Wall clock time and date at job start Mon Mar 30 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46820 * 2 1 4 4 C 1.46494 * 120.00456 * 275.23051 * 3 2 1 5 5 C 1.52997 * 109.47501 * 270.00458 * 4 3 2 6 6 N 1.46494 * 109.47501 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00283 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00360 * 179.97438 * 7 6 5 10 10 N 1.31620 * 120.00032 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00095 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47061 * 60.00422 * 11 9 7 13 13 H 1.48504 * 109.46892 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47215 * 300.00219 * 11 9 7 15 15 C 1.34777 * 119.99381 * 95.23238 * 3 2 1 16 16 O 1.21283 * 119.99954 * 185.10515 * 15 3 2 17 17 C 1.50699 * 120.00442 * 4.83445 * 15 3 2 18 18 H 1.09001 * 110.67011 * 34.08848 * 17 15 3 19 19 C 1.54889 * 110.75626 * 157.31719 * 17 15 3 20 20 C 1.54270 * 104.19234 * 156.25860 * 19 17 15 21 21 H 1.09003 * 117.41538 * 116.37380 * 20 19 17 22 22 C 1.52999 * 118.19907 * 272.21288 * 20 19 17 23 23 C 1.52994 * 60.37788 * 93.61709 * 22 20 19 24 24 H 1.09005 * 119.29543 * 111.31317 * 23 22 20 25 25 C 1.54270 * 118.19932 * 266.38111 * 23 22 20 26 26 H 1.08997 * 109.46989 * 305.64559 * 1 2 3 27 27 H 1.09000 * 109.47399 * 65.64617 * 1 2 3 28 28 H 1.09000 * 109.46774 * 185.64481 * 1 2 3 29 29 H 1.09000 * 109.46751 * 240.00921 * 2 1 3 30 30 H 1.08991 * 109.47076 * 120.00083 * 2 1 3 31 31 H 1.09005 * 109.46940 * 30.00427 * 4 3 2 32 32 H 1.08998 * 109.47202 * 150.00020 * 4 3 2 33 33 H 1.09005 * 109.46998 * 299.99933 * 5 4 3 34 34 H 1.09005 * 109.46882 * 59.99625 * 5 4 3 35 35 H 0.97000 * 120.00003 * 359.97438 * 6 5 4 36 36 H 0.96995 * 120.00677 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.49155 * 274.93383 * 19 17 15 38 38 H 1.09000 * 110.48434 * 37.45388 * 19 17 15 39 39 H 1.09001 * 117.46343 * 201.21937 * 22 20 19 40 40 H 1.09007 * 117.46230 * 346.01414 * 22 20 19 41 41 H 1.09003 * 110.48643 * 329.11523 * 25 23 22 42 42 H 1.08997 * 110.48771 * 206.46785 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1534 2.1105 -1.2633 5 6 3.5547 1.8856 -1.8348 6 7 3.6897 2.6143 -3.0984 7 6 4.8663 2.5618 -3.7969 8 1 5.6951 1.9835 -3.4159 9 6 4.9940 3.2519 -4.9945 10 7 3.9842 3.9571 -5.4586 11 14 6.5994 3.1809 -5.9468 12 1 6.8970 1.7724 -6.3110 13 1 6.4789 3.9970 -7.1816 14 1 7.6986 3.7173 -5.1048 15 6 2.3432 1.9810 1.1624 16 8 2.6587 3.1521 1.1731 17 6 2.3087 1.1983 2.4497 18 1 2.6002 0.1621 2.2779 19 6 3.2199 1.8551 3.5161 20 6 2.6401 1.3688 4.8605 21 1 3.2777 0.7430 5.4850 22 6 1.5166 2.1861 5.5012 23 6 1.1692 1.0014 4.5976 24 1 0.7206 0.1098 5.0358 25 6 0.9064 1.2772 3.1027 26 1 -0.3633 0.5989 0.8351 27 1 -0.3634 0.4238 -0.9362 28 1 -0.3633 -1.0227 0.1011 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.4093 1.7488 -1.9730 32 1 1.9996 3.1750 -1.0866 33 1 4.2989 2.2473 -1.1251 34 1 3.7085 0.8210 -2.0115 35 1 2.9455 3.1340 -3.4404 36 1 4.0734 4.4397 -6.2952 37 1 4.2493 1.5160 3.3997 38 1 3.1669 2.9416 3.4463 39 1 1.3552 2.0655 6.5724 40 1 1.3366 3.1871 5.1091 41 1 0.4781 2.2704 2.9675 42 1 0.2475 0.5164 2.6844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754063719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:10 Heat of formation + Delta-G solvation = -22.596640 kcal Electronic energy + Delta-G solvation = -20544.507148 eV Core-core repulsion = 17524.542267 eV Total energy + Delta-G solvation = -3019.964881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62557 -39.63945 -37.53612 -36.39840 -33.82627 -32.72172 -31.54032 -29.37333 -29.20647 -26.13766 -24.68804 -24.16128 -22.96653 -21.67591 -20.62587 -19.74941 -19.13115 -18.36210 -17.42733 -17.16453 -16.58587 -16.09343 -15.58710 -15.24915 -15.13693 -14.98886 -14.63942 -14.24888 -14.06111 -13.93571 -13.65328 -13.09868 -12.93470 -12.81776 -12.74498 -12.50391 -12.40355 -12.27846 -12.19499 -12.14497 -12.10452 -11.88700 -11.68454 -10.99869 -10.95734 -10.78939 -10.50805 -9.74393 -9.10049 -7.99974 -5.31491 1.44415 1.49088 1.53731 1.55572 1.92941 2.54075 2.72479 3.31002 3.33386 3.73471 3.78637 3.83845 3.98606 4.09224 4.16290 4.18459 4.23507 4.27282 4.42417 4.45397 4.47875 4.52065 4.54229 4.66790 4.73061 4.87371 4.90002 4.96520 4.99557 5.05072 5.07915 5.10869 5.19380 5.34683 5.40367 5.42536 5.43631 5.56493 6.21081 6.41958 7.16016 7.27069 7.98266 8.24040 9.23286 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.003757 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.421742 B = 7450.514732 C = 7918.563019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.603 5.603 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.255 4.255 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.511 3.489 16 O -0.590 6.590 17 C -0.104 4.104 18 H 0.128 0.872 19 C -0.089 4.089 20 C -0.165 4.165 21 H 0.130 0.870 22 C -0.159 4.159 23 C -0.155 4.155 24 H 0.139 0.861 25 C -0.079 4.079 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.032 0.968 35 H 0.375 0.625 36 H 0.254 0.746 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -13.235 21.632 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.335 5.335 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.386 4.386 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.808 3.192 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.301 3.699 16 O -0.470 6.470 17 C -0.125 4.125 18 H 0.145 0.855 19 C -0.127 4.127 20 C -0.183 4.183 21 H 0.148 0.852 22 C -0.196 4.196 23 C -0.173 4.173 24 H 0.157 0.843 25 C -0.117 4.117 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.049 0.951 35 H 0.207 0.793 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.823 -12.707 21.584 26.555 hybrid contribution 0.722 0.851 -1.133 1.590 sum -8.101 -11.856 20.451 24.988 Atomic orbital electron populations 1.22245 0.94372 1.03862 1.02127 1.21996 0.95665 0.80217 1.04986 1.48067 1.64578 1.15692 1.05169 1.21274 0.96612 0.97006 0.85346 1.20935 0.95212 0.94953 0.86606 1.42394 1.14589 1.59076 1.22617 1.19569 0.92334 1.24861 1.01866 0.90858 1.25654 1.01468 1.00017 0.99365 1.69813 1.32611 1.36792 1.22616 0.85129 0.78792 0.77815 0.77514 1.19777 1.21684 1.20619 1.21308 0.75229 0.87166 0.86230 1.90687 1.49901 1.19019 1.87355 1.22575 0.98873 1.00773 0.90298 0.85473 1.21867 0.98664 0.99963 0.92208 1.23199 0.91633 1.05089 0.98399 0.85213 1.23158 1.01229 0.95616 0.99561 1.23289 0.98702 1.00935 0.94327 0.84325 1.21931 0.93902 1.02286 0.93595 0.92166 0.93506 0.88612 0.89931 0.87233 0.89019 0.92595 0.98442 0.95054 0.79298 0.93713 0.90856 0.92911 0.86323 0.90622 0.93122 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.14 71.98 0.73 -1.73 16 2 C 0.09 1.67 6.09 86.38 0.53 2.20 16 3 N -0.60 -17.14 2.47 -821.83 -2.03 -19.17 16 4 C 0.12 4.43 5.58 86.38 0.48 4.91 16 5 C 0.15 6.68 6.58 86.38 0.57 7.25 16 6 N -0.74 -40.68 5.60 -343.46 -1.92 -42.60 16 7 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 9 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 10 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 11 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 C 0.51 15.81 6.86 87.66 0.60 16.41 16 16 O -0.59 -24.71 15.35 -3.04 -0.05 -24.76 16 17 C -0.10 -2.16 2.46 -10.25 -0.03 -2.18 16 18 H 0.13 1.91 6.22 -2.39 -0.01 1.90 16 19 C -0.09 -1.99 5.92 31.67 0.19 -1.80 16 20 C -0.17 -2.60 6.94 -10.07 -0.07 -2.67 16 21 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 22 C -0.16 -2.38 10.07 30.59 0.31 -2.07 16 23 C -0.15 -2.06 6.94 -10.07 -0.07 -2.13 16 24 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 25 C -0.08 -1.32 5.77 31.67 0.18 -1.13 16 26 H 0.06 0.88 6.29 -2.39 -0.02 0.87 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.11 1.35 5.65 -2.39 -0.01 1.34 16 31 H 0.09 3.03 8.07 -2.38 -0.02 3.01 16 32 H 0.06 2.36 7.36 -2.39 -0.02 2.35 16 33 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 34 H 0.03 1.31 8.14 -2.38 -0.02 1.30 16 35 H 0.38 21.49 7.67 -92.71 -0.71 20.78 16 36 H 0.25 15.41 8.31 -92.71 -0.77 14.63 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.53 7.23 -2.39 -0.02 1.51 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 42 H 0.10 1.19 6.53 -2.39 -0.02 1.18 16 Total: -1.00 -75.68 336.78 3.32 -72.36 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.29 Total: 26.54 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 4.73 Total: -1.01 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -3.67 Total: -122.50 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.68 3.32 -72.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754063719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.760 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds