Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47191 * 2 1 4 4 C 1.46499 * 119.99901 * 90.00506 * 3 2 1 5 5 C 1.53000 * 109.47475 * 90.00075 * 4 3 2 6 6 N 1.46499 * 109.47100 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99547 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.34775 * 119.99917 * 270.00092 * 3 2 1 16 16 O 1.21286 * 119.99862 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00490 * 0.02562 * 15 3 2 18 18 H 1.09004 * 115.52304 * 325.50050 * 17 15 3 19 19 C 1.52993 * 117.46082 * 110.95287 * 17 15 3 20 20 H 1.08998 * 119.30040 * 356.29999 * 19 17 15 21 21 C 1.56189 * 117.01531 * 200.67737 * 19 17 15 22 22 C 1.54889 * 104.25881 * 272.19343 * 21 19 17 23 23 C 1.54893 * 102.74344 * 38.32624 * 22 21 19 24 24 C 1.52998 * 117.46496 * 179.97438 * 17 15 3 25 25 H 1.09000 * 119.29654 * 3.71060 * 24 17 15 26 26 H 1.08994 * 109.46877 * 59.99605 * 1 2 3 27 27 H 1.09006 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46673 * 299.99806 * 1 2 3 29 29 H 1.09001 * 109.46705 * 239.99641 * 2 1 3 30 30 H 1.09006 * 109.47228 * 120.00699 * 2 1 3 31 31 H 1.08996 * 109.47465 * 329.99508 * 4 3 2 32 32 H 1.08999 * 109.47120 * 209.99701 * 4 3 2 33 33 H 1.08994 * 109.47445 * 59.99790 * 5 4 3 34 34 H 1.08999 * 109.46641 * 299.99919 * 5 4 3 35 35 H 0.96998 * 120.00185 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 37 37 H 1.09004 * 110.12912 * 153.66268 * 21 19 17 38 38 H 1.08993 * 110.89456 * 31.11333 * 21 19 17 39 39 H 1.08990 * 110.76099 * 280.01167 * 22 21 19 40 40 H 1.09000 * 110.91160 * 156.70650 * 22 21 19 41 41 H 1.09004 * 110.48451 * 203.37526 * 23 22 21 42 42 H 1.08997 * 110.60271 * 80.78811 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2687 5 6 3.7076 1.8313 1.7103 6 7 3.9516 2.5214 2.9794 7 6 5.1837 2.4483 3.5726 8 1 5.9754 1.8816 3.1052 9 6 5.4151 3.1026 4.7748 10 7 4.4504 3.7936 5.3442 11 14 7.0955 3.0023 5.5843 12 1 7.1355 1.8330 6.4989 13 1 7.3472 4.2446 6.3580 14 1 8.1399 2.8496 4.5398 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1601 -1.1672 17 6 1.9912 1.3063 -2.4723 18 1 2.2038 0.2372 -2.4740 19 6 0.8185 1.7933 -3.3258 20 1 0.1731 2.5843 -2.9438 21 6 0.2501 0.7965 -4.3853 22 6 1.1130 1.0475 -5.6468 23 6 2.5250 1.2802 -5.0541 24 6 2.2650 2.0824 -3.7622 25 1 2.6852 3.0863 -3.7016 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 1.5819 1.6877 2.0284 32 1 2.0957 3.1409 1.1384 33 1 4.3884 2.2154 0.9508 34 1 3.8746 0.7621 1.8406 35 1 3.2405 3.0300 3.3994 36 1 3.5777 3.8453 4.9240 37 1 -0.7969 1.0217 -4.5885 38 1 0.3591 -0.2340 -4.0473 39 1 0.7678 1.9324 -6.1813 40 1 1.1078 0.1760 -6.3015 41 1 3.1383 1.8583 -5.7453 42 1 3.0054 0.3295 -4.8229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754040304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -25.895596 kcal Electronic energy + Delta-G solvation = -20391.979850 eV Core-core repulsion = 17371.871915 eV Total energy + Delta-G solvation = -3020.107935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64866 -39.63001 -37.66690 -36.67146 -33.81735 -32.63698 -31.53259 -29.30420 -29.05843 -26.15360 -24.90703 -24.30353 -23.06861 -21.51426 -20.69778 -20.03337 -19.43216 -18.49219 -17.51736 -17.08110 -16.42461 -16.06364 -15.72055 -15.36524 -15.36278 -15.03521 -14.84014 -14.46257 -14.04636 -13.88430 -13.67298 -13.14448 -12.92183 -12.77985 -12.67521 -12.45871 -12.35244 -12.29352 -12.05547 -11.98168 -11.90476 -11.68345 -11.42960 -11.16069 -11.02262 -10.92686 -10.67080 -9.84574 -9.24021 -8.49110 -5.44316 1.33336 1.54928 1.66929 1.78464 1.82172 2.65373 2.68559 3.25082 3.32128 3.67016 3.71766 3.77244 3.81775 4.00628 4.03083 4.09549 4.14358 4.22927 4.35450 4.38276 4.44528 4.48754 4.55323 4.68669 4.78302 4.82592 4.87914 4.94812 4.95606 4.99612 5.15538 5.21698 5.22281 5.26122 5.33642 5.42393 5.50122 5.51410 6.31350 6.40777 6.97993 7.06650 7.87603 7.98646 9.02832 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.003617 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.056019 B = 7738.985115 C = 8164.451901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.123 3.877 5 C 0.156 3.844 6 N -0.755 5.755 7 C -0.343 4.343 8 H 0.064 0.936 9 C -0.101 4.101 10 N -0.970 5.970 11 Si 1.135 2.865 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.531 3.469 16 O -0.592 6.592 17 C -0.161 4.161 18 H 0.149 0.851 19 C -0.124 4.124 20 H 0.101 0.899 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.092 4.092 24 C -0.150 4.150 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.056 0.944 33 H -0.004 1.004 34 H 0.030 0.970 35 H 0.363 0.637 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 -13.195 -22.452 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.331 5.331 4 C -0.001 4.001 5 C 0.028 3.972 6 N -0.400 5.400 7 C -0.474 4.474 8 H 0.082 0.918 9 C -0.292 4.292 10 N -0.618 5.618 11 Si 0.958 3.042 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.201 1.201 15 C 0.321 3.679 16 O -0.473 6.473 17 C -0.182 4.182 18 H 0.166 0.834 19 C -0.143 4.143 20 H 0.119 0.881 21 C -0.123 4.123 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.168 4.168 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.014 0.986 34 H 0.048 0.952 35 H 0.195 0.805 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.207 -12.284 -21.282 26.609 hybrid contribution -0.929 0.392 -0.627 1.187 sum -11.136 -11.893 -21.909 27.303 Atomic orbital electron populations 1.22145 0.94115 1.03761 1.02057 1.21954 0.95829 0.79946 1.04734 1.47960 1.64873 1.15849 1.04446 1.21295 0.95673 0.97491 0.85636 1.20867 0.94864 0.95097 0.86359 1.42416 1.11945 1.61915 1.23730 1.20396 0.90652 1.30198 1.06176 0.91825 1.27401 1.08825 0.96868 0.96090 1.70957 1.03703 1.45020 1.42079 0.82558 0.69915 0.76564 0.75166 1.20304 1.21571 1.20139 1.20475 0.75897 0.85650 0.85896 1.90694 1.47879 1.20639 1.88044 1.22383 1.07017 1.00836 0.87924 0.83398 1.23764 0.90142 1.01633 0.98726 0.88117 1.22370 0.99841 0.98030 0.92075 1.22681 0.93140 1.02621 0.97130 1.22029 0.98468 0.99518 0.92880 1.23317 1.00386 1.00005 0.93134 0.89406 0.92113 0.88743 0.93636 0.87743 0.89868 0.88732 0.92572 0.98629 0.95179 0.80518 0.94511 0.89771 0.89344 0.91266 0.88975 0.90727 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 71.98 0.74 -1.77 16 2 C 0.10 1.86 5.95 86.38 0.51 2.37 16 3 N -0.60 -17.79 2.47 -821.83 -2.03 -19.82 16 4 C 0.12 4.56 5.52 86.38 0.48 5.04 16 5 C 0.16 7.13 6.58 86.38 0.57 7.70 16 6 N -0.75 -41.82 5.60 -343.46 -1.92 -43.74 16 7 C -0.34 -20.76 9.99 84.03 0.84 -19.92 16 8 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 9 C -0.10 -6.12 5.50 84.86 0.47 -5.65 16 10 N -0.97 -62.93 13.70 21.65 0.30 -62.64 16 11 Si 1.13 53.84 29.92 68.60 2.05 55.89 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 15 C 0.53 17.26 7.46 87.66 0.65 17.92 16 16 O -0.59 -25.73 15.90 -3.05 -0.05 -25.78 16 17 C -0.16 -3.53 4.80 -11.54 -0.06 -3.59 16 18 H 0.15 2.35 6.44 -2.39 -0.02 2.34 16 19 C -0.12 -2.26 6.81 -9.41 -0.06 -2.32 16 20 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 21 C -0.09 -0.90 6.65 32.35 0.22 -0.69 16 22 C -0.12 -1.18 6.91 31.89 0.22 -0.96 16 23 C -0.09 -1.29 6.63 31.68 0.21 -1.08 16 24 C -0.15 -3.24 6.34 -10.08 -0.06 -3.31 16 25 H 0.09 2.47 7.78 -2.39 -0.02 2.46 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 1.47 6.00 -2.39 -0.01 1.45 16 30 H 0.08 1.62 8.07 -2.38 -0.02 1.60 16 31 H 0.09 3.13 8.07 -2.39 -0.02 3.11 16 32 H 0.06 2.38 7.42 -2.39 -0.02 2.37 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.36 20.39 6.50 -92.71 -0.60 19.79 16 36 H 0.24 15.82 6.77 -92.71 -0.63 15.20 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.49 340.89 3.59 -75.90 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.53 Total: 26.45 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.72 Total: -6.26 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -3.66 Total: -126.20 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 2.05 Total: 55.89 kcal Total: -79.49 3.59 -75.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754040304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.000 kcal (2) G-P(sol) polarization free energy of solvation -79.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds