Wall clock time and date at job start Mon Mar 30 2020 00:45:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46494 * 109.47574 * 2 1
4 4 C 1.36940 * 119.99633 * 94.04490 * 3 2 1
5 5 H 1.08004 * 120.00023 * 213.75687 * 4 3 2
6 6 C 1.38812 * 120.00176 * 33.76110 * 4 3 2
7 7 N 1.31618 * 119.99823 * 22.38152 * 6 4 3
8 8 Si 1.86796 * 120.00077 * 202.10824 * 6 4 3
9 9 H 1.48498 * 109.47386 * 59.99946 * 8 6 4
10 10 H 1.48499 * 109.46945 * 179.97438 * 8 6 4
11 11 H 1.48502 * 109.47301 * 299.99874 * 8 6 4
12 12 C 1.46500 * 120.00156 * 274.05334 * 3 2 1
13 13 C 1.53006 * 109.46425 * 269.99276 * 12 3 2
14 14 N 1.46500 * 109.46425 * 179.97438 * 13 12 3
15 15 C 1.34786 * 119.99740 * 180.02562 * 14 13 12
16 16 O 1.21280 * 119.99879 * 0.02562 * 15 14 13
17 17 C 1.50698 * 120.00098 * 180.02562 * 15 14 13
18 18 C 1.53004 * 110.34470 * 302.28981 * 17 15 14
19 19 C 1.51103 * 110.38634 * 64.69529 * 17 15 14
20 20 C 1.30532 * 111.10093 * 135.24917 * 19 17 15
21 21 C 1.51096 * 111.10390 * 0.02562 * 20 19 17
22 22 C 1.54633 * 110.38661 * 180.02562 * 17 15 14
23 23 H 1.09001 * 109.47545 * 179.97438 * 1 2 3
24 24 H 1.08997 * 109.46916 * 300.00101 * 1 2 3
25 25 H 1.08998 * 109.46993 * 59.99942 * 1 2 3
26 26 H 1.08997 * 109.46916 * 239.99899 * 2 1 3
27 27 H 1.09000 * 109.47274 * 120.00775 * 2 1 3
28 28 H 0.97001 * 120.00112 * 179.97438 * 7 6 4
29 29 H 1.08996 * 109.47436 * 29.99257 * 12 3 2
30 30 H 1.08998 * 109.47077 * 150.00070 * 12 3 2
31 31 H 1.08996 * 109.47299 * 300.00065 * 13 12 3
32 32 H 1.08998 * 109.46844 * 60.00652 * 13 12 3
33 33 H 0.96996 * 120.00922 * 0.02562 * 14 13 12
34 34 H 1.09000 * 109.47189 * 59.29749 * 18 17 15
35 35 H 1.08996 * 109.47401 * 179.29730 * 18 17 15
36 36 H 1.09002 * 109.47414 * 299.29858 * 18 17 15
37 37 H 1.07995 * 124.45316 * 315.23279 * 19 17 15
38 38 H 1.07993 * 124.44723 * 180.02562 * 20 19 17
39 39 H 1.08999 * 110.38983 * 224.75437 * 21 20 19
40 40 H 1.08998 * 110.38814 * 102.37646 * 21 20 19
41 41 H 1.08998 * 111.03558 * 334.58132 * 22 17 15
42 42 H 1.08991 * 111.03791 * 98.48397 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.3255 1.9987 1.1830
5 1 2.1566 3.0592 1.2984
6 6 2.8541 1.2618 2.2339
7 7 3.4644 0.1202 1.9957
8 14 2.7059 1.8939 3.9854
9 1 1.2712 2.0434 4.3381
10 1 3.3459 0.9293 4.9156
11 1 3.3825 3.2113 4.0952
12 6 2.1781 2.1016 -1.2655
13 6 3.5904 1.8728 -1.8078
14 7 3.7499 2.5928 -3.0737
15 6 4.9209 2.5356 -3.7386
16 8 5.8424 1.8877 -3.2891
17 6 5.0853 3.2767 -5.0404
18 6 4.0316 2.8177 -6.0504
19 6 4.9863 4.7673 -4.8136
20 6 5.9241 5.4044 -5.4605
21 6 6.8044 4.4449 -6.2269
22 6 6.5067 3.0585 -5.6087
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8899
28 1 3.8342 -0.3946 2.7300
29 1 1.4480 1.7350 -1.9870
30 1 2.0211 3.1674 -1.0992
31 1 4.3205 2.2394 -1.0863
32 1 3.7474 0.8071 -1.9742
33 1 3.0128 3.1107 -3.4334
34 1 3.0363 3.0036 -5.6470
35 1 4.1554 3.3709 -6.9814
36 1 4.1525 1.7516 -6.2425
37 1 4.2378 5.2432 -4.1975
38 1 6.0538 6.4765 -5.4494
39 1 7.8549 4.7027 -6.0919
40 1 6.5436 4.4530 -7.2852
41 1 7.2144 2.8243 -4.8134
42 1 6.5077 2.2806 -6.3721
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731809428.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:45:33
Heat of formation + Delta-G solvation = -28.652559 kcal
Electronic energy + Delta-G solvation = -20545.452749 eV
Core-core repulsion = 17525.225263 eV
Total energy + Delta-G solvation = -3020.227486 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.51653 -38.91987 -37.98762 -35.83584 -33.53584 -32.45932 -31.41719 -29.92994
-28.96970 -26.51347 -25.81758 -24.14847 -22.65169 -21.89515 -20.76520 -19.78297
-18.61591 -18.11946 -17.12779 -16.70888 -16.58104 -16.05055 -15.84145 -15.52701
-15.22118 -14.58315 -14.29148 -14.01677 -13.94659 -13.73480 -13.36467 -13.22262
-12.98397 -12.85050 -12.64028 -12.59994 -12.46810 -12.30854 -12.21267 -12.15935
-11.96016 -11.75538 -11.70910 -11.47413 -10.84797 -10.53317 -10.07102 -9.86272
-8.67009 -7.85708 -5.44094 1.23246 1.46307 1.48287 1.55202 1.71955
2.23868 2.52705 3.23200 3.46592 3.59380 3.75835 3.97517 4.04106
4.24143 4.30861 4.35563 4.40956 4.55620 4.63988 4.67372 4.78828
4.80511 4.91915 4.94585 4.97640 4.99209 5.07337 5.15777 5.17030
5.20017 5.23674 5.32995 5.48924 5.53878 5.55732 5.65798 5.87112
5.93742 6.43248 6.61138 7.13480 7.30371 7.83340 8.32875 9.12095
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.026526 B = 0.004179 C = 0.003926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1055.304315 B = 6697.890179 C = 7129.641406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.133 3.867
3 N -0.596 5.596
4 C -0.269 4.269
5 H 0.064 0.936
6 C -0.041 4.041
7 N -0.920 5.920
8 Si 0.960 3.040
9 H -0.275 1.275
10 H -0.295 1.295
11 H -0.277 1.277
12 C 0.144 3.856
13 C 0.120 3.880
14 N -0.707 5.707
15 C 0.512 3.488
16 O -0.596 6.596
17 C -0.053 4.053
18 C -0.128 4.128
19 C -0.176 4.176
20 C -0.144 4.144
21 C -0.098 4.098
22 C -0.115 4.115
23 H 0.057 0.943
24 H 0.035 0.965
25 H 0.052 0.948
26 H 0.020 0.980
27 H 0.066 0.934
28 H 0.251 0.749
29 H 0.070 0.930
30 H 0.060 0.940
31 H 0.023 0.977
32 H 0.028 0.972
33 H 0.414 0.586
34 H 0.073 0.927
35 H 0.090 0.910
36 H 0.056 0.944
37 H 0.137 0.863
38 H 0.150 0.850
39 H 0.079 0.921
40 H 0.101 0.899
41 H 0.054 0.946
42 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.215 9.291 -18.348 20.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.008 3.992
3 N -0.317 5.317
4 C -0.400 4.400
5 H 0.081 0.919
6 C -0.238 4.238
7 N -0.564 5.564
8 Si 0.788 3.212
9 H -0.200 1.200
10 H -0.221 1.221
11 H -0.202 1.202
12 C 0.017 3.983
13 C -0.007 4.007
14 N -0.359 5.359
15 C 0.300 3.700
16 O -0.477 6.477
17 C -0.056 4.056
18 C -0.185 4.185
19 C -0.195 4.195
20 C -0.162 4.162
21 C -0.134 4.134
22 C -0.153 4.153
23 H 0.076 0.924
24 H 0.054 0.946
25 H 0.071 0.929
26 H 0.039 0.961
27 H 0.084 0.916
28 H 0.060 0.940
29 H 0.089 0.911
30 H 0.079 0.921
31 H 0.041 0.959
32 H 0.046 0.954
33 H 0.251 0.749
34 H 0.092 0.908
35 H 0.109 0.891
36 H 0.075 0.925
37 H 0.155 0.845
38 H 0.168 0.832
39 H 0.098 0.902
40 H 0.119 0.881
41 H 0.073 0.927
42 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -0.522 8.702 -17.896 19.907
hybrid contribution 0.089 -0.035 1.355 1.359
sum -0.433 8.667 -16.541 18.679
Atomic orbital electron populations
1.22093 0.97592 1.00334 1.00615 1.20932 0.92302 0.85684 1.00316
1.44095 1.73964 1.12334 1.01268 1.19335 1.35793 0.94203 0.90628
0.91850 1.25832 0.96955 0.98248 1.02728 1.70140 1.37494 1.17230
1.31509 0.85465 0.78013 0.77460 0.80268 1.20039 1.22137 1.20231
1.21160 0.91792 0.97187 0.88136 1.21858 1.00747 0.94430 0.83648
1.45939 1.15184 1.51598 1.23192 1.21358 0.81661 0.80244 0.86767
1.90663 1.41902 1.44801 1.70326 1.20748 0.99286 0.94143 0.91441
1.21770 0.96997 1.01474 0.98263 1.23122 1.01715 0.92335 1.02281
1.23591 0.95350 1.00518 0.96720 1.21444 1.00079 0.91587 1.00324
1.22539 0.93785 0.98921 1.00054 0.92430 0.94589 0.92883 0.96111
0.91641 0.93998 0.91150 0.92138 0.95860 0.95354 0.74919 0.90768
0.89149 0.92498 0.84523 0.83227 0.90248 0.88107 0.92674 0.89565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.64 10.24 71.98 0.74 -4.90 16
2 C 0.13 6.31 5.97 86.38 0.52 6.83 16
3 N -0.60 -29.23 2.45 -702.02 -1.72 -30.95 16
4 C -0.27 -14.65 9.49 84.03 0.80 -13.86 16
5 H 0.06 3.38 7.92 -2.91 -0.02 3.35 16
6 C -0.04 -2.27 4.93 84.86 0.42 -1.85 16
7 N -0.92 -54.98 11.32 21.65 0.25 -54.73 16
8 Si 0.96 44.96 29.61 68.60 2.03 46.99 16
9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
10 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16
11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
12 C 0.14 5.67 5.80 86.38 0.50 6.18 16
13 C 0.12 5.05 6.00 86.38 0.52 5.57 16
14 N -0.71 -22.48 5.42 -463.05 -2.51 -24.99 16
15 C 0.51 17.49 6.55 87.66 0.57 18.07 16
16 O -0.60 -27.06 15.48 -3.03 -0.05 -27.11 16
17 C -0.05 -1.24 0.74 -52.99 -0.04 -1.27 16
18 C -0.13 -2.16 8.38 71.98 0.60 -1.56 16
19 C -0.18 -3.47 9.37 26.26 0.25 -3.22 16
20 C -0.14 -2.37 10.78 26.25 0.28 -2.09 16
21 C -0.10 -1.56 6.81 30.55 0.21 -1.35 16
22 C -0.12 -2.65 6.02 31.73 0.19 -2.46 16
23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
24 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16
25 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16
26 H 0.02 0.95 8.10 -2.39 -0.02 0.93 16
27 H 0.07 3.61 5.31 -2.39 -0.01 3.60 16
28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16
30 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16
31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16
33 H 0.41 9.64 7.80 -92.71 -0.72 8.92 16
34 H 0.07 1.08 7.49 -2.39 -0.02 1.06 16
35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16
38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16
39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
41 H 0.05 1.66 6.99 -2.39 -0.02 1.64 16
42 H 0.09 1.74 7.89 -2.39 -0.02 1.72 16
Total: -1.00 -71.57 342.01 3.81 -67.76
By element:
Atomic # 1 Polarization: 18.70 SS G_CDS: 0.26 Total: 18.95 kcal
Atomic # 6 Polarization: -1.48 SS G_CDS: 5.55 Total: 4.08 kcal
Atomic # 7 Polarization: -106.69 SS G_CDS: -3.99 Total: -110.68 kcal
Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal
Total: -71.57 3.81 -67.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731809428.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.108 kcal
(2) G-P(sol) polarization free energy of solvation -71.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds