9.86566 -9.66682 -8.82412 -8.54930 -8.40287 -6.62251 -5.83716 -3.42361 2.09903 3.05383 3.35731 3.41238 3.45546 3.67326 4.44634 4.46617 4.58554 4.91020 5.02459 5.22767 5.28431 5.35202 5.45786 5.54988 5.64365 5.66462 5.79290 5.88562 6.00156 6.02188 6.11824 6.14080 6.18515 6.28482 6.36381 6.39040 6.44344 6.52370 6.69618 6.77037 6.91364 6.94363 7.04997 7.17113 7.54974 7.79911 7.99849 8.48014 8.65580 9.14700 9.76621 10.34809 11.16452 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.005165 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.476745 B = 5419.357872 C = 6065.734497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.716 5.716 15 C 0.524 3.476 16 O -0.547 6.547 17 C -0.061 4.061 18 C -0.136 4.136 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.102 4.102 22 C -0.107 4.107 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.255 0.745 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 2.527 14.495 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.011 3.989 13 C -0.028 4.028 14 N -0.366 5.366 15 C 0.308 3.692 16 O -0.425 6.425 17 C -0.065 4.065 18 C -0.193 4.193 19 C -0.175 4.175 20 C -0.172 4.172 21 C -0.139 4.139 22 C -0.145 4.145 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.439 2.633 14.110 15.024 hybrid contribution 0.437 0.614 -0.474 0.890 sum -4.002 3.247 13.636 14.578 Atomic orbital electron populations 1.22391 0.99937 0.99056 1.01393 1.20875 0.91755 0.87001 0.98855 1.43604 1.76067 1.08281 1.02096 1.18982 1.04761 1.21353 0.93992 0.92149 1.25170 0.94129 1.01180 0.98122 1.69980 1.03140 1.37362 1.42538 0.86471 0.76964 0.82342 0.81652 1.20793 1.21568 1.20593 1.21051 0.94604 0.96905 0.86378 1.22439 1.00973 0.96490 0.82880 1.46098 1.12999 1.53196 1.24304 1.20230 0.85261 0.78657 0.85005 1.90642 1.20678 1.61216 1.69953 1.20670 0.97562 0.95241 0.92977 1.21795 0.96755 0.98457 1.02321 1.23081 0.99614 0.99067 0.95785 1.23355 0.95286 0.99514 0.99076 1.21390 0.97137 0.96312 0.99045 1.22465 0.96116 0.97105 0.98806 0.94467 0.93694 0.93112 0.93586 0.94773 0.93472 0.88423 0.95406 0.93147 0.91867 0.77048 0.91897 0.91566 0.91800 0.85283 0.85620 0.91198 0.90301 0.90732 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.21 2.43 -173.23 -0.42 -14.64 16 4 C -0.26 -7.06 9.45 -15.06 -0.14 -7.20 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.77 11.47 55.49 0.64 -24.13 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.14 3.10 5.45 -4.04 -0.02 3.08 16 13 C 0.10 2.03 6.00 -4.04 -0.02 2.00 16 14 N -0.72 -12.37 5.42 -60.30 -0.33 -12.69 16 15 C 0.52 9.04 6.54 -10.98 -0.07 8.97 16 16 O -0.55 -11.48 15.46 5.56 0.09 -11.40 16 17 C -0.06 -0.79 0.74 -155.75 -0.12 -0.91 16 18 C -0.14 -1.52 8.39 37.16 0.31 -1.21 16 19 C -0.16 -1.79 9.37 -35.70 -0.33 -2.12 16 20 C -0.15 -1.65 10.78 -35.70 -0.38 -2.04 16 21 C -0.10 -1.14 6.81 -26.80 -0.18 -1.32 16 22 C -0.11 -1.30 6.03 -24.99 -0.15 -1.45 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 25 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 26 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.03 0.67 7.83 -51.92 -0.41 0.27 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.10 2.45 5.52 -51.93 -0.29 2.16 16 30 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 31 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.40 5.88 7.80 -40.82 -0.32 5.57 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 42 H 0.09 1.27 6.95 -51.93 -0.36 0.91 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -30.41 338.93 -7.85 -38.26 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.05 Total: 4.80 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.85 Total: -1.72 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.46 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.41 -7.85 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.812 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds