Wall clock time and date at job start Mon Mar 30 2020 01:30:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36939 * 120.00108 * 2 1
4 4 H 1.08001 * 120.00103 * 203.22776 * 3 2 1
5 5 C 1.38808 * 119.99778 * 23.22513 * 3 2 1
6 6 N 1.31620 * 120.00091 * 13.88569 * 5 3 2
7 7 Si 1.86801 * 119.99843 * 193.88438 * 5 3 2
8 8 H 1.48503 * 109.47434 * 60.00311 * 7 5 3
9 9 H 1.48506 * 109.47194 * 180.02562 * 7 5 3
10 10 H 1.48501 * 109.47275 * 299.99830 * 7 5 3
11 11 C 1.46500 * 120.00195 * 180.02562 * 2 1 3
12 12 C 1.53001 * 109.47166 * 89.99511 * 11 2 1
13 13 H 1.08999 * 110.88206 * 51.12405 * 12 11 2
14 14 C 1.55151 * 111.00876 * 287.19719 * 12 11 2
15 15 C 1.54316 * 102.94530 * 206.42506 * 14 12 11
16 16 N 1.47023 * 107.27042 * 22.19315 * 15 14 12
17 17 C 1.34777 * 125.64594 * 181.02187 * 16 15 14
18 18 O 1.21281 * 119.99763 * 180.02562 * 17 16 15
19 19 C 1.50694 * 120.00459 * 0.04480 * 17 16 15
20 20 C 1.53779 * 113.61500 * 277.49697 * 19 17 16
21 21 C 1.53777 * 87.08086 * 220.01671 * 20 19 17
22 22 C 1.53776 * 87.08224 * 25.43223 * 21 20 19
23 23 C 1.47418 * 108.70393 * 1.06299 * 16 15 14
24 24 H 1.08999 * 109.47239 * 275.16322 * 1 2 3
25 25 H 1.08999 * 109.46932 * 35.16362 * 1 2 3
26 26 H 1.09003 * 109.47287 * 155.16257 * 1 2 3
27 27 H 0.97005 * 119.99966 * 180.02562 * 6 5 3
28 28 H 1.09004 * 109.47187 * 210.00240 * 11 2 1
29 29 H 1.09003 * 109.46885 * 329.99983 * 11 2 1
30 30 H 1.09008 * 110.71769 * 324.79210 * 14 12 11
31 31 H 1.08997 * 110.71884 * 88.05881 * 14 12 11
32 32 H 1.09002 * 109.88456 * 262.77701 * 15 14 12
33 33 H 1.08997 * 109.88252 * 141.61040 * 15 14 12
34 34 H 1.09005 * 112.84825 * 48.79601 * 19 17 16
35 35 H 1.08999 * 113.61178 * 334.56733 * 20 19 17
36 36 H 1.08997 * 113.61640 * 105.46796 * 20 19 17
37 37 H 1.09002 * 113.61362 * 270.87798 * 21 20 19
38 38 H 1.09000 * 113.61653 * 139.98421 * 21 20 19
39 39 H 1.09006 * 113.61264 * 220.01996 * 22 21 20
40 40 H 1.08998 * 113.69022 * 89.12963 * 22 21 20
41 41 H 1.09003 * 110.36576 * 217.03747 * 23 16 15
42 42 H 1.08998 * 110.46822 * 94.75655 * 23 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1641 1.2238 -0.3689
5 6 1.5400 2.3393 0.4741
6 7 0.4249 2.2565 1.1684
7 14 2.3022 4.0090 0.1266
8 1 2.3803 4.2218 -1.3410
9 1 1.4646 5.0723 0.7376
10 1 3.6678 4.0604 0.7077
11 6 2.1975 -1.2687 -0.0006
12 6 2.4525 -1.7098 -1.4433
13 1 2.9024 -0.9034 -2.0223
14 6 1.1450 -2.2123 -2.1105
15 6 1.6600 -3.1937 -3.1843
16 7 3.0032 -3.6265 -2.7718
17 6 3.8003 -4.4719 -3.4548
18 8 4.8940 -4.7606 -3.0175
19 6 3.3327 -5.0582 -4.7619
20 6 2.4234 -6.2871 -4.5957
21 6 3.1679 -6.9019 -5.7925
22 6 4.3562 -6.0019 -5.4150
23 6 3.3333 -2.9834 -1.4870
24 1 -0.3634 0.0925 1.0235
25 1 -0.3633 0.8401 -0.5918
26 1 -0.3634 -0.9326 -0.4317
27 1 -0.0014 3.0626 1.4993
28 1 3.1500 -1.1386 0.5134
29 1 1.6084 -2.0286 0.5129
30 1 0.5160 -2.7290 -1.3856
31 1 0.6047 -1.3854 -2.5713
32 1 1.7127 -2.6920 -4.1505
33 1 0.9959 -4.0558 -3.2476
34 1 2.9337 -4.3072 -5.4439
35 1 2.5816 -6.8240 -3.6604
36 1 1.3715 -6.0820 -4.7944
37 1 2.7228 -6.6560 -6.7567
38 1 3.3730 -7.9664 -5.6791
39 1 4.8647 -5.5665 -6.2753
40 1 5.0439 -6.4597 -4.7040
41 1 4.3894 -2.7153 -1.4573
42 1 3.0868 -3.6439 -0.6557
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753347022.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:30:06
Heat of formation + Delta-G solvation = 3.235477 kcal
Electronic energy + Delta-G solvation = -20628.093468 eV
Core-core repulsion = 17609.248752 eV
Total energy + Delta-G solvation = -3018.844717 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.42173 -38.42054 -36.93643 -35.32977 -32.28030 -30.45104 -29.23956 -27.25335
-25.95075 -25.83586 -24.99337 -22.97822 -21.23153 -20.25399 -19.78711 -18.87225
-17.40058 -16.57899 -16.04844 -15.65577 -15.50917 -14.88168 -14.17707 -13.66274
-13.60356 -13.46744 -13.18609 -12.79761 -12.65976 -12.44078 -12.29175 -12.00397
-11.95363 -11.39186 -11.29882 -11.04305 -10.89123 -10.76901 -10.72066 -10.61747
-10.46947 -10.30994 -10.05307 -9.86837 -9.81279 -9.61653 -8.55162 -8.49982
-6.72780 -5.71776 -3.18731 2.66290 3.09494 3.39275 3.44613 3.45713
4.30080 4.38342 4.44668 4.50383 4.59027 4.80160 4.87306 5.11689
5.14846 5.33501 5.39983 5.41935 5.48116 5.53719 5.58326 5.62649
5.73307 5.75241 5.87447 5.89599 5.99393 6.09522 6.16915 6.24072
6.28822 6.40829 6.54988 6.73185 6.75529 6.90577 7.35310 7.64326
7.72775 7.81281 8.24486 8.40913 9.24701 9.88259 10.37093 11.32677
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.038535 B = 0.003746 C = 0.003632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 726.446442 B = 7473.445097 C = 7707.037575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.162 3.838
2 N -0.599 5.599
3 C -0.257 4.257
4 H 0.067 0.933
5 C 0.003 3.997
6 N -0.907 5.907
7 Si 0.903 3.097
8 H -0.285 1.285
9 H -0.291 1.291
10 H -0.283 1.283
11 C 0.163 3.837
12 C -0.118 4.118
13 H 0.083 0.917
14 C -0.118 4.118
15 C 0.101 3.899
16 N -0.614 5.614
17 C 0.534 3.466
18 O -0.548 6.548
19 C -0.135 4.135
20 C -0.122 4.122
21 C -0.141 4.141
22 C -0.118 4.118
23 C 0.108 3.892
24 H 0.029 0.971
25 H 0.037 0.963
26 H 0.001 0.999
27 H 0.252 0.748
28 H 0.050 0.950
29 H 0.038 0.962
30 H 0.072 0.928
31 H 0.083 0.917
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.110 0.890
35 H 0.084 0.916
36 H 0.074 0.926
37 H 0.082 0.918
38 H 0.071 0.929
39 H 0.070 0.930
40 H 0.094 0.906
41 H 0.073 0.927
42 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.673 -15.475 -12.174 19.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 N -0.321 5.321
3 C -0.386 4.386
4 H 0.085 0.915
5 C -0.196 4.196
6 N -0.552 5.552
7 Si 0.733 3.267
8 H -0.211 1.211
9 H -0.217 1.217
10 H -0.209 1.209
11 C 0.034 3.966
12 C -0.140 4.140
13 H 0.101 0.899
14 C -0.156 4.156
15 C -0.022 4.022
16 N -0.347 5.347
17 C 0.323 3.677
18 O -0.426 6.426
19 C -0.156 4.156
20 C -0.160 4.160
21 C -0.179 4.179
22 C -0.156 4.156
23 C -0.015 4.015
24 H 0.047 0.953
25 H 0.056 0.944
26 H 0.019 0.981
27 H 0.063 0.937
28 H 0.068 0.932
29 H 0.057 0.943
30 H 0.091 0.909
31 H 0.101 0.899
32 H 0.082 0.918
33 H 0.082 0.918
34 H 0.128 0.872
35 H 0.102 0.898
36 H 0.093 0.907
37 H 0.101 0.899
38 H 0.090 0.910
39 H 0.089 0.911
40 H 0.113 0.887
41 H 0.092 0.908
42 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 1.169 -15.523 -11.882 19.583
hybrid contribution 0.208 1.160 -0.206 1.196
sum 1.377 -14.363 -12.088 18.823
Atomic orbital electron populations
1.20814 0.82707 0.95377 0.99389 1.43833 1.01756 1.00514 1.86025
1.19140 0.98420 0.85680 1.35398 0.91531 1.25005 0.98003 0.98486
0.98059 1.70063 1.20191 1.27305 1.37647 0.86362 0.78467 0.83929
0.77937 1.21136 1.21674 1.20921 1.20616 0.96351 0.88601 0.90995
1.23214 0.93910 0.95085 1.01753 0.89881 1.22637 0.98176 0.97838
0.96933 1.22116 0.83163 0.97985 0.98929 1.48610 1.17554 1.45265
1.23294 1.20161 0.83962 0.77928 0.85681 1.90672 1.21212 1.60627
1.70068 1.22758 1.00093 0.97570 0.95170 1.22796 0.98536 0.95166
0.99484 1.22827 0.97219 0.99696 0.98149 1.22809 0.96253 0.96177
1.00389 1.22347 1.00405 0.94020 0.84686 0.95255 0.94390 0.98064
0.93739 0.93173 0.94327 0.90933 0.89882 0.91826 0.91833 0.87195
0.89759 0.90727 0.89927 0.91040 0.91121 0.88738 0.90838 0.91701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.82 8.75 59.85 0.52 4.34 16
2 N -0.60 -14.52 2.89 -181.11 -0.52 -15.04 16
3 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16
4 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16
5 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16
6 N -0.91 -26.28 10.77 55.49 0.60 -25.68 16
7 Si 0.90 21.77 29.58 -169.99 -5.03 16.75 16
8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
11 C 0.16 3.19 5.15 -4.04 -0.02 3.17 16
12 C -0.12 -1.94 3.26 -88.47 -0.29 -2.23 16
13 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16
14 C -0.12 -1.66 5.09 -24.90 -0.13 -1.79 16
15 C 0.10 1.20 6.45 -3.07 -0.02 1.18 16
16 N -0.61 -8.68 3.33 -170.53 -0.57 -9.25 16
17 C 0.53 7.77 7.37 -10.99 -0.08 7.69 16
18 O -0.55 -9.94 16.15 5.56 0.09 -9.85 16
19 C -0.13 -1.41 3.36 -90.96 -0.31 -1.72 16
20 C -0.12 -1.05 7.63 -25.92 -0.20 -1.25 16
21 C -0.14 -1.07 8.08 -25.92 -0.21 -1.28 16
22 C -0.12 -1.15 7.41 -25.92 -0.19 -1.34 16
23 C 0.11 1.66 6.38 -2.53 -0.02 1.64 16
24 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16
25 H 0.04 0.96 7.38 -51.93 -0.38 0.58 16
26 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16
27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16
29 H 0.04 0.71 7.90 -51.93 -0.41 0.30 16
30 H 0.07 1.00 7.54 -51.92 -0.39 0.61 16
31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
34 H 0.11 1.00 8.09 -51.93 -0.42 0.58 16
35 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.09 1.08 7.43 -51.93 -0.39 0.69 16
41 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16
42 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16
LS Contribution 333.43 15.07 5.02 5.02
Total: -1.00 -31.10 333.43 -8.89 -39.99
By element:
Atomic # 1 Polarization: 4.07 SS G_CDS: -7.31 Total: -3.24 kcal
Atomic # 6 Polarization: 2.47 SS G_CDS: -1.17 Total: 1.30 kcal
Atomic # 7 Polarization: -49.48 SS G_CDS: -0.49 Total: -49.97 kcal
Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -31.10 -8.89 -39.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753347022.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal
(2) G-P(sol) polarization free energy of solvation -31.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds