Wall clock time and date at job start Mon Mar 30 2020 00:45:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46502 * 109.46820 * 2 1
4 4 C 1.46494 * 120.00456 * 275.23051 * 3 2 1
5 5 C 1.52997 * 109.47501 * 270.00458 * 4 3 2
6 6 N 1.46494 * 109.47501 * 179.97438 * 5 4 3
7 7 C 1.36936 * 120.00283 * 179.97438 * 6 5 4
8 8 H 1.08002 * 119.99745 * 359.97438 * 7 6 5
9 9 C 1.38809 * 120.00360 * 179.97438 * 7 6 5
10 10 N 1.31620 * 120.00032 * 0.02562 * 9 7 6
11 11 Si 1.86799 * 120.00095 * 179.97438 * 9 7 6
12 12 H 1.48492 * 109.47061 * 60.00422 * 11 9 7
13 13 H 1.48504 * 109.46892 * 180.02562 * 11 9 7
14 14 H 1.48495 * 109.47215 * 300.00219 * 11 9 7
15 15 C 1.34777 * 119.99381 * 95.23238 * 3 2 1
16 16 O 1.21283 * 119.99954 * 185.10515 * 15 3 2
17 17 C 1.50699 * 120.00442 * 4.83445 * 15 3 2
18 18 H 1.09001 * 110.67011 * 34.08848 * 17 15 3
19 19 C 1.54889 * 110.75626 * 157.31719 * 17 15 3
20 20 C 1.54270 * 104.19234 * 156.25860 * 19 17 15
21 21 H 1.09003 * 117.41538 * 116.37380 * 20 19 17
22 22 C 1.52999 * 118.19907 * 272.21288 * 20 19 17
23 23 C 1.52994 * 60.37788 * 93.61709 * 22 20 19
24 24 H 1.09005 * 119.29543 * 111.31317 * 23 22 20
25 25 C 1.54270 * 118.19932 * 266.38111 * 23 22 20
26 26 H 1.08997 * 109.46989 * 305.64559 * 1 2 3
27 27 H 1.09000 * 109.47399 * 65.64617 * 1 2 3
28 28 H 1.09000 * 109.46774 * 185.64481 * 1 2 3
29 29 H 1.09000 * 109.46751 * 240.00921 * 2 1 3
30 30 H 1.08991 * 109.47076 * 120.00083 * 2 1 3
31 31 H 1.09005 * 109.46940 * 30.00427 * 4 3 2
32 32 H 1.08998 * 109.47202 * 150.00020 * 4 3 2
33 33 H 1.09005 * 109.46998 * 299.99933 * 5 4 3
34 34 H 1.09005 * 109.46882 * 59.99625 * 5 4 3
35 35 H 0.97000 * 120.00003 * 359.97438 * 6 5 4
36 36 H 0.96995 * 120.00677 * 179.97438 * 10 9 7
37 37 H 1.09000 * 110.49155 * 274.93383 * 19 17 15
38 38 H 1.09000 * 110.48434 * 37.45388 * 19 17 15
39 39 H 1.09001 * 117.46343 * 201.21937 * 22 20 19
40 40 H 1.09007 * 117.46230 * 346.01414 * 22 20 19
41 41 H 1.09003 * 110.48643 * 329.11523 * 25 23 22
42 42 H 1.08997 * 110.48771 * 206.46785 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1534 2.1105 -1.2633
5 6 3.5547 1.8856 -1.8348
6 7 3.6897 2.6143 -3.0984
7 6 4.8663 2.5618 -3.7969
8 1 5.6951 1.9835 -3.4159
9 6 4.9940 3.2519 -4.9945
10 7 3.9842 3.9571 -5.4586
11 14 6.5994 3.1809 -5.9468
12 1 6.8970 1.7724 -6.3110
13 1 6.4789 3.9970 -7.1816
14 1 7.6986 3.7173 -5.1048
15 6 2.3432 1.9810 1.1624
16 8 2.6587 3.1521 1.1731
17 6 2.3087 1.1983 2.4497
18 1 2.6002 0.1621 2.2779
19 6 3.2199 1.8551 3.5161
20 6 2.6401 1.3688 4.8605
21 1 3.2777 0.7430 5.4850
22 6 1.5166 2.1861 5.5012
23 6 1.1692 1.0014 4.5976
24 1 0.7206 0.1098 5.0358
25 6 0.9064 1.2772 3.1027
26 1 -0.3633 0.5989 0.8351
27 1 -0.3634 0.4238 -0.9362
28 1 -0.3633 -1.0227 0.1011
29 1 1.8933 -0.5137 -0.8901
30 1 1.8933 -0.5138 0.8899
31 1 1.4093 1.7488 -1.9730
32 1 1.9996 3.1750 -1.0866
33 1 4.2989 2.2473 -1.1251
34 1 3.7085 0.8210 -2.0115
35 1 2.9455 3.1340 -3.4404
36 1 4.0734 4.4397 -6.2952
37 1 4.2493 1.5160 3.3997
38 1 3.1669 2.9416 3.4463
39 1 1.3552 2.0655 6.5724
40 1 1.3366 3.1871 5.1091
41 1 0.4781 2.2704 2.9675
42 1 0.2475 0.5164 2.6844
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754063719.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:45:10
Heat of formation + Delta-G solvation = -22.596640 kcal
Electronic energy + Delta-G solvation = -20544.507148 eV
Core-core repulsion = 17524.542267 eV
Total energy + Delta-G solvation = -3019.964881 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.62557 -39.63945 -37.53612 -36.39840 -33.82627 -32.72172 -31.54032 -29.37333
-29.20647 -26.13766 -24.68804 -24.16128 -22.96653 -21.67591 -20.62587 -19.74941
-19.13115 -18.36210 -17.42733 -17.16453 -16.58587 -16.09343 -15.58710 -15.24915
-15.13693 -14.98886 -14.63942 -14.24888 -14.06111 -13.93571 -13.65328 -13.09868
-12.93470 -12.81776 -12.74498 -12.50391 -12.40355 -12.27846 -12.19499 -12.14497
-12.10452 -11.88700 -11.68454 -10.99869 -10.95734 -10.78939 -10.50805 -9.74393
-9.10049 -7.99974 -5.31491 1.44415 1.49088 1.53731 1.55572 1.92941
2.54075 2.72479 3.31002 3.33386 3.73471 3.78637 3.83845 3.98606
4.09224 4.16290 4.18459 4.23507 4.27282 4.42417 4.45397 4.47875
4.52065 4.54229 4.66790 4.73061 4.87371 4.90002 4.96520 4.99557
5.05072 5.07915 5.10869 5.19380 5.34683 5.40367 5.42536 5.43631
5.56493 6.21081 6.41958 7.16016 7.27069 7.98266 8.24040 9.23286
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.031616 B = 0.003757 C = 0.003535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 885.421742 B = 7450.514732 C = 7918.563019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.093 3.907
3 N -0.603 5.603
4 C 0.122 3.878
5 C 0.151 3.849
6 N -0.743 5.743
7 C -0.255 4.255
8 H 0.073 0.927
9 C -0.073 4.073
10 N -0.968 5.968
11 Si 0.980 3.020
12 H -0.272 1.272
13 H -0.291 1.291
14 H -0.280 1.280
15 C 0.511 3.489
16 O -0.590 6.590
17 C -0.104 4.104
18 H 0.128 0.872
19 C -0.089 4.089
20 C -0.165 4.165
21 H 0.130 0.870
22 C -0.159 4.159
23 C -0.155 4.155
24 H 0.139 0.861
25 C -0.079 4.079
26 H 0.059 0.941
27 H 0.046 0.954
28 H 0.095 0.905
29 H 0.082 0.918
30 H 0.110 0.890
31 H 0.092 0.908
32 H 0.055 0.945
33 H -0.002 1.002
34 H 0.032 0.968
35 H 0.375 0.625
36 H 0.254 0.746
37 H 0.073 0.927
38 H 0.052 0.948
39 H 0.119 0.881
40 H 0.075 0.925
41 H 0.050 0.950
42 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.149 -13.235 21.632 26.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.029 4.029
3 N -0.335 5.335
4 C -0.002 4.002
5 C 0.023 3.977
6 N -0.387 5.387
7 C -0.386 4.386
8 H 0.091 0.909
9 C -0.265 4.265
10 N -0.618 5.618
11 Si 0.808 3.192
12 H -0.198 1.198
13 H -0.217 1.217
14 H -0.206 1.206
15 C 0.301 3.699
16 O -0.470 6.470
17 C -0.125 4.125
18 H 0.145 0.855
19 C -0.127 4.127
20 C -0.183 4.183
21 H 0.148 0.852
22 C -0.196 4.196
23 C -0.173 4.173
24 H 0.157 0.843
25 C -0.117 4.117
26 H 0.078 0.922
27 H 0.065 0.935
28 H 0.114 0.886
29 H 0.101 0.899
30 H 0.128 0.872
31 H 0.110 0.890
32 H 0.074 0.926
33 H 0.016 0.984
34 H 0.049 0.951
35 H 0.207 0.793
36 H 0.063 0.937
37 H 0.091 0.909
38 H 0.071 0.929
39 H 0.137 0.863
40 H 0.094 0.906
41 H 0.069 0.931
42 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -8.823 -12.707 21.584 26.555
hybrid contribution 0.722 0.851 -1.133 1.590
sum -8.101 -11.856 20.451 24.988
Atomic orbital electron populations
1.22245 0.94372 1.03862 1.02127 1.21996 0.95665 0.80217 1.04986
1.48067 1.64578 1.15692 1.05169 1.21274 0.96612 0.97006 0.85346
1.20935 0.95212 0.94953 0.86606 1.42394 1.14589 1.59076 1.22617
1.19569 0.92334 1.24861 1.01866 0.90858 1.25654 1.01468 1.00017
0.99365 1.69813 1.32611 1.36792 1.22616 0.85129 0.78792 0.77815
0.77514 1.19777 1.21684 1.20619 1.21308 0.75229 0.87166 0.86230
1.90687 1.49901 1.19019 1.87355 1.22575 0.98873 1.00773 0.90298
0.85473 1.21867 0.98664 0.99963 0.92208 1.23199 0.91633 1.05089
0.98399 0.85213 1.23158 1.01229 0.95616 0.99561 1.23289 0.98702
1.00935 0.94327 0.84325 1.21931 0.93902 1.02286 0.93595 0.92166
0.93506 0.88612 0.89931 0.87233 0.89019 0.92595 0.98442 0.95054
0.79298 0.93713 0.90856 0.92911 0.86323 0.90622 0.93122 0.87870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.46 10.14 71.98 0.73 -1.73 16
2 C 0.09 1.67 6.09 86.38 0.53 2.20 16
3 N -0.60 -17.14 2.47 -821.83 -2.03 -19.17 16
4 C 0.12 4.43 5.58 86.38 0.48 4.91 16
5 C 0.15 6.68 6.58 86.38 0.57 7.25 16
6 N -0.74 -40.68 5.60 -343.46 -1.92 -42.60 16
7 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16
8 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16
9 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16
10 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16
11 Si 0.98 47.34 29.55 68.60 2.03 49.37 16
12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16
13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
15 C 0.51 15.81 6.86 87.66 0.60 16.41 16
16 O -0.59 -24.71 15.35 -3.04 -0.05 -24.76 16
17 C -0.10 -2.16 2.46 -10.25 -0.03 -2.18 16
18 H 0.13 1.91 6.22 -2.39 -0.01 1.90 16
19 C -0.09 -1.99 5.92 31.67 0.19 -1.80 16
20 C -0.17 -2.60 6.94 -10.07 -0.07 -2.67 16
21 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16
22 C -0.16 -2.38 10.07 30.59 0.31 -2.07 16
23 C -0.15 -2.06 6.94 -10.07 -0.07 -2.13 16
24 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16
25 C -0.08 -1.32 5.77 31.67 0.18 -1.13 16
26 H 0.06 0.88 6.29 -2.39 -0.02 0.87 16
27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16
30 H 0.11 1.35 5.65 -2.39 -0.01 1.34 16
31 H 0.09 3.03 8.07 -2.38 -0.02 3.01 16
32 H 0.06 2.36 7.36 -2.39 -0.02 2.35 16
33 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16
34 H 0.03 1.31 8.14 -2.38 -0.02 1.30 16
35 H 0.38 21.49 7.67 -92.71 -0.71 20.78 16
36 H 0.25 15.41 8.31 -92.71 -0.77 14.63 16
37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.05 1.53 7.23 -2.39 -0.02 1.51 16
39 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16
40 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16
41 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16
42 H 0.10 1.19 6.53 -2.39 -0.02 1.18 16
Total: -1.00 -75.68 336.78 3.32 -72.36
By element:
Atomic # 1 Polarization: 26.25 SS G_CDS: 0.29 Total: 26.54 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: 4.73 Total: -1.01 kcal
Atomic # 7 Polarization: -118.83 SS G_CDS: -3.67 Total: -122.50 kcal
Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal
Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal
Total: -75.68 3.32 -72.36 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754063719.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.760 kcal
(2) G-P(sol) polarization free energy of solvation -75.681 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds