Wall clock time and date at job start Mon Mar 30 2020 00:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47574 * 2 1 4 4 C 1.36940 * 119.99633 * 94.04490 * 3 2 1 5 5 H 1.08004 * 120.00023 * 213.75687 * 4 3 2 6 6 C 1.38812 * 120.00176 * 33.76110 * 4 3 2 7 7 N 1.31618 * 119.99823 * 22.38152 * 6 4 3 8 8 Si 1.86796 * 120.00077 * 202.10824 * 6 4 3 9 9 H 1.48498 * 109.47386 * 59.99946 * 8 6 4 10 10 H 1.48499 * 109.46945 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47301 * 299.99874 * 8 6 4 12 12 C 1.46500 * 120.00156 * 274.05334 * 3 2 1 13 13 C 1.53006 * 109.46425 * 269.99276 * 12 3 2 14 14 N 1.46500 * 109.46425 * 179.97438 * 13 12 3 15 15 C 1.34786 * 119.99740 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99879 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00098 * 180.02562 * 15 14 13 18 18 C 1.53004 * 110.34470 * 302.28981 * 17 15 14 19 19 C 1.51103 * 110.38634 * 64.69529 * 17 15 14 20 20 C 1.30532 * 111.10093 * 135.24917 * 19 17 15 21 21 C 1.51096 * 111.10390 * 0.02562 * 20 19 17 22 22 C 1.54633 * 110.38661 * 180.02562 * 17 15 14 23 23 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46916 * 300.00101 * 1 2 3 25 25 H 1.08998 * 109.46993 * 59.99942 * 1 2 3 26 26 H 1.08997 * 109.46916 * 239.99899 * 2 1 3 27 27 H 1.09000 * 109.47274 * 120.00775 * 2 1 3 28 28 H 0.97001 * 120.00112 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47436 * 29.99257 * 12 3 2 30 30 H 1.08998 * 109.47077 * 150.00070 * 12 3 2 31 31 H 1.08996 * 109.47299 * 300.00065 * 13 12 3 32 32 H 1.08998 * 109.46844 * 60.00652 * 13 12 3 33 33 H 0.96996 * 120.00922 * 0.02562 * 14 13 12 34 34 H 1.09000 * 109.47189 * 59.29749 * 18 17 15 35 35 H 1.08996 * 109.47401 * 179.29730 * 18 17 15 36 36 H 1.09002 * 109.47414 * 299.29858 * 18 17 15 37 37 H 1.07995 * 124.45316 * 315.23279 * 19 17 15 38 38 H 1.07993 * 124.44723 * 180.02562 * 20 19 17 39 39 H 1.08999 * 110.38983 * 224.75437 * 21 20 19 40 40 H 1.08998 * 110.38814 * 102.37646 * 21 20 19 41 41 H 1.08998 * 111.03558 * 334.58132 * 22 17 15 42 42 H 1.08991 * 111.03791 * 98.48397 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3255 1.9987 1.1830 5 1 2.1566 3.0592 1.2984 6 6 2.8541 1.2618 2.2339 7 7 3.4644 0.1202 1.9957 8 14 2.7059 1.8939 3.9854 9 1 1.2712 2.0434 4.3381 10 1 3.3459 0.9293 4.9156 11 1 3.3825 3.2113 4.0952 12 6 2.1781 2.1016 -1.2655 13 6 3.5904 1.8728 -1.8078 14 7 3.7499 2.5928 -3.0737 15 6 4.9209 2.5356 -3.7386 16 8 5.8424 1.8877 -3.2891 17 6 5.0853 3.2767 -5.0404 18 6 4.0316 2.8177 -6.0504 19 6 4.9863 4.7673 -4.8136 20 6 5.9241 5.4044 -5.4605 21 6 6.8044 4.4449 -6.2269 22 6 6.5067 3.0585 -5.6087 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8342 -0.3946 2.7300 29 1 1.4480 1.7350 -1.9870 30 1 2.0211 3.1674 -1.0992 31 1 4.3205 2.2394 -1.0863 32 1 3.7474 0.8071 -1.9742 33 1 3.0128 3.1107 -3.4334 34 1 3.0363 3.0036 -5.6470 35 1 4.1554 3.3709 -6.9814 36 1 4.1525 1.7516 -6.2425 37 1 4.2378 5.2432 -4.1975 38 1 6.0538 6.4765 -5.4494 39 1 7.8549 4.7027 -6.0919 40 1 6.5436 4.4530 -7.2852 41 1 7.2144 2.8243 -4.8134 42 1 6.5077 2.2806 -6.3721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731809428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:33 Heat of formation + Delta-G solvation = -28.652559 kcal Electronic energy + Delta-G solvation = -20545.452749 eV Core-core repulsion = 17525.225263 eV Total energy + Delta-G solvation = -3020.227486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51653 -38.91987 -37.98762 -35.83584 -33.53584 -32.45932 -31.41719 -29.92994 -28.96970 -26.51347 -25.81758 -24.14847 -22.65169 -21.89515 -20.76520 -19.78297 -18.61591 -18.11946 -17.12779 -16.70888 -16.58104 -16.05055 -15.84145 -15.52701 -15.22118 -14.58315 -14.29148 -14.01677 -13.94659 -13.73480 -13.36467 -13.22262 -12.98397 -12.85050 -12.64028 -12.59994 -12.46810 -12.30854 -12.21267 -12.15935 -11.96016 -11.75538 -11.70910 -11.47413 -10.84797 -10.53317 -10.07102 -9.86272 -8.67009 -7.85708 -5.44094 1.23246 1.46307 1.48287 1.55202 1.71955 2.23868 2.52705 3.23200 3.46592 3.59380 3.75835 3.97517 4.04106 4.24143 4.30861 4.35563 4.40956 4.55620 4.63988 4.67372 4.78828 4.80511 4.91915 4.94585 4.97640 4.99209 5.07337 5.15777 5.17030 5.20017 5.23674 5.32995 5.48924 5.53878 5.55732 5.65798 5.87112 5.93742 6.43248 6.61138 7.13480 7.30371 7.83340 8.32875 9.12095 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.004179 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.304315 B = 6697.890179 C = 7129.641406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.133 3.867 3 N -0.596 5.596 4 C -0.269 4.269 5 H 0.064 0.936 6 C -0.041 4.041 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.295 1.295 11 H -0.277 1.277 12 C 0.144 3.856 13 C 0.120 3.880 14 N -0.707 5.707 15 C 0.512 3.488 16 O -0.596 6.596 17 C -0.053 4.053 18 C -0.128 4.128 19 C -0.176 4.176 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.115 4.115 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.251 0.749 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 9.291 -18.348 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 N -0.317 5.317 4 C -0.400 4.400 5 H 0.081 0.919 6 C -0.238 4.238 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.202 1.202 12 C 0.017 3.983 13 C -0.007 4.007 14 N -0.359 5.359 15 C 0.300 3.700 16 O -0.477 6.477 17 C -0.056 4.056 18 C -0.185 4.185 19 C -0.195 4.195 20 C -0.162 4.162 21 C -0.134 4.134 22 C -0.153 4.153 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.522 8.702 -17.896 19.907 hybrid contribution 0.089 -0.035 1.355 1.359 sum -0.433 8.667 -16.541 18.679 Atomic orbital electron populations 1.22093 0.97592 1.00334 1.00615 1.20932 0.92302 0.85684 1.00316 1.44095 1.73964 1.12334 1.01268 1.19335 1.35793 0.94203 0.90628 0.91850 1.25832 0.96955 0.98248 1.02728 1.70140 1.37494 1.17230 1.31509 0.85465 0.78013 0.77460 0.80268 1.20039 1.22137 1.20231 1.21160 0.91792 0.97187 0.88136 1.21858 1.00747 0.94430 0.83648 1.45939 1.15184 1.51598 1.23192 1.21358 0.81661 0.80244 0.86767 1.90663 1.41902 1.44801 1.70326 1.20748 0.99286 0.94143 0.91441 1.21770 0.96997 1.01474 0.98263 1.23122 1.01715 0.92335 1.02281 1.23591 0.95350 1.00518 0.96720 1.21444 1.00079 0.91587 1.00324 1.22539 0.93785 0.98921 1.00054 0.92430 0.94589 0.92883 0.96111 0.91641 0.93998 0.91150 0.92138 0.95860 0.95354 0.74919 0.90768 0.89149 0.92498 0.84523 0.83227 0.90248 0.88107 0.92674 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.24 71.98 0.74 -4.90 16 2 C 0.13 6.31 5.97 86.38 0.52 6.83 16 3 N -0.60 -29.23 2.45 -702.02 -1.72 -30.95 16 4 C -0.27 -14.65 9.49 84.03 0.80 -13.86 16 5 H 0.06 3.38 7.92 -2.91 -0.02 3.35 16 6 C -0.04 -2.27 4.93 84.86 0.42 -1.85 16 7 N -0.92 -54.98 11.32 21.65 0.25 -54.73 16 8 Si 0.96 44.96 29.61 68.60 2.03 46.99 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.14 5.67 5.80 86.38 0.50 6.18 16 13 C 0.12 5.05 6.00 86.38 0.52 5.57 16 14 N -0.71 -22.48 5.42 -463.05 -2.51 -24.99 16 15 C 0.51 17.49 6.55 87.66 0.57 18.07 16 16 O -0.60 -27.06 15.48 -3.03 -0.05 -27.11 16 17 C -0.05 -1.24 0.74 -52.99 -0.04 -1.27 16 18 C -0.13 -2.16 8.38 71.98 0.60 -1.56 16 19 C -0.18 -3.47 9.37 26.26 0.25 -3.22 16 20 C -0.14 -2.37 10.78 26.25 0.28 -2.09 16 21 C -0.10 -1.56 6.81 30.55 0.21 -1.35 16 22 C -0.12 -2.65 6.02 31.73 0.19 -2.46 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.02 0.95 8.10 -2.39 -0.02 0.93 16 27 H 0.07 3.61 5.31 -2.39 -0.01 3.60 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.41 9.64 7.80 -92.71 -0.72 8.92 16 34 H 0.07 1.08 7.49 -2.39 -0.02 1.06 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.66 6.99 -2.39 -0.02 1.64 16 42 H 0.09 1.74 7.89 -2.39 -0.02 1.72 16 Total: -1.00 -71.57 342.01 3.81 -67.76 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.26 Total: 18.95 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.55 Total: 4.08 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.99 Total: -110.68 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.57 3.81 -67.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.108 kcal (2) G-P(sol) polarization free energy of solvation -71.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds