Wall clock time and date at job start Mon Mar 30 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46820 * 2 1 4 4 C 1.46494 * 120.00456 * 275.23051 * 3 2 1 5 5 C 1.52997 * 109.47501 * 270.00458 * 4 3 2 6 6 N 1.46494 * 109.47501 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00283 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00360 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00032 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00095 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47061 * 60.00422 * 11 9 7 13 13 H 1.48504 * 109.46892 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47215 * 300.00219 * 11 9 7 15 15 C 1.34777 * 119.99381 * 95.23238 * 3 2 1 16 16 O 1.21283 * 119.99954 * 185.10515 * 15 3 2 17 17 C 1.50699 * 120.00442 * 4.83445 * 15 3 2 18 18 H 1.09001 * 110.67011 * 34.08848 * 17 15 3 19 19 C 1.54889 * 110.75626 * 157.31719 * 17 15 3 20 20 C 1.54270 * 104.19234 * 156.25860 * 19 17 15 21 21 H 1.09003 * 117.41538 * 116.37380 * 20 19 17 22 22 C 1.52999 * 118.19907 * 272.21288 * 20 19 17 23 23 C 1.52994 * 60.37788 * 93.61709 * 22 20 19 24 24 H 1.09005 * 119.29543 * 111.31317 * 23 22 20 25 25 C 1.54270 * 118.19932 * 266.38111 * 23 22 20 26 26 H 1.08997 * 109.46989 * 305.64559 * 1 2 3 27 27 H 1.09000 * 109.47399 * 65.64617 * 1 2 3 28 28 H 1.09000 * 109.46774 * 185.64481 * 1 2 3 29 29 H 1.09000 * 109.46751 * 240.00921 * 2 1 3 30 30 H 1.08991 * 109.47076 * 120.00083 * 2 1 3 31 31 H 1.09005 * 109.46940 * 30.00427 * 4 3 2 32 32 H 1.08998 * 109.47202 * 150.00020 * 4 3 2 33 33 H 1.09005 * 109.46998 * 299.99933 * 5 4 3 34 34 H 1.09005 * 109.46882 * 59.99625 * 5 4 3 35 35 H 0.97000 * 120.00003 * 359.97438 * 6 5 4 36 36 H 0.96995 * 120.00677 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.49155 * 274.93383 * 19 17 15 38 38 H 1.09000 * 110.48434 * 37.45388 * 19 17 15 39 39 H 1.09001 * 117.46343 * 201.21937 * 22 20 19 40 40 H 1.09007 * 117.46230 * 346.01414 * 22 20 19 41 41 H 1.09003 * 110.48643 * 329.11523 * 25 23 22 42 42 H 1.08997 * 110.48771 * 206.46785 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1534 2.1105 -1.2633 5 6 3.5547 1.8856 -1.8348 6 7 3.6897 2.6143 -3.0984 7 6 4.8663 2.5618 -3.7969 8 1 5.6951 1.9835 -3.4159 9 6 4.9940 3.2519 -4.9945 10 7 3.9842 3.9571 -5.4586 11 14 6.5994 3.1809 -5.9468 12 1 6.8970 1.7724 -6.3110 13 1 6.4789 3.9970 -7.1816 14 1 7.6986 3.7173 -5.1048 15 6 2.3432 1.9810 1.1624 16 8 2.6587 3.1521 1.1731 17 6 2.3087 1.1983 2.4497 18 1 2.6002 0.1621 2.2779 19 6 3.2199 1.8551 3.5161 20 6 2.6401 1.3688 4.8605 21 1 3.2777 0.7430 5.4850 22 6 1.5166 2.1861 5.5012 23 6 1.1692 1.0014 4.5976 24 1 0.7206 0.1098 5.0358 25 6 0.9064 1.2772 3.1027 26 1 -0.3633 0.5989 0.8351 27 1 -0.3634 0.4238 -0.9362 28 1 -0.3633 -1.0227 0.1011 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.4093 1.7488 -1.9730 32 1 1.9996 3.1750 -1.0866 33 1 4.2989 2.2473 -1.1251 34 1 3.7085 0.8210 -2.0115 35 1 2.9455 3.1340 -3.4404 36 1 4.0734 4.4397 -6.2952 37 1 4.2493 1.5160 3.3997 38 1 3.1669 2.9416 3.4463 39 1 1.3552 2.0655 6.5724 40 1 1.3366 3.1871 5.1091 41 1 0.4781 2.2704 2.9675 42 1 0.2475 0.5164 2.6844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754063719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:10 Heat of formation + Delta-G solvation = -1.604891 kcal Electronic energy + Delta-G solvation = -20543.596878 eV Core-core repulsion = 17524.542267 eV Total energy + Delta-G solvation = -3019.054611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59009 -38.69035 -36.14514 -34.58775 -32.33110 -31.39399 -30.28819 -28.47499 -27.69581 -24.49638 -23.57941 -22.86190 -21.53098 -20.73404 -19.92269 -18.51065 -17.37955 -17.05388 -16.55678 -15.89368 -15.03717 -14.47941 -14.32013 -14.00804 -13.60445 -13.44786 -13.36889 -13.18368 -13.04109 -12.85177 -12.60655 -12.05475 -11.65588 -11.57871 -11.41073 -11.34221 -11.16929 -10.96318 -10.89540 -10.85486 -10.62177 -10.27650 -10.12156 -9.91136 -9.73220 -9.45115 -8.84186 -8.47030 -6.90511 -5.73337 -3.02587 2.71323 3.09561 3.44146 3.46905 3.50843 3.52400 4.18192 4.45875 4.56618 4.63521 4.71933 4.83512 4.92121 5.00814 5.12918 5.17082 5.24311 5.29532 5.36509 5.52750 5.55309 5.57245 5.62763 5.69171 5.70584 5.71462 5.86497 5.90978 5.96850 6.01374 6.07633 6.13811 6.19079 6.22128 6.61605 6.78358 6.95237 7.57567 7.72245 8.35888 8.45411 9.55932 10.12470 10.47647 11.49588 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.003757 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.421742 B = 7450.514732 C = 7918.563019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.519 3.481 16 O -0.533 6.533 17 C -0.113 4.113 18 H 0.099 0.901 19 C -0.083 4.083 20 C -0.163 4.163 21 H 0.111 0.889 22 C -0.153 4.153 23 C -0.168 4.168 24 H 0.111 0.889 25 C -0.081 4.081 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 -10.371 20.320 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.339 5.339 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.306 3.694 16 O -0.409 6.409 17 C -0.134 4.134 18 H 0.117 0.883 19 C -0.120 4.120 20 C -0.181 4.181 21 H 0.129 0.871 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.129 0.871 25 C -0.119 4.119 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.524 -9.780 20.237 24.038 hybrid contribution 0.642 -0.053 -0.758 0.995 sum -7.881 -9.833 19.479 23.200 Atomic orbital electron populations 1.22276 0.95906 1.02096 1.02841 1.21633 0.94420 0.82797 1.03451 1.47946 1.65014 1.14209 1.06748 1.21679 0.98630 0.97880 0.83393 1.20898 0.93469 0.95212 0.88911 1.42203 1.15397 1.58632 1.21262 1.19166 0.91434 1.24980 1.01418 0.91270 1.24746 0.97822 1.00145 0.98250 1.69650 1.30485 1.35850 1.22277 0.86234 0.83143 0.77319 0.79303 1.21263 1.21638 1.21227 1.20432 0.76633 0.87504 0.84816 1.90712 1.47422 1.16321 1.86467 1.22513 0.97533 1.00419 0.92969 0.88318 1.21871 0.98152 1.01890 0.90131 1.23232 0.91045 1.04489 0.99363 0.87135 1.23079 1.01358 0.96253 0.98291 1.23201 0.99641 1.00338 0.95382 0.87079 1.21913 0.94906 1.02650 0.92434 0.92257 0.92030 0.91581 0.90049 0.90181 0.90618 0.89719 0.96106 0.96491 0.78263 0.93434 0.90860 0.89543 0.88463 0.88774 0.90826 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.14 37.16 0.38 -1.14 16 2 C 0.10 1.04 6.09 -4.04 -0.02 1.01 16 3 N -0.61 -8.74 2.47 -173.69 -0.43 -9.17 16 4 C 0.11 1.90 5.58 -4.05 -0.02 1.87 16 5 C 0.14 3.12 6.58 -4.05 -0.03 3.10 16 6 N -0.73 -19.50 5.60 -59.91 -0.34 -19.84 16 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 11 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.52 7.92 6.86 -10.99 -0.08 7.84 16 16 O -0.53 -10.50 15.35 5.55 0.09 -10.42 16 17 C -0.11 -1.25 2.46 -89.78 -0.22 -1.47 16 18 H 0.10 0.92 6.22 -51.93 -0.32 0.59 16 19 C -0.08 -0.93 5.92 -25.07 -0.15 -1.08 16 20 C -0.16 -1.45 6.94 -89.50 -0.62 -2.07 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 22 C -0.15 -1.27 10.07 -26.73 -0.27 -1.54 16 23 C -0.17 -1.38 6.94 -89.51 -0.62 -2.00 16 24 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.08 -0.76 5.77 -25.07 -0.14 -0.90 16 26 H 0.06 0.52 6.29 -51.93 -0.33 0.19 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.08 0.66 5.65 -51.93 -0.29 0.37 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 32 H 0.08 1.69 7.36 -51.93 -0.38 1.30 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.16 7.23 -51.93 -0.38 0.79 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 42 H 0.08 0.60 6.53 -51.93 -0.34 0.26 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -33.70 336.78 -8.91 -42.61 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.96 Total: 6.03 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.04 Total: -4.01 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.04 Total: -57.24 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.70 -8.91 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754063719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds