Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21275 * 119.99486 * 359.72528 * 15 14 13 17 17 C 1.50697 * 120.00051 * 179.72297 * 15 14 13 18 18 C 1.53009 * 110.34290 * 57.71400 * 17 15 14 19 19 C 1.51107 * 110.39059 * 295.30739 * 17 15 14 20 20 C 1.30529 * 111.09939 * 257.62589 * 19 17 15 21 21 C 1.51100 * 111.10551 * 359.97438 * 20 19 17 22 22 C 1.54629 * 110.38522 * 179.97438 * 17 15 14 23 23 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 25 25 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 26 26 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 27 27 H 1.09007 * 109.46986 * 119.99803 * 2 1 3 28 28 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 30 30 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 31 31 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 32 32 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 33 33 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 34 34 H 1.09003 * 109.46790 * 60.70134 * 18 17 15 35 35 H 1.09000 * 109.46571 * 180.69947 * 18 17 15 36 36 H 1.09000 * 109.46841 * 300.69710 * 18 17 15 37 37 H 1.08001 * 124.44762 * 77.60086 * 19 17 15 38 38 H 1.07998 * 124.44377 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.38438 * 224.75136 * 21 20 19 40 40 H 1.08999 * 110.48349 * 102.42846 * 21 20 19 41 41 H 1.09001 * 111.03556 * 212.20798 * 22 17 15 42 42 H 1.08994 * 111.03836 * 336.11010 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5692 4.1515 3.3657 17 6 0.9274 4.7383 5.0935 18 6 2.0711 5.7324 4.8817 19 6 1.3112 3.7026 6.1247 20 6 0.3391 3.5004 6.9720 21 6 -0.8548 4.3679 6.6475 22 6 -0.3041 5.4547 5.6946 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.0492 3.4026 -0.7834 29 1 3.1617 2.7640 1.0859 30 1 2.7255 1.2833 1.9722 31 1 0.3541 2.0069 2.0138 32 1 0.7903 3.4876 1.1276 33 1 2.4038 3.3277 3.4396 34 1 1.7574 6.5021 4.1765 35 1 2.3306 6.1957 5.8336 36 1 2.9397 5.2075 4.4843 37 1 2.2645 3.1960 6.1563 38 1 0.3825 2.8044 7.7967 39 1 -1.2510 4.8233 7.5551 40 1 -1.6273 3.7825 6.1489 41 1 -0.0070 6.3457 6.2478 42 1 -1.0298 5.7017 4.9199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731809427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = -28.396691 kcal Electronic energy + Delta-G solvation = -20877.033753 eV Core-core repulsion = 17856.817363 eV Total energy + Delta-G solvation = -3020.216391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56308 -38.79893 -37.94344 -35.67624 -33.85053 -32.65590 -31.17748 -29.91263 -29.13883 -26.35363 -25.79843 -23.95248 -22.63772 -22.14326 -20.84318 -19.85634 -18.57438 -17.97651 -17.07182 -17.04230 -16.36021 -16.11183 -15.59987 -15.54574 -15.42220 -14.50896 -14.30063 -14.13125 -13.99908 -13.75639 -13.26773 -13.25223 -13.01946 -12.85984 -12.73906 -12.63448 -12.42725 -12.32617 -12.16895 -12.09526 -12.00844 -11.70205 -11.69605 -11.51902 -11.00334 -10.55451 -10.03547 -9.82600 -8.61023 -7.87310 -5.50108 1.20720 1.43423 1.46788 1.52962 1.70779 2.26809 2.50479 3.20714 3.50916 3.63984 3.72329 3.89017 4.08726 4.28859 4.30135 4.42068 4.44826 4.48655 4.57054 4.71417 4.78790 4.80406 4.81931 4.82480 4.92970 5.00694 5.06094 5.12046 5.19594 5.21940 5.26515 5.34852 5.44646 5.52658 5.54188 5.64853 5.73026 5.94942 6.43658 6.61484 7.13304 7.27652 7.81261 8.33725 9.08831 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.005165 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.476745 B = 5419.357872 C = 6065.734497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.274 4.274 5 H 0.051 0.949 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.287 1.287 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.146 3.854 13 C 0.120 3.880 14 N -0.710 5.710 15 C 0.518 3.482 16 O -0.590 6.590 17 C -0.057 4.057 18 C -0.134 4.134 19 C -0.169 4.169 20 C -0.146 4.146 21 C -0.105 4.105 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.410 0.590 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 2.418 16.357 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.404 4.404 5 H 0.069 0.931 6 C -0.224 4.224 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.214 1.214 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.019 3.981 13 C -0.006 4.006 14 N -0.360 5.360 15 C 0.306 3.694 16 O -0.471 6.471 17 C -0.061 4.061 18 C -0.191 4.191 19 C -0.187 4.187 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.148 4.148 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.246 0.754 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.074 2.512 15.991 16.692 hybrid contribution 0.268 0.611 -1.027 1.225 sum -3.807 3.123 14.964 15.753 Atomic orbital electron populations 1.22220 0.98089 1.00857 1.00264 1.21011 0.93098 0.85457 0.99303 1.43848 1.76409 1.09644 1.01999 1.19129 1.04467 1.22024 0.94770 0.93135 1.25740 0.93945 1.02725 1.00014 1.70066 1.03491 1.37952 1.43796 0.85622 0.76580 0.79970 0.79975 1.21403 1.21198 1.19940 1.20915 0.94298 0.96713 0.86160 1.21900 0.99884 0.95186 0.83650 1.45962 1.13939 1.53019 1.23116 1.21135 0.84387 0.77795 0.86130 1.90621 1.22536 1.62603 1.71324 1.20708 0.98623 0.95968 0.90752 1.21824 0.95981 0.97787 1.03539 1.23185 1.00899 0.99253 0.95388 1.23620 0.94308 0.99049 0.99379 1.21428 0.97070 0.96073 0.99615 1.22509 0.95264 0.98468 0.98565 0.91146 0.94277 0.94710 0.94366 0.93006 0.93600 0.90778 0.93738 0.93729 0.95569 0.75420 0.93060 0.88864 0.91478 0.83467 0.83084 0.88678 0.92288 0.88180 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 10.21 71.98 0.73 -4.97 16 2 C 0.14 5.69 6.44 86.38 0.56 6.25 16 3 N -0.60 -29.48 2.43 -701.99 -1.71 -31.19 16 4 C -0.27 -14.99 9.45 84.03 0.79 -14.20 16 5 H 0.05 2.81 7.92 -2.91 -0.02 2.79 16 6 C -0.03 -1.42 4.95 84.86 0.42 -1.00 16 7 N -0.91 -51.08 11.47 21.65 0.25 -50.83 16 8 Si 0.95 44.52 29.60 68.60 2.03 46.56 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.60 5.45 86.38 0.47 7.07 16 13 C 0.12 5.09 6.00 86.38 0.52 5.61 16 14 N -0.71 -24.46 5.42 -463.07 -2.51 -26.97 16 15 C 0.52 17.93 6.54 87.66 0.57 18.51 16 16 O -0.59 -25.51 15.46 -3.02 -0.05 -25.56 16 17 C -0.06 -1.41 0.74 -52.99 -0.04 -1.45 16 18 C -0.13 -2.74 8.39 71.99 0.60 -2.14 16 19 C -0.17 -3.39 9.37 26.26 0.25 -3.14 16 20 C -0.15 -2.69 10.78 26.26 0.28 -2.40 16 21 C -0.10 -2.14 6.81 30.55 0.21 -1.94 16 22 C -0.11 -2.55 6.03 31.72 0.19 -2.36 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.47 6.64 -2.39 -0.02 1.45 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 27 H 0.05 1.96 7.83 -2.38 -0.02 1.94 16 28 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.07 3.76 5.52 -2.39 -0.01 3.75 16 30 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 31 H 0.04 1.93 6.64 -2.39 -0.02 1.92 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 11.82 7.80 -92.70 -0.72 11.10 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.32 7.49 -2.39 -0.02 1.30 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.77 7.91 -2.39 -0.02 1.76 16 42 H 0.06 1.81 6.95 -2.39 -0.02 1.79 16 Total: -1.00 -66.40 338.93 3.84 -62.56 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.27 Total: 21.58 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.56 Total: 3.85 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.97 Total: -108.98 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.40 3.84 -62.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.163 kcal (2) G-P(sol) polarization free energy of solvation -66.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds