Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00108 * 2 1 4 4 H 1.08001 * 120.00103 * 203.22776 * 3 2 1 5 5 C 1.38808 * 119.99778 * 23.22513 * 3 2 1 6 6 N 1.31620 * 120.00091 * 13.88569 * 5 3 2 7 7 Si 1.86801 * 119.99843 * 193.88438 * 5 3 2 8 8 H 1.48503 * 109.47434 * 60.00311 * 7 5 3 9 9 H 1.48506 * 109.47194 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47275 * 299.99830 * 7 5 3 11 11 C 1.46500 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47166 * 89.99511 * 11 2 1 13 13 H 1.08999 * 110.88206 * 51.12405 * 12 11 2 14 14 C 1.55151 * 111.00876 * 287.19719 * 12 11 2 15 15 C 1.54316 * 102.94530 * 206.42506 * 14 12 11 16 16 N 1.47023 * 107.27042 * 22.19315 * 15 14 12 17 17 C 1.34777 * 125.64594 * 181.02187 * 16 15 14 18 18 O 1.21281 * 119.99763 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00459 * 0.04480 * 17 16 15 20 20 C 1.53779 * 113.61500 * 277.49697 * 19 17 16 21 21 C 1.53777 * 87.08086 * 220.01671 * 20 19 17 22 22 C 1.53776 * 87.08224 * 25.43223 * 21 20 19 23 23 C 1.47418 * 108.70393 * 1.06299 * 16 15 14 24 24 H 1.08999 * 109.47239 * 275.16322 * 1 2 3 25 25 H 1.08999 * 109.46932 * 35.16362 * 1 2 3 26 26 H 1.09003 * 109.47287 * 155.16257 * 1 2 3 27 27 H 0.97005 * 119.99966 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47187 * 210.00240 * 11 2 1 29 29 H 1.09003 * 109.46885 * 329.99983 * 11 2 1 30 30 H 1.09008 * 110.71769 * 324.79210 * 14 12 11 31 31 H 1.08997 * 110.71884 * 88.05881 * 14 12 11 32 32 H 1.09002 * 109.88456 * 262.77701 * 15 14 12 33 33 H 1.08997 * 109.88252 * 141.61040 * 15 14 12 34 34 H 1.09005 * 112.84825 * 48.79601 * 19 17 16 35 35 H 1.08999 * 113.61178 * 334.56733 * 20 19 17 36 36 H 1.08997 * 113.61640 * 105.46796 * 20 19 17 37 37 H 1.09002 * 113.61362 * 270.87798 * 21 20 19 38 38 H 1.09000 * 113.61653 * 139.98421 * 21 20 19 39 39 H 1.09006 * 113.61264 * 220.01996 * 22 21 20 40 40 H 1.08998 * 113.69022 * 89.12963 * 22 21 20 41 41 H 1.09003 * 110.36576 * 217.03747 * 23 16 15 42 42 H 1.08998 * 110.46822 * 94.75655 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1641 1.2238 -0.3689 5 6 1.5400 2.3393 0.4741 6 7 0.4249 2.2565 1.1684 7 14 2.3022 4.0090 0.1266 8 1 2.3803 4.2218 -1.3410 9 1 1.4646 5.0723 0.7376 10 1 3.6678 4.0604 0.7077 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 2.9024 -0.9034 -2.0223 14 6 1.1450 -2.2123 -2.1105 15 6 1.6600 -3.1937 -3.1843 16 7 3.0032 -3.6265 -2.7718 17 6 3.8003 -4.4719 -3.4548 18 8 4.8940 -4.7606 -3.0175 19 6 3.3327 -5.0582 -4.7619 20 6 2.4234 -6.2871 -4.5957 21 6 3.1679 -6.9019 -5.7925 22 6 4.3562 -6.0019 -5.4150 23 6 3.3333 -2.9834 -1.4870 24 1 -0.3634 0.0925 1.0235 25 1 -0.3633 0.8401 -0.5918 26 1 -0.3634 -0.9326 -0.4317 27 1 -0.0014 3.0626 1.4993 28 1 3.1500 -1.1386 0.5134 29 1 1.6084 -2.0286 0.5129 30 1 0.5160 -2.7290 -1.3856 31 1 0.6047 -1.3854 -2.5713 32 1 1.7127 -2.6920 -4.1505 33 1 0.9959 -4.0558 -3.2476 34 1 2.9337 -4.3072 -5.4439 35 1 2.5816 -6.8240 -3.6604 36 1 1.3715 -6.0820 -4.7944 37 1 2.7228 -6.6560 -6.7567 38 1 3.3730 -7.9664 -5.6791 39 1 4.8647 -5.5665 -6.2753 40 1 5.0439 -6.4597 -4.7040 41 1 4.3894 -2.7153 -1.4573 42 1 3.0868 -3.6439 -0.6557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753347022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = 3.235477 kcal Electronic energy + Delta-G solvation = -20628.093468 eV Core-core repulsion = 17609.248752 eV Total energy + Delta-G solvation = -3018.844717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42173 -38.42054 -36.93643 -35.32977 -32.28030 -30.45104 -29.23956 -27.25335 -25.95075 -25.83586 -24.99337 -22.97822 -21.23153 -20.25399 -19.78711 -18.87225 -17.40058 -16.57899 -16.04844 -15.65577 -15.50917 -14.88168 -14.17707 -13.66274 -13.60356 -13.46744 -13.18609 -12.79761 -12.65976 -12.44078 -12.29175 -12.00397 -11.95363 -11.39186 -11.29882 -11.04305 -10.89123 -10.76901 -10.72066 -10.61747 -10.46947 -10.30994 -10.05307 -9.86837 -9.81279 -9.61653 -8.55162 -8.49982 -6.72780 -5.71776 -3.18731 2.66290 3.09494 3.39275 3.44613 3.45713 4.30080 4.38342 4.44668 4.50383 4.59027 4.80160 4.87306 5.11689 5.14846 5.33501 5.39983 5.41935 5.48116 5.53719 5.58326 5.62649 5.73307 5.75241 5.87447 5.89599 5.99393 6.09522 6.16915 6.24072 6.28822 6.40829 6.54988 6.73185 6.75529 6.90577 7.35310 7.64326 7.72775 7.81281 8.24486 8.40913 9.24701 9.88259 10.37093 11.32677 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038535 B = 0.003746 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.446442 B = 7473.445097 C = 7707.037575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.163 3.837 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.118 4.118 15 C 0.101 3.899 16 N -0.614 5.614 17 C 0.534 3.466 18 O -0.548 6.548 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.118 4.118 23 C 0.108 3.892 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.001 0.999 27 H 0.252 0.748 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -15.475 -12.174 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.034 3.966 12 C -0.140 4.140 13 H 0.101 0.899 14 C -0.156 4.156 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.323 3.677 18 O -0.426 6.426 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.179 4.179 22 C -0.156 4.156 23 C -0.015 4.015 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.169 -15.523 -11.882 19.583 hybrid contribution 0.208 1.160 -0.206 1.196 sum 1.377 -14.363 -12.088 18.823 Atomic orbital electron populations 1.20814 0.82707 0.95377 0.99389 1.43833 1.01756 1.00514 1.86025 1.19140 0.98420 0.85680 1.35398 0.91531 1.25005 0.98003 0.98486 0.98059 1.70063 1.20191 1.27305 1.37647 0.86362 0.78467 0.83929 0.77937 1.21136 1.21674 1.20921 1.20616 0.96351 0.88601 0.90995 1.23214 0.93910 0.95085 1.01753 0.89881 1.22637 0.98176 0.97838 0.96933 1.22116 0.83163 0.97985 0.98929 1.48610 1.17554 1.45265 1.23294 1.20161 0.83962 0.77928 0.85681 1.90672 1.21212 1.60627 1.70068 1.22758 1.00093 0.97570 0.95170 1.22796 0.98536 0.95166 0.99484 1.22827 0.97219 0.99696 0.98149 1.22809 0.96253 0.96177 1.00389 1.22347 1.00405 0.94020 0.84686 0.95255 0.94390 0.98064 0.93739 0.93173 0.94327 0.90933 0.89882 0.91826 0.91833 0.87195 0.89759 0.90727 0.89927 0.91040 0.91121 0.88738 0.90838 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 8.75 59.85 0.52 4.34 16 2 N -0.60 -14.52 2.89 -181.11 -0.52 -15.04 16 3 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 4 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 5 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 6 N -0.91 -26.28 10.77 55.49 0.60 -25.68 16 7 Si 0.90 21.77 29.58 -169.99 -5.03 16.75 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 C 0.16 3.19 5.15 -4.04 -0.02 3.17 16 12 C -0.12 -1.94 3.26 -88.47 -0.29 -2.23 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 14 C -0.12 -1.66 5.09 -24.90 -0.13 -1.79 16 15 C 0.10 1.20 6.45 -3.07 -0.02 1.18 16 16 N -0.61 -8.68 3.33 -170.53 -0.57 -9.25 16 17 C 0.53 7.77 7.37 -10.99 -0.08 7.69 16 18 O -0.55 -9.94 16.15 5.56 0.09 -9.85 16 19 C -0.13 -1.41 3.36 -90.96 -0.31 -1.72 16 20 C -0.12 -1.05 7.63 -25.92 -0.20 -1.25 16 21 C -0.14 -1.07 8.08 -25.92 -0.21 -1.28 16 22 C -0.12 -1.15 7.41 -25.92 -0.19 -1.34 16 23 C 0.11 1.66 6.38 -2.53 -0.02 1.64 16 24 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16 25 H 0.04 0.96 7.38 -51.93 -0.38 0.58 16 26 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.04 0.71 7.90 -51.93 -0.41 0.30 16 30 H 0.07 1.00 7.54 -51.92 -0.39 0.61 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.08 7.43 -51.93 -0.39 0.69 16 41 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 42 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -31.10 333.43 -8.89 -39.99 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.31 Total: -3.24 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.17 Total: 1.30 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.49 Total: -49.97 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.10 -8.89 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753347022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds