Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47574 * 2 1 4 4 C 1.36940 * 119.99633 * 94.04490 * 3 2 1 5 5 H 1.08004 * 120.00023 * 213.75687 * 4 3 2 6 6 C 1.38812 * 120.00176 * 33.76110 * 4 3 2 7 7 N 1.31618 * 119.99823 * 22.38152 * 6 4 3 8 8 Si 1.86796 * 120.00077 * 202.10824 * 6 4 3 9 9 H 1.48498 * 109.47386 * 59.99946 * 8 6 4 10 10 H 1.48499 * 109.46945 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47301 * 299.99874 * 8 6 4 12 12 C 1.46500 * 120.00156 * 274.05334 * 3 2 1 13 13 C 1.53006 * 109.46425 * 269.99276 * 12 3 2 14 14 N 1.46500 * 109.46425 * 179.97438 * 13 12 3 15 15 C 1.34786 * 119.99740 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00098 * 180.02562 * 15 14 13 18 18 C 1.53004 * 110.34470 * 302.28981 * 17 15 14 19 19 C 1.51103 * 110.38634 * 64.69529 * 17 15 14 20 20 C 1.30532 * 111.10093 * 135.24917 * 19 17 15 21 21 C 1.51096 * 111.10390 * 0.02562 * 20 19 17 22 22 C 1.54633 * 110.38661 * 180.02562 * 17 15 14 23 23 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46916 * 300.00101 * 1 2 3 25 25 H 1.08998 * 109.46993 * 59.99942 * 1 2 3 26 26 H 1.08997 * 109.46916 * 239.99899 * 2 1 3 27 27 H 1.09000 * 109.47274 * 120.00775 * 2 1 3 28 28 H 0.97001 * 120.00112 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47436 * 29.99257 * 12 3 2 30 30 H 1.08998 * 109.47077 * 150.00070 * 12 3 2 31 31 H 1.08996 * 109.47299 * 300.00065 * 13 12 3 32 32 H 1.08998 * 109.46844 * 60.00652 * 13 12 3 33 33 H 0.96996 * 120.00922 * 0.02562 * 14 13 12 34 34 H 1.09000 * 109.47189 * 59.29749 * 18 17 15 35 35 H 1.08996 * 109.47401 * 179.29730 * 18 17 15 36 36 H 1.09002 * 109.47414 * 299.29858 * 18 17 15 37 37 H 1.07995 * 124.45316 * 315.23279 * 19 17 15 38 38 H 1.07993 * 124.44723 * 180.02562 * 20 19 17 39 39 H 1.08999 * 110.38983 * 224.75437 * 21 20 19 40 40 H 1.08998 * 110.38814 * 102.37646 * 21 20 19 41 41 H 1.08998 * 111.03558 * 334.58132 * 22 17 15 42 42 H 1.08991 * 111.03791 * 98.48397 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3255 1.9987 1.1830 5 1 2.1566 3.0592 1.2984 6 6 2.8541 1.2618 2.2339 7 7 3.4644 0.1202 1.9957 8 14 2.7059 1.8939 3.9854 9 1 1.2712 2.0434 4.3381 10 1 3.3459 0.9293 4.9156 11 1 3.3825 3.2113 4.0952 12 6 2.1781 2.1016 -1.2655 13 6 3.5904 1.8728 -1.8078 14 7 3.7499 2.5928 -3.0737 15 6 4.9209 2.5356 -3.7386 16 8 5.8424 1.8877 -3.2891 17 6 5.0853 3.2767 -5.0404 18 6 4.0316 2.8177 -6.0504 19 6 4.9863 4.7673 -4.8136 20 6 5.9241 5.4044 -5.4605 21 6 6.8044 4.4449 -6.2269 22 6 6.5067 3.0585 -5.6087 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8342 -0.3946 2.7300 29 1 1.4480 1.7350 -1.9870 30 1 2.0211 3.1674 -1.0992 31 1 4.3205 2.2394 -1.0863 32 1 3.7474 0.8071 -1.9742 33 1 3.0128 3.1107 -3.4334 34 1 3.0363 3.0036 -5.6470 35 1 4.1554 3.3709 -6.9814 36 1 4.1525 1.7516 -6.2425 37 1 4.2378 5.2432 -4.1975 38 1 6.0538 6.4765 -5.4494 39 1 7.8549 4.7027 -6.0919 40 1 6.5436 4.4530 -7.2852 41 1 7.2144 2.8243 -4.8134 42 1 6.5077 2.2806 -6.3721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731809428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = -9.244424 kcal Electronic energy + Delta-G solvation = -20544.611149 eV Core-core repulsion = 17525.225263 eV Total energy + Delta-G solvation = -3019.385886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34605 -37.71342 -36.20494 -34.21427 -31.70769 -31.24407 -29.89025 -29.00273 -27.26391 -25.53037 -24.00940 -22.55317 -21.31100 -20.12523 -19.75893 -18.64667 -17.13181 -16.59600 -15.66875 -15.39770 -14.75645 -14.65240 -14.51718 -13.80759 -13.61251 -13.40088 -12.96573 -12.83333 -12.45906 -12.24429 -12.15579 -11.97908 -11.74983 -11.36110 -11.29326 -11.25880 -11.09189 -10.88152 -10.82269 -10.68215 -10.47438 -10.00319 -9.93532 -9.61688 -9.54158 -8.96779 -8.52892 -8.46484 -6.66436 -5.79813 -3.34424 2.05889 3.03792 3.37722 3.44025 3.44710 3.61206 4.37790 4.47808 4.52434 4.89027 4.96293 5.15822 5.21948 5.31544 5.42125 5.50216 5.53663 5.57848 5.74622 5.78386 5.95305 5.96565 6.04956 6.06839 6.24221 6.28290 6.32436 6.34985 6.53565 6.64523 6.71145 6.79591 6.86072 6.87218 7.10214 7.26091 7.75032 7.80606 7.93434 8.48400 8.63490 9.16796 9.79625 10.35103 11.21128 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.004179 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.304315 B = 6697.890179 C = 7129.641406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 N -0.579 5.579 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.140 3.860 13 C 0.098 3.902 14 N -0.723 5.723 15 C 0.519 3.481 16 O -0.541 6.541 17 C -0.061 4.061 18 C -0.130 4.130 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.102 4.102 22 C -0.107 4.107 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.020 0.980 27 H 0.100 0.900 28 H 0.256 0.744 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 7.311 -16.360 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.299 5.299 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.012 3.988 13 C -0.028 4.028 14 N -0.373 5.373 15 C 0.304 3.696 16 O -0.418 6.418 17 C -0.064 4.064 18 C -0.188 4.188 19 C -0.171 4.171 20 C -0.175 4.175 21 C -0.139 4.139 22 C -0.145 4.145 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.226 0.774 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.973 6.680 -15.868 17.245 hybrid contribution -0.417 0.573 0.823 1.086 sum 0.556 7.253 -15.045 16.712 Atomic orbital electron populations 1.22297 1.00788 0.98739 1.00360 1.20986 0.89836 0.86177 1.01938 1.43856 1.73664 1.11983 1.00415 1.19045 1.36855 0.94034 0.89371 0.91944 1.25116 0.96734 0.97838 0.99264 1.69984 1.35938 1.15823 1.30978 0.86426 0.77903 0.78180 0.84620 1.20907 1.21576 1.20729 1.21067 0.91809 0.96754 0.89154 1.22434 1.01597 0.96062 0.82665 1.46203 1.14271 1.52047 1.24812 1.20350 0.82703 0.81067 0.85522 1.90686 1.40110 1.42371 1.68610 1.20709 0.98154 0.93677 0.93883 1.21735 0.97435 1.01594 0.98033 1.23078 1.00123 0.93462 1.00482 1.23293 0.96742 0.99315 0.98164 1.21408 0.99579 0.93678 0.99185 1.22502 0.94722 0.96645 1.00652 0.94647 0.93203 0.94959 0.96156 0.88229 0.93382 0.94309 0.93494 0.91236 0.92376 0.77418 0.91944 0.91588 0.91829 0.85364 0.85555 0.90968 0.90680 0.89185 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.22 5.97 -4.05 -0.02 3.19 16 3 N -0.58 -14.17 2.45 -173.24 -0.43 -14.59 16 4 C -0.26 -7.11 9.49 -15.06 -0.14 -7.25 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.30 4.93 -17.43 -0.09 0.22 16 7 N -0.89 -25.57 11.32 55.49 0.63 -24.94 16 8 Si 0.90 21.57 29.61 -169.99 -5.03 16.53 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.14 2.82 5.80 -4.04 -0.02 2.79 16 13 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 14 N -0.72 -11.59 5.42 -60.29 -0.33 -11.92 16 15 C 0.52 8.74 6.55 -10.98 -0.07 8.67 16 16 O -0.54 -11.65 15.48 5.56 0.09 -11.56 16 17 C -0.06 -0.75 0.74 -155.76 -0.11 -0.86 16 18 C -0.13 -1.28 8.38 37.16 0.31 -0.96 16 19 C -0.15 -1.69 9.37 -35.70 -0.33 -2.02 16 20 C -0.16 -1.54 10.78 -35.70 -0.38 -1.92 16 21 C -0.10 -0.95 6.81 -26.80 -0.18 -1.13 16 22 C -0.11 -1.28 6.02 -24.98 -0.15 -1.43 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.10 2.67 5.31 -51.93 -0.28 2.39 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 31 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.39 4.96 7.80 -40.82 -0.32 4.64 16 34 H 0.06 0.55 7.49 -51.93 -0.39 0.16 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 42 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -31.41 342.01 -7.98 -39.39 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.22 Total: 3.55 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.85 Total: -1.61 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.12 Total: -51.45 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.41 -7.98 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.143 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds