Wall clock time and date at job start Mon Mar 30 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00385 * 2 1 4 4 O 1.21280 * 120.00492 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99687 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47167 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47360 * 179.97438 * 6 5 3 8 8 C 1.53780 * 113.61810 * 274.13827 * 7 6 5 9 9 C 1.53951 * 87.02074 * 220.04678 * 8 7 6 10 10 C 1.53780 * 87.11264 * 25.36123 * 9 8 7 11 11 C 1.46499 * 119.99937 * 180.02562 * 2 1 3 12 12 C 1.53499 * 114.20527 * 59.99818 * 11 2 1 13 13 N 1.47066 * 87.98642 * 220.14732 * 12 11 2 14 14 C 1.36935 * 136.05905 * 207.08539 * 13 12 11 15 15 H 1.07996 * 120.00461 * 6.76058 * 14 13 12 16 16 C 1.38816 * 119.99877 * 186.76278 * 14 13 12 17 17 N 1.31618 * 119.99884 * 172.25761 * 16 14 13 18 18 Si 1.86798 * 120.00153 * 352.25282 * 16 14 13 19 19 H 1.48497 * 109.47359 * 175.36223 * 18 16 14 20 20 H 1.48503 * 109.47030 * 295.36478 * 18 16 14 21 21 H 1.48505 * 109.46945 * 55.36328 * 18 16 14 22 22 C 1.47070 * 87.88468 * 27.34150 * 13 12 11 23 23 H 1.09003 * 109.46861 * 269.99563 * 1 2 3 24 24 H 1.08999 * 109.47091 * 29.99510 * 1 2 3 25 25 H 1.08998 * 109.47582 * 149.99539 * 1 2 3 26 26 H 1.08997 * 109.46845 * 299.99691 * 5 3 2 27 27 H 1.08999 * 109.47327 * 59.99287 * 5 3 2 28 28 H 1.09006 * 109.47280 * 300.00471 * 6 5 3 29 29 H 1.09008 * 109.47151 * 59.99904 * 6 5 3 30 30 H 1.08999 * 112.84488 * 45.33983 * 7 6 5 31 31 H 1.09003 * 113.61299 * 334.56507 * 8 7 6 32 32 H 1.09000 * 113.61347 * 105.46910 * 8 7 6 33 33 H 1.08995 * 113.53826 * 270.81325 * 9 8 7 34 34 H 1.08996 * 113.67035 * 139.93021 * 9 8 7 35 35 H 1.09001 * 113.61823 * 220.09004 * 10 9 8 36 36 H 1.09006 * 113.69173 * 89.19750 * 10 9 8 37 37 H 1.08993 * 113.28511 * 193.06317 * 11 2 1 38 38 H 1.09001 * 113.46838 * 105.36625 * 12 11 2 39 39 H 1.08996 * 113.52140 * 334.93417 * 12 11 2 40 40 H 0.97004 * 120.00412 * 4.87236 * 17 16 14 41 41 H 1.09004 * 113.46535 * 87.44030 * 22 13 12 42 42 H 1.08996 * 113.46991 * 217.87726 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.2191 5.4432 -1.4043 9 6 1.5843 6.8622 -0.9319 10 6 2.5247 6.1969 0.0869 11 6 2.1975 -1.2687 -0.0006 12 6 1.9059 -2.1632 -1.2134 13 7 1.9168 -3.3161 -0.3004 14 6 2.1883 -4.6542 -0.4050 15 1 2.5822 -5.0548 -1.3272 16 6 1.9570 -5.4957 0.6745 17 7 2.0717 -6.7989 0.5294 18 14 1.4834 -4.7788 2.3331 19 1 1.1844 -5.8813 3.2819 20 1 2.6078 -3.9640 2.8595 21 1 0.2813 -3.9209 2.1765 22 6 1.5015 -2.4006 0.7731 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 0.7585 2.5302 -0.8892 27 1 0.7590 2.5299 0.8907 28 1 3.0064 3.5770 0.8911 29 1 3.0063 3.5778 -0.8890 30 1 0.7914 4.9736 0.7153 31 1 1.8680 5.0655 -2.1945 32 1 0.1599 5.3155 -1.6278 33 1 0.7519 7.3962 -0.4738 34 1 2.1048 7.4537 -1.6851 35 1 2.5181 6.6769 1.0655 36 1 3.5317 6.0253 -0.2935 37 1 3.2575 -1.1543 0.2258 38 1 2.7143 -2.1807 -1.9443 39 1 0.9321 -1.9778 -1.6666 40 1 2.3859 -7.1676 -0.3110 41 1 0.4208 -2.2771 0.8443 42 1 1.9654 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754572758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:26 Heat of formation + Delta-G solvation = 40.097236 kcal Electronic energy + Delta-G solvation = -20322.044764 eV Core-core repulsion = 17304.798493 eV Total energy + Delta-G solvation = -3017.246271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17783 -39.12902 -38.02281 -34.67119 -32.87961 -32.17773 -28.25979 -26.94251 -26.36981 -25.80925 -25.39122 -23.08195 -21.73125 -19.81467 -19.60995 -18.71429 -17.56712 -17.00609 -16.19781 -16.06346 -15.62072 -15.27863 -14.63128 -14.36318 -13.76207 -13.53535 -13.18526 -12.96912 -12.86556 -12.69953 -12.37680 -12.24165 -12.02757 -11.92617 -11.62130 -11.48536 -11.27439 -11.13534 -10.80761 -10.54189 -10.45044 -10.42157 -10.33393 -9.62616 -9.39761 -9.23772 -8.88763 -8.28993 -7.18917 -6.35668 -3.26850 2.76154 3.12300 3.38394 3.42768 3.63016 4.30505 4.38600 4.41479 4.56406 4.59001 4.65342 4.80301 4.94818 5.07836 5.08710 5.17215 5.30866 5.38918 5.42765 5.44841 5.50379 5.53768 5.55656 5.63400 5.66444 5.67307 5.82582 5.84838 5.89335 6.05247 6.12205 6.14375 6.21108 6.30190 6.35053 6.49433 6.95908 7.04501 7.58807 8.20668 8.33458 8.94183 9.45901 10.30826 11.17097 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.003488 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.066604 B = 8026.612361 C = 8123.652491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.510 3.490 4 O -0.544 6.544 5 C -0.137 4.137 6 C -0.094 4.094 7 C -0.111 4.111 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.138 4.138 11 C 0.099 3.901 12 C 0.112 3.888 13 N -0.621 5.621 14 C -0.305 4.305 15 H 0.085 0.915 16 C -0.024 4.024 17 N -0.932 5.932 18 Si 1.071 2.929 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.091 3.909 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.049 0.951 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 25.885 -1.189 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C 0.298 3.702 4 O -0.422 6.422 5 C -0.177 4.177 6 C -0.132 4.132 7 C -0.130 4.130 8 C -0.176 4.176 9 C -0.182 4.182 10 C -0.175 4.175 11 C -0.005 4.005 12 C -0.016 4.016 13 N -0.350 5.350 14 C -0.431 4.431 15 H 0.102 0.898 16 C -0.223 4.223 17 N -0.574 5.574 18 Si 0.904 3.096 19 H -0.221 1.221 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.035 4.035 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.152 25.171 0.321 25.695 hybrid contribution 0.209 0.270 -1.641 1.676 sum -4.943 25.441 -1.320 25.950 Atomic orbital electron populations 1.21830 0.79797 1.03276 1.01987 1.47960 1.06913 1.06106 1.72629 1.20772 0.88140 0.85411 0.75879 1.90683 1.14107 1.87483 1.49913 1.21700 0.99565 0.92386 1.04008 1.21338 0.96977 0.91355 1.03556 1.22589 0.98691 0.94047 0.97645 1.23032 1.01355 0.96282 0.96980 1.22839 0.99647 0.96553 0.99134 1.22934 0.98493 0.96648 0.99461 1.23575 0.97831 0.79980 0.99091 1.22744 0.98680 0.86327 0.93852 1.45697 1.79829 1.04095 1.05349 1.20119 1.42055 0.79272 1.01620 0.89759 1.25763 0.99726 0.94330 1.02452 1.70922 1.47632 1.09775 1.29053 0.83680 0.76206 0.73846 0.75862 1.22117 1.22077 1.21421 1.23176 0.97724 0.88231 0.94391 0.92449 0.91182 0.90345 0.89071 0.89138 0.91111 0.91126 0.89303 0.90036 0.91644 0.90408 0.91663 0.91666 0.90008 0.85855 0.93344 0.94301 0.92846 0.93306 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.92 59.85 0.53 1.36 16 2 N -0.60 -9.00 3.11 -173.55 -0.54 -9.54 16 3 C 0.51 7.47 7.67 -10.98 -0.08 7.38 16 4 O -0.54 -10.12 15.49 5.56 0.09 -10.03 16 5 C -0.14 -1.34 4.25 -27.88 -0.12 -1.46 16 6 C -0.09 -0.93 4.33 -26.74 -0.12 -1.04 16 7 C -0.11 -0.85 3.64 -89.81 -0.33 -1.17 16 8 C -0.14 -0.99 7.65 -25.83 -0.20 -1.18 16 9 C -0.14 -0.96 8.09 -25.83 -0.21 -1.16 16 10 C -0.14 -1.01 7.65 -25.92 -0.20 -1.21 16 11 C 0.10 1.87 4.57 -67.67 -0.31 1.56 16 12 C 0.11 2.27 8.24 -8.50 -0.07 2.20 16 13 N -0.62 -15.56 3.70 -184.61 -0.68 -16.25 16 14 C -0.30 -8.91 11.08 -15.06 -0.17 -9.07 16 15 H 0.08 2.59 8.05 -52.49 -0.42 2.16 16 16 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 17 N -0.93 -29.60 13.70 55.49 0.76 -28.84 16 18 Si 1.07 26.99 25.13 -169.99 -4.27 22.71 16 19 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.29 -7.08 6.65 56.52 0.38 -6.71 16 21 H -0.29 -6.63 6.13 56.52 0.35 -6.28 16 22 C 0.09 1.94 5.13 -8.37 -0.04 1.90 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 25 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 26 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 27 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.07 0.78 7.83 -51.92 -0.41 0.37 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.12 2.54 7.29 -51.93 -0.38 2.16 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.73 6.97 -51.93 -0.36 0.37 16 40 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 41 H 0.05 0.98 6.16 -51.93 -0.32 0.66 16 42 H 0.05 1.20 4.65 -51.93 -0.24 0.96 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -33.85 326.63 -8.16 -42.02 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.04 Total: -2.29 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.40 Total: -2.70 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.46 Total: -54.62 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -4.27 Total: 22.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.85 -8.16 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754572758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.112 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds