Wall clock time and date at job start Mon Mar 30 2020 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47191 * 2 1 4 4 C 1.46499 * 119.99901 * 90.00506 * 3 2 1 5 5 C 1.53000 * 109.47475 * 90.00075 * 4 3 2 6 6 N 1.46499 * 109.47100 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99547 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.34775 * 119.99917 * 270.00092 * 3 2 1 16 16 O 1.21286 * 119.99862 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00490 * 0.02562 * 15 3 2 18 18 H 1.09004 * 115.52304 * 325.50050 * 17 15 3 19 19 C 1.52993 * 117.46082 * 110.95287 * 17 15 3 20 20 H 1.08998 * 119.30040 * 356.29999 * 19 17 15 21 21 C 1.56189 * 117.01531 * 200.67737 * 19 17 15 22 22 C 1.54889 * 104.25881 * 272.19343 * 21 19 17 23 23 C 1.54893 * 102.74344 * 38.32624 * 22 21 19 24 24 C 1.52998 * 117.46496 * 179.97438 * 17 15 3 25 25 H 1.09000 * 119.29654 * 3.71060 * 24 17 15 26 26 H 1.08994 * 109.46877 * 59.99605 * 1 2 3 27 27 H 1.09006 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46673 * 299.99806 * 1 2 3 29 29 H 1.09001 * 109.46705 * 239.99641 * 2 1 3 30 30 H 1.09006 * 109.47228 * 120.00699 * 2 1 3 31 31 H 1.08996 * 109.47465 * 329.99508 * 4 3 2 32 32 H 1.08999 * 109.47120 * 209.99701 * 4 3 2 33 33 H 1.08994 * 109.47445 * 59.99790 * 5 4 3 34 34 H 1.08999 * 109.46641 * 299.99919 * 5 4 3 35 35 H 0.96998 * 120.00185 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 37 37 H 1.09004 * 110.12912 * 153.66268 * 21 19 17 38 38 H 1.08993 * 110.89456 * 31.11333 * 21 19 17 39 39 H 1.08990 * 110.76099 * 280.01167 * 22 21 19 40 40 H 1.09000 * 110.91160 * 156.70650 * 22 21 19 41 41 H 1.09004 * 110.48451 * 203.37526 * 23 22 21 42 42 H 1.08997 * 110.60271 * 80.78811 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2687 5 6 3.7076 1.8313 1.7103 6 7 3.9516 2.5214 2.9794 7 6 5.1837 2.4483 3.5726 8 1 5.9754 1.8816 3.1052 9 6 5.4151 3.1026 4.7748 10 7 4.4504 3.7936 5.3442 11 14 7.0955 3.0023 5.5843 12 1 7.1355 1.8330 6.4989 13 1 7.3472 4.2446 6.3580 14 1 8.1399 2.8496 4.5398 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1601 -1.1672 17 6 1.9912 1.3063 -2.4723 18 1 2.2038 0.2372 -2.4740 19 6 0.8185 1.7933 -3.3258 20 1 0.1731 2.5843 -2.9438 21 6 0.2501 0.7965 -4.3853 22 6 1.1130 1.0475 -5.6468 23 6 2.5250 1.2802 -5.0541 24 6 2.2650 2.0824 -3.7622 25 1 2.6852 3.0863 -3.7016 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 1.5819 1.6877 2.0284 32 1 2.0957 3.1409 1.1384 33 1 4.3884 2.2154 0.9508 34 1 3.8746 0.7621 1.8406 35 1 3.2405 3.0300 3.3994 36 1 3.5777 3.8453 4.9240 37 1 -0.7969 1.0217 -4.5885 38 1 0.3591 -0.2340 -4.0473 39 1 0.7678 1.9324 -6.1813 40 1 1.1078 0.1760 -6.3015 41 1 3.1383 1.8583 -5.7453 42 1 3.0054 0.3295 -4.8229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754040304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:13 Heat of formation + Delta-G solvation = -3.670524 kcal Electronic energy + Delta-G solvation = -20391.016098 eV Core-core repulsion = 17371.871915 eV Total energy + Delta-G solvation = -3019.144183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58413 -38.63757 -36.18111 -34.81807 -32.27051 -31.56129 -30.21288 -28.43915 -27.65588 -24.55645 -23.56926 -22.87004 -21.62838 -20.77986 -19.91951 -18.83781 -17.45903 -17.26996 -16.24613 -15.57173 -15.27089 -14.89036 -14.16048 -13.95205 -13.79403 -13.68649 -13.59121 -13.38341 -13.09421 -12.84811 -12.60361 -12.04414 -11.64735 -11.60170 -11.44838 -11.39957 -11.21416 -11.15454 -10.98795 -10.60956 -10.53988 -10.29449 -10.00325 -9.98663 -9.61394 -9.20409 -8.84522 -8.52558 -6.97818 -6.07302 -3.06861 2.50745 2.97801 3.54161 3.55994 3.60074 3.74118 4.12276 4.45170 4.47175 4.68623 4.72748 4.83925 4.88705 4.96523 5.07470 5.12936 5.15421 5.28221 5.32727 5.42514 5.48613 5.54021 5.59812 5.66959 5.68105 5.70603 5.76674 5.78630 5.84532 5.91128 6.00174 6.04986 6.07785 6.14678 6.53260 6.70112 6.88138 7.50777 7.84617 8.30796 8.79019 9.25943 10.12078 10.26631 11.41560 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.003617 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.056019 B = 7738.985115 C = 8164.451901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.108 3.892 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.330 4.330 8 H 0.064 0.936 9 C -0.046 4.046 10 N -0.945 5.945 11 Si 1.085 2.915 12 H -0.295 1.295 13 H -0.287 1.287 14 H -0.295 1.295 15 C 0.541 3.459 16 O -0.533 6.533 17 C -0.160 4.160 18 H 0.120 0.880 19 C -0.138 4.138 20 H 0.116 0.884 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.133 4.133 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -10.422 -20.995 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.335 5.335 4 C -0.015 4.015 5 C 0.020 3.980 6 N -0.388 5.388 7 C -0.461 4.461 8 H 0.082 0.918 9 C -0.243 4.243 10 N -0.590 5.590 11 Si 0.915 3.085 12 H -0.223 1.223 13 H -0.213 1.213 14 H -0.221 1.221 15 C 0.328 3.672 16 O -0.410 6.410 17 C -0.181 4.181 18 H 0.138 0.862 19 C -0.156 4.156 20 H 0.134 0.866 21 C -0.131 4.131 22 C -0.161 4.161 23 C -0.134 4.134 24 C -0.152 4.152 25 H 0.139 0.861 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.603 -9.446 -19.785 23.935 hybrid contribution -1.084 -0.488 -1.038 1.578 sum -10.686 -9.935 -20.823 25.426 Atomic orbital electron populations 1.22198 0.95819 1.02119 1.02669 1.21594 0.94457 0.82531 1.03317 1.47828 1.65438 1.14316 1.05953 1.21686 0.98041 0.98309 0.83439 1.20841 0.92746 0.95448 0.88945 1.42229 1.12672 1.61487 1.22418 1.20052 0.89626 1.30513 1.05878 0.91758 1.25813 1.05867 0.97498 0.95164 1.70843 1.03475 1.43334 1.41398 0.83173 0.73750 0.76179 0.75357 1.22301 1.21320 1.22143 1.19593 0.77194 0.86101 0.84294 1.90726 1.45222 1.17905 1.87134 1.22408 1.05227 1.00133 0.90375 0.86214 1.23645 0.90968 1.01558 0.99462 0.86645 1.22317 0.99298 0.98160 0.93358 1.22673 0.94643 1.01652 0.97114 1.21999 0.97116 0.99664 0.94609 1.23246 0.99110 1.00904 0.91938 0.86109 0.92254 0.91601 0.92224 0.90451 0.89993 0.90644 0.89925 0.95855 0.96363 0.80029 0.93389 0.91059 0.91118 0.91160 0.91188 0.90860 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.12 5.95 -4.05 -0.02 1.10 16 3 N -0.60 -8.98 2.47 -173.69 -0.43 -9.41 16 4 C 0.11 1.95 5.52 -4.04 -0.02 1.92 16 5 C 0.15 3.32 6.58 -4.04 -0.03 3.29 16 6 N -0.74 -20.03 5.60 -59.91 -0.34 -20.36 16 7 C -0.33 -9.85 9.99 -15.06 -0.15 -10.00 16 8 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 10 N -0.94 -30.19 13.70 55.49 0.76 -29.43 16 11 Si 1.08 26.89 29.92 -169.99 -5.09 21.80 16 12 H -0.30 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.54 8.60 7.46 -10.99 -0.08 8.52 16 16 O -0.53 -10.88 15.90 5.55 0.09 -10.79 16 17 C -0.16 -1.85 4.80 -91.78 -0.44 -2.29 16 18 H 0.12 1.15 6.44 -51.93 -0.33 0.82 16 19 C -0.14 -1.35 6.81 -88.48 -0.60 -1.95 16 20 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.09 -0.66 6.65 -24.02 -0.16 -0.82 16 22 C -0.12 -0.82 6.91 -24.74 -0.17 -0.99 16 23 C -0.10 -0.78 6.63 -25.06 -0.17 -0.95 16 24 C -0.13 -1.46 6.34 -89.52 -0.57 -2.03 16 25 H 0.12 1.57 7.78 -51.93 -0.40 1.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.68 6.00 -51.93 -0.31 0.37 16 30 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 32 H 0.08 1.65 7.42 -51.93 -0.39 1.27 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.37 9.95 6.50 -40.82 -0.27 9.68 16 36 H 0.25 8.01 6.77 -40.82 -0.28 7.74 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -35.34 340.89 -9.09 -44.43 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.10 Total: 5.48 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.13 Total: -6.85 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.00 Total: -59.21 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.09 Total: 21.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.34 -9.09 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754040304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.761 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds