Wall clock time and date at job start Mon Mar 30 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00385 * 2 1 4 4 O 1.21280 * 120.00492 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99687 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47167 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47360 * 179.97438 * 6 5 3 8 8 C 1.53780 * 113.61810 * 274.13827 * 7 6 5 9 9 C 1.53951 * 87.02074 * 220.04678 * 8 7 6 10 10 C 1.53780 * 87.11264 * 25.36123 * 9 8 7 11 11 C 1.46499 * 119.99937 * 180.02562 * 2 1 3 12 12 C 1.53499 * 114.20527 * 59.99818 * 11 2 1 13 13 N 1.47066 * 87.98642 * 220.14732 * 12 11 2 14 14 C 1.36935 * 136.05905 * 207.08539 * 13 12 11 15 15 H 1.07996 * 120.00461 * 6.76058 * 14 13 12 16 16 C 1.38816 * 119.99877 * 186.76278 * 14 13 12 17 17 N 1.31618 * 119.99884 * 172.25761 * 16 14 13 18 18 Si 1.86798 * 120.00153 * 352.25282 * 16 14 13 19 19 H 1.48497 * 109.47359 * 175.36223 * 18 16 14 20 20 H 1.48503 * 109.47030 * 295.36478 * 18 16 14 21 21 H 1.48505 * 109.46945 * 55.36328 * 18 16 14 22 22 C 1.47070 * 87.88468 * 27.34150 * 13 12 11 23 23 H 1.09003 * 109.46861 * 269.99563 * 1 2 3 24 24 H 1.08999 * 109.47091 * 29.99510 * 1 2 3 25 25 H 1.08998 * 109.47582 * 149.99539 * 1 2 3 26 26 H 1.08997 * 109.46845 * 299.99691 * 5 3 2 27 27 H 1.08999 * 109.47327 * 59.99287 * 5 3 2 28 28 H 1.09006 * 109.47280 * 300.00471 * 6 5 3 29 29 H 1.09008 * 109.47151 * 59.99904 * 6 5 3 30 30 H 1.08999 * 112.84488 * 45.33983 * 7 6 5 31 31 H 1.09003 * 113.61299 * 334.56507 * 8 7 6 32 32 H 1.09000 * 113.61347 * 105.46910 * 8 7 6 33 33 H 1.08995 * 113.53826 * 270.81325 * 9 8 7 34 34 H 1.08996 * 113.67035 * 139.93021 * 9 8 7 35 35 H 1.09001 * 113.61823 * 220.09004 * 10 9 8 36 36 H 1.09006 * 113.69173 * 89.19750 * 10 9 8 37 37 H 1.08993 * 113.28511 * 193.06317 * 11 2 1 38 38 H 1.09001 * 113.46838 * 105.36625 * 12 11 2 39 39 H 1.08996 * 113.52140 * 334.93417 * 12 11 2 40 40 H 0.97004 * 120.00412 * 4.87236 * 17 16 14 41 41 H 1.09004 * 113.46535 * 87.44030 * 22 13 12 42 42 H 1.08996 * 113.46991 * 217.87726 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.2191 5.4432 -1.4043 9 6 1.5843 6.8622 -0.9319 10 6 2.5247 6.1969 0.0869 11 6 2.1975 -1.2687 -0.0006 12 6 1.9059 -2.1632 -1.2134 13 7 1.9168 -3.3161 -0.3004 14 6 2.1883 -4.6542 -0.4050 15 1 2.5822 -5.0548 -1.3272 16 6 1.9570 -5.4957 0.6745 17 7 2.0717 -6.7989 0.5294 18 14 1.4834 -4.7788 2.3331 19 1 1.1844 -5.8813 3.2819 20 1 2.6078 -3.9640 2.8595 21 1 0.2813 -3.9209 2.1765 22 6 1.5015 -2.4006 0.7731 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 0.7585 2.5302 -0.8892 27 1 0.7590 2.5299 0.8907 28 1 3.0064 3.5770 0.8911 29 1 3.0063 3.5778 -0.8890 30 1 0.7914 4.9736 0.7153 31 1 1.8680 5.0655 -2.1945 32 1 0.1599 5.3155 -1.6278 33 1 0.7519 7.3962 -0.4738 34 1 2.1048 7.4537 -1.6851 35 1 2.5181 6.6769 1.0655 36 1 3.5317 6.0253 -0.2935 37 1 3.2575 -1.1543 0.2258 38 1 2.7143 -2.1807 -1.9443 39 1 0.9321 -1.9778 -1.6666 40 1 2.3859 -7.1676 -0.3110 41 1 0.4208 -2.2771 0.8443 42 1 1.9654 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754572758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:26 Heat of formation + Delta-G solvation = 17.644419 kcal Electronic energy + Delta-G solvation = -20323.018392 eV Core-core repulsion = 17304.798493 eV Total energy + Delta-G solvation = -3018.219898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45729 -39.99917 -39.28761 -36.02545 -34.49263 -33.54078 -30.03128 -27.90896 -27.40254 -27.07045 -26.37414 -24.51957 -22.83360 -21.33951 -20.28208 -19.91049 -19.60017 -18.23851 -17.57452 -17.02834 -16.88536 -16.33389 -15.89315 -15.45876 -15.15225 -15.05751 -14.68459 -13.94176 -13.72733 -13.69562 -13.47940 -13.33302 -13.24973 -13.21668 -13.05408 -12.80602 -12.35440 -12.23287 -12.19022 -11.84676 -11.44700 -11.36459 -11.20684 -11.09003 -11.03886 -10.93087 -10.67919 -9.58402 -9.25821 -8.71209 -5.53829 1.36100 1.46655 1.63184 1.67175 1.94702 2.50378 2.92770 3.20511 3.49771 3.62294 3.73019 3.82782 3.97206 4.05280 4.08272 4.21584 4.24916 4.36839 4.41931 4.47902 4.54905 4.63025 4.70737 4.74349 4.78682 4.90679 4.95439 4.96597 5.00921 5.06979 5.09294 5.10085 5.14512 5.23626 5.36688 5.49206 5.58009 5.73178 5.88809 6.46218 6.63729 7.20333 7.25351 8.18454 8.84274 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.003488 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.066604 B = 8026.612361 C = 8123.652491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.504 3.496 4 O -0.593 6.593 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.139 4.139 9 C -0.141 4.141 10 C -0.145 4.145 11 C 0.121 3.879 12 C 0.113 3.887 13 N -0.655 5.655 14 C -0.295 4.295 15 H 0.051 0.949 16 C -0.082 4.082 17 N -0.966 5.966 18 Si 1.109 2.891 19 H -0.301 1.301 20 H -0.281 1.281 21 H -0.249 1.249 22 C 0.091 3.909 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.247 0.753 41 H 0.077 0.923 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 29.188 -0.387 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.335 5.335 3 C 0.295 3.705 4 O -0.473 6.473 5 C -0.163 4.163 6 C -0.130 4.130 7 C -0.123 4.123 8 C -0.176 4.176 9 C -0.178 4.178 10 C -0.183 4.183 11 C 0.015 3.985 12 C -0.013 4.013 13 N -0.384 5.384 14 C -0.422 4.422 15 H 0.069 0.931 16 C -0.274 4.274 17 N -0.611 5.611 18 Si 0.935 3.065 19 H -0.229 1.229 20 H -0.209 1.209 21 H -0.173 1.173 22 C -0.035 4.035 23 H 0.094 0.906 24 H 0.128 0.872 25 H 0.088 0.912 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.896 28.547 1.087 29.639 hybrid contribution 1.118 -0.676 -2.010 2.398 sum -6.778 27.871 -0.923 28.698 Atomic orbital electron populations 1.22167 0.76869 1.04895 1.03717 1.47982 1.08539 1.04501 1.72434 1.21708 0.87832 0.86626 0.74345 1.90672 1.16579 1.88156 1.51941 1.21751 0.99253 0.88726 1.06616 1.21285 0.97007 0.92955 1.01740 1.22580 0.98786 0.92442 0.98504 1.23026 1.01945 0.96334 0.96307 1.22849 0.99692 0.96488 0.98816 1.22971 0.98221 0.97058 1.00022 1.22830 0.96927 0.81675 0.97077 1.22915 0.99608 0.84808 0.93992 1.45717 1.80571 1.03550 1.08575 1.19965 1.40346 0.81752 1.00148 0.93137 1.27148 1.00183 0.94037 1.06067 1.71028 1.50365 1.11252 1.28467 0.83262 0.77848 0.73783 0.71648 1.22907 1.20866 1.17305 1.23356 0.99159 0.87739 0.93196 0.90639 0.87239 0.91158 0.86295 0.86176 0.92995 0.93117 0.87595 0.90943 0.90311 0.89248 0.91670 0.91191 0.91140 0.88226 0.94313 0.91548 0.94408 0.90587 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 8.92 127.77 1.14 2.24 16 2 N -0.60 -16.02 3.11 -821.39 -2.56 -18.57 16 3 C 0.50 13.51 7.67 87.66 0.67 14.18 16 4 O -0.59 -21.80 15.49 -3.03 -0.05 -21.84 16 5 C -0.12 -1.92 4.25 29.85 0.13 -1.80 16 6 C -0.09 -1.62 4.33 30.59 0.13 -1.48 16 7 C -0.10 -1.28 3.64 -10.27 -0.04 -1.32 16 8 C -0.14 -1.55 7.65 31.18 0.24 -1.31 16 9 C -0.14 -1.51 8.09 31.18 0.25 -1.26 16 10 C -0.15 -1.87 7.65 31.12 0.24 -1.63 16 11 C 0.12 4.36 4.57 45.55 0.21 4.57 16 12 C 0.11 4.48 8.24 83.18 0.69 5.17 16 13 N -0.66 -32.44 3.70 -737.97 -2.73 -35.17 16 14 C -0.29 -17.61 11.08 84.03 0.93 -16.68 16 15 H 0.05 3.26 8.05 -2.91 -0.02 3.24 16 16 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 17 N -0.97 -63.27 13.70 21.65 0.30 -62.98 16 18 Si 1.11 53.72 25.13 68.60 1.72 55.45 16 19 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 20 H -0.28 -12.98 6.65 99.48 0.66 -12.31 16 21 H -0.25 -10.36 6.13 99.48 0.61 -9.75 16 22 C 0.09 3.65 5.13 83.27 0.43 4.08 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.11 1.03 6.44 -2.39 -0.02 1.02 16 25 H 0.07 1.36 6.17 -2.39 -0.01 1.34 16 26 H 0.12 1.26 7.40 -2.39 -0.02 1.24 16 27 H 0.12 1.25 8.11 -2.39 -0.02 1.23 16 28 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 29 H 0.05 1.08 7.83 -2.38 -0.02 1.07 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.95 7.92 -2.39 -0.02 0.93 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16 37 H 0.10 4.11 7.29 -2.39 -0.02 4.09 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.31 6.97 -2.39 -0.02 2.29 16 40 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 41 H 0.08 2.69 6.16 -2.38 -0.01 2.68 16 42 H 0.05 1.92 4.65 -2.39 -0.01 1.91 16 Total: -1.00 -77.04 326.63 2.98 -74.06 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.81 Total: 8.84 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.48 Total: 0.21 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -4.99 Total: -116.72 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 1.72 Total: 55.45 kcal Total: -77.04 2.98 -74.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754572758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.708 kcal (2) G-P(sol) polarization free energy of solvation -77.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds