Wall clock time and date at job start Mon Mar 30 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99777 * 2 1 4 4 H 1.07998 * 120.00212 * 322.69601 * 3 2 1 5 5 C 1.38819 * 119.99650 * 142.69415 * 3 2 1 6 6 N 1.31621 * 119.99554 * 158.72432 * 5 3 2 7 7 Si 1.86801 * 120.00176 * 338.72206 * 5 3 2 8 8 H 1.48501 * 109.46997 * 95.34048 * 7 5 3 9 9 H 1.48495 * 109.47203 * 215.34184 * 7 5 3 10 10 H 1.48495 * 109.47150 * 335.34470 * 7 5 3 11 11 C 1.46501 * 119.99987 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47100 * 92.01091 * 11 2 1 13 13 H 1.08998 * 109.99766 * 52.64622 * 12 11 2 14 14 C 1.54337 * 109.98805 * 291.60994 * 12 11 2 15 15 C 1.55155 * 103.01656 * 218.66837 * 14 12 11 16 16 C 1.54903 * 101.58514 * 35.30768 * 15 14 12 17 17 N 1.47015 * 109.87994 * 173.74274 * 12 11 2 18 18 C 1.34781 * 125.65113 * 298.39183 * 17 12 11 19 19 O 1.21278 * 119.99847 * 355.24486 * 18 17 12 20 20 C 1.50703 * 119.99781 * 174.97149 * 18 17 12 21 21 C 1.53007 * 109.46640 * 180.27472 * 20 18 17 22 22 C 1.53003 * 117.49763 * 243.62194 * 21 20 18 23 23 C 1.53002 * 117.49641 * 175.00153 * 21 20 18 24 24 H 1.08996 * 109.47738 * 265.97619 * 1 2 3 25 25 H 1.09007 * 109.47177 * 25.98147 * 1 2 3 26 26 H 1.09004 * 109.46976 * 145.97086 * 1 2 3 27 27 H 0.97003 * 119.99590 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47001 * 332.00514 * 11 2 1 29 29 H 1.09005 * 109.46835 * 212.01095 * 11 2 1 30 30 H 1.08996 * 110.85156 * 100.19680 * 14 12 11 31 31 H 1.09000 * 110.66949 * 337.04676 * 14 12 11 32 32 H 1.09001 * 110.99969 * 277.22947 * 15 14 12 33 33 H 1.09003 * 111.00572 * 153.38385 * 15 14 12 34 34 H 1.09008 * 110.36568 * 204.15149 * 16 15 14 35 35 H 1.08999 * 110.36975 * 81.82954 * 16 15 14 36 36 H 1.08998 * 109.47298 * 300.27069 * 20 18 17 37 37 H 1.08994 * 109.47161 * 60.27680 * 20 18 17 38 38 H 1.09005 * 115.54775 * 29.32905 * 21 20 18 39 39 H 1.08997 * 117.49341 * 359.97438 * 22 21 20 40 40 H 1.08995 * 117.49553 * 145.02174 * 22 21 20 41 41 H 1.08995 * 117.49300 * 214.98347 * 23 21 20 42 42 H 1.08997 * 117.49561 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7753 2.0256 -0.5668 5 6 3.3248 1.3089 0.7286 6 7 4.1930 2.2498 0.4232 7 14 3.6738 0.1392 2.1426 8 1 4.5166 -0.9840 1.6594 9 1 4.3894 0.8664 3.2216 10 1 2.3929 -0.3950 2.6709 11 6 2.1975 -1.2687 0.0006 12 6 2.4963 -1.6857 -1.4409 13 1 2.9871 -0.8695 -1.9709 14 6 1.1859 -2.0642 -2.1630 15 6 1.6030 -3.2827 -3.0282 16 6 2.6350 -3.9796 -2.1069 17 7 3.3583 -2.8767 -1.4483 18 6 4.6016 -2.9497 -0.9331 19 8 5.1315 -1.9553 -0.4845 20 6 5.3309 -4.2683 -0.9089 21 6 6.7086 -4.0774 -0.2711 22 6 7.9351 -4.3340 -1.1491 23 6 7.5623 -5.3271 -0.0465 24 1 -0.3634 -0.0721 1.0251 25 1 -0.3634 0.9239 -0.4502 26 1 -0.3633 -0.8517 -0.5751 27 1 5.0144 2.3354 0.9321 28 1 1.5933 -2.0369 0.4833 29 1 3.1338 -1.1474 0.5453 30 1 0.8392 -1.2447 -2.7926 31 1 0.4178 -2.3471 -1.4432 32 1 2.0666 -2.9596 -3.9602 33 1 0.7507 -3.9338 -3.2228 34 1 3.3227 -4.5851 -2.6975 35 1 2.1265 -4.5959 -1.3655 36 1 4.7578 -4.9898 -0.3266 37 1 5.4501 -4.6363 -1.9279 38 1 6.7773 -3.2809 0.4699 39 1 7.7605 -4.6391 -2.1808 40 1 8.8110 -3.7062 -0.9858 41 1 8.1929 -5.3526 0.8422 42 1 7.1423 -6.2851 -0.3526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755187409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:57 Heat of formation + Delta-G solvation = 20.027716 kcal Electronic energy + Delta-G solvation = -21543.273780 eV Core-core repulsion = 18525.157229 eV Total energy + Delta-G solvation = -3018.116551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89372 -37.83310 -36.52281 -35.38589 -31.72138 -31.31420 -29.97388 -28.61208 -26.42564 -25.00485 -22.91831 -22.39495 -21.24262 -20.94259 -20.08404 -18.58748 -16.87028 -16.74679 -15.97334 -15.54828 -15.23101 -14.49964 -14.15496 -14.08589 -13.79823 -13.21668 -13.11507 -12.77847 -12.60246 -12.57743 -12.31345 -11.88035 -11.56237 -11.49851 -11.41232 -11.12722 -11.00712 -10.92116 -10.57498 -10.40148 -10.34768 -10.21393 -9.98098 -9.60266 -9.41536 -9.19573 -8.30137 -8.22666 -6.69009 -5.84240 -3.27430 3.08643 3.30428 3.59425 3.64802 3.70676 3.82599 4.61014 4.71668 4.72290 4.74597 4.90832 4.99673 5.06194 5.20176 5.26287 5.38822 5.50270 5.53629 5.56311 5.58072 5.64952 5.70589 5.71396 5.87471 5.88234 6.06858 6.07967 6.18717 6.23962 6.34830 6.38506 6.41241 6.60110 6.71071 6.76445 6.89950 7.05372 7.96555 8.19753 8.49856 8.67844 9.11083 9.86773 10.24250 11.30967 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.008180 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.067946 B = 3422.305330 C = 4695.306121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.607 5.607 3 C -0.282 4.282 4 H 0.077 0.923 5 C 0.048 3.952 6 N -0.897 5.897 7 Si 0.869 3.131 8 H -0.256 1.256 9 H -0.307 1.307 10 H -0.279 1.279 11 C 0.130 3.870 12 C 0.119 3.881 13 H 0.084 0.916 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.515 3.485 19 O -0.509 6.509 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.177 4.177 23 C -0.182 4.182 24 H 0.004 0.996 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 -18.280 -5.945 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.331 5.331 3 C -0.410 4.410 4 H 0.095 0.905 5 C -0.153 4.153 6 N -0.538 5.538 7 Si 0.699 3.301 8 H -0.182 1.182 9 H -0.236 1.236 10 H -0.205 1.205 11 C 0.003 3.997 12 C 0.014 3.986 13 H 0.102 0.898 14 C -0.155 4.155 15 C -0.173 4.173 16 C -0.022 4.022 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.383 6.383 20 C -0.143 4.143 21 C -0.158 4.158 22 C -0.214 4.214 23 C -0.219 4.219 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.649 -17.618 -5.621 18.505 hybrid contribution 0.239 -0.631 0.754 1.012 sum -0.409 -18.249 -4.867 18.892 Atomic orbital electron populations 1.21164 0.84756 0.99026 0.97338 1.43935 1.00578 1.01828 1.86785 1.18703 1.06094 0.90518 1.25712 0.90541 1.25361 0.96543 0.96035 0.97387 1.69846 1.08832 1.35192 1.39894 0.86994 0.78050 0.81894 0.83114 1.18189 1.23571 1.20457 1.21518 0.97163 0.87707 0.93285 1.22440 0.89110 0.86822 1.00188 0.89838 1.22674 0.97037 0.97427 0.98380 1.22790 0.98389 0.97797 0.98302 1.22246 0.94581 0.90160 0.95255 1.48700 1.14772 1.13277 1.58896 1.20195 0.80304 0.90929 0.78327 1.90854 1.65388 1.37218 1.44805 1.21185 0.95179 0.95904 1.02039 1.22109 0.90254 1.00206 1.03228 1.23001 0.99522 1.02932 0.95956 1.22975 1.03998 0.94093 1.00867 0.97818 0.93714 0.95249 0.92807 0.94806 0.91189 0.90257 0.90952 0.90881 0.90380 0.91270 0.91837 0.89036 0.89389 0.86273 0.88994 0.88779 0.88832 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 10.45 59.84 0.63 3.13 16 2 N -0.61 -15.17 2.40 -181.11 -0.44 -15.60 16 3 C -0.28 -8.35 9.91 -15.06 -0.15 -8.49 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 5 C 0.05 1.50 5.33 -17.43 -0.09 1.41 16 6 N -0.90 -29.29 13.97 55.49 0.78 -28.52 16 7 Si 0.87 24.38 24.95 -169.99 -4.24 20.13 16 8 H -0.26 -7.20 5.50 56.52 0.31 -6.89 16 9 H -0.31 -8.70 7.11 56.52 0.40 -8.29 16 10 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 11 C 0.13 3.02 4.06 -4.04 -0.02 3.00 16 12 C 0.12 2.36 3.08 -66.95 -0.21 2.16 16 13 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 14 C -0.12 -1.75 5.44 -24.89 -0.14 -1.89 16 15 C -0.13 -1.51 7.09 -24.59 -0.17 -1.68 16 16 C 0.10 1.18 6.65 -2.53 -0.02 1.17 16 17 N -0.62 -10.61 3.06 -163.01 -0.50 -11.11 16 18 C 0.51 9.59 7.57 -10.98 -0.08 9.51 16 19 O -0.51 -12.35 13.58 5.56 0.08 -12.27 16 20 C -0.10 -1.37 5.06 -27.88 -0.14 -1.51 16 21 C -0.14 -1.95 5.41 -90.61 -0.49 -2.44 16 22 C -0.18 -2.08 10.18 -26.73 -0.27 -2.35 16 23 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 25 H 0.04 0.89 8.01 -51.93 -0.42 0.48 16 26 H 0.03 0.50 5.82 -51.93 -0.30 0.20 16 27 H 0.26 8.22 8.31 -40.82 -0.34 7.88 16 28 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 29 H 0.07 1.85 1.79 -51.93 -0.09 1.76 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.65 7.52 -51.92 -0.39 0.26 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.95 7.52 -51.93 -0.39 0.56 16 38 H 0.12 2.05 7.31 -51.93 -0.38 1.67 16 39 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 326.15 15.07 4.91 4.91 Total: -1.00 -35.84 326.15 -7.84 -43.68 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.00 Total: -1.03 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.43 Total: -0.20 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.16 Total: -55.23 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.24 Total: 20.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.84 -7.84 -43.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755187409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.705 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds