Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99777 * 2 1 4 4 H 1.07998 * 120.00212 * 322.69601 * 3 2 1 5 5 C 1.38819 * 119.99650 * 142.69415 * 3 2 1 6 6 N 1.31621 * 119.99554 * 158.72432 * 5 3 2 7 7 Si 1.86801 * 120.00176 * 338.72206 * 5 3 2 8 8 H 1.48501 * 109.46997 * 95.34048 * 7 5 3 9 9 H 1.48495 * 109.47203 * 215.34184 * 7 5 3 10 10 H 1.48495 * 109.47150 * 335.34470 * 7 5 3 11 11 C 1.46501 * 119.99987 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47100 * 92.01091 * 11 2 1 13 13 H 1.08998 * 109.99766 * 52.64622 * 12 11 2 14 14 C 1.54337 * 109.98805 * 291.60994 * 12 11 2 15 15 C 1.55155 * 103.01656 * 218.66837 * 14 12 11 16 16 C 1.54903 * 101.58514 * 35.30768 * 15 14 12 17 17 N 1.47015 * 109.87994 * 173.74274 * 12 11 2 18 18 C 1.34781 * 125.65113 * 298.39183 * 17 12 11 19 19 O 1.21278 * 119.99847 * 355.24486 * 18 17 12 20 20 C 1.50703 * 119.99781 * 174.97149 * 18 17 12 21 21 C 1.53007 * 109.46640 * 180.27472 * 20 18 17 22 22 C 1.53003 * 117.49763 * 243.62194 * 21 20 18 23 23 C 1.53002 * 117.49641 * 175.00153 * 21 20 18 24 24 H 1.08996 * 109.47738 * 265.97619 * 1 2 3 25 25 H 1.09007 * 109.47177 * 25.98147 * 1 2 3 26 26 H 1.09004 * 109.46976 * 145.97086 * 1 2 3 27 27 H 0.97003 * 119.99590 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47001 * 332.00514 * 11 2 1 29 29 H 1.09005 * 109.46835 * 212.01095 * 11 2 1 30 30 H 1.08996 * 110.85156 * 100.19680 * 14 12 11 31 31 H 1.09000 * 110.66949 * 337.04676 * 14 12 11 32 32 H 1.09001 * 110.99969 * 277.22947 * 15 14 12 33 33 H 1.09003 * 111.00572 * 153.38385 * 15 14 12 34 34 H 1.09008 * 110.36568 * 204.15149 * 16 15 14 35 35 H 1.08999 * 110.36975 * 81.82954 * 16 15 14 36 36 H 1.08998 * 109.47298 * 300.27069 * 20 18 17 37 37 H 1.08994 * 109.47161 * 60.27680 * 20 18 17 38 38 H 1.09005 * 115.54775 * 29.32905 * 21 20 18 39 39 H 1.08997 * 117.49341 * 359.97438 * 22 21 20 40 40 H 1.08995 * 117.49553 * 145.02174 * 22 21 20 41 41 H 1.08995 * 117.49300 * 214.98347 * 23 21 20 42 42 H 1.08997 * 117.49561 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7753 2.0256 -0.5668 5 6 3.3248 1.3089 0.7286 6 7 4.1930 2.2498 0.4232 7 14 3.6738 0.1392 2.1426 8 1 4.5166 -0.9840 1.6594 9 1 4.3894 0.8664 3.2216 10 1 2.3929 -0.3950 2.6709 11 6 2.1975 -1.2687 0.0006 12 6 2.4963 -1.6857 -1.4409 13 1 2.9871 -0.8695 -1.9709 14 6 1.1859 -2.0642 -2.1630 15 6 1.6030 -3.2827 -3.0282 16 6 2.6350 -3.9796 -2.1069 17 7 3.3583 -2.8767 -1.4483 18 6 4.6016 -2.9497 -0.9331 19 8 5.1315 -1.9553 -0.4845 20 6 5.3309 -4.2683 -0.9089 21 6 6.7086 -4.0774 -0.2711 22 6 7.9351 -4.3340 -1.1491 23 6 7.5623 -5.3271 -0.0465 24 1 -0.3634 -0.0721 1.0251 25 1 -0.3634 0.9239 -0.4502 26 1 -0.3633 -0.8517 -0.5751 27 1 5.0144 2.3354 0.9321 28 1 1.5933 -2.0369 0.4833 29 1 3.1338 -1.1474 0.5453 30 1 0.8392 -1.2447 -2.7926 31 1 0.4178 -2.3471 -1.4432 32 1 2.0666 -2.9596 -3.9602 33 1 0.7507 -3.9338 -3.2228 34 1 3.3227 -4.5851 -2.6975 35 1 2.1265 -4.5959 -1.3655 36 1 4.7578 -4.9898 -0.3266 37 1 5.4501 -4.6363 -1.9279 38 1 6.7773 -3.2809 0.4699 39 1 7.7605 -4.6391 -2.1808 40 1 8.8110 -3.7062 -0.9858 41 1 8.1929 -5.3526 0.8422 42 1 7.1423 -6.2851 -0.3526 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755187409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -4.795336 kcal Electronic energy + Delta-G solvation = -21544.350188 eV Core-core repulsion = 18525.157229 eV Total energy + Delta-G solvation = -3019.192959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24370 -39.08907 -37.75779 -37.18649 -33.84317 -32.76167 -31.33432 -29.79120 -28.24179 -26.73941 -24.26124 -23.24987 -22.92558 -22.25491 -21.30835 -19.93485 -18.81653 -18.10938 -17.36667 -17.26688 -16.81915 -15.79275 -15.61664 -15.47432 -15.05269 -14.86043 -14.75180 -14.54148 -14.14775 -13.84341 -13.54828 -13.52058 -13.10962 -12.72863 -12.71640 -12.48727 -12.46147 -12.35834 -12.26722 -11.95859 -11.84495 -11.53837 -11.34914 -11.31943 -10.94888 -10.66301 -10.61757 -9.64934 -8.76089 -8.26330 -5.62585 1.26895 1.35024 1.43345 1.73714 2.04812 2.41313 2.89163 3.03953 3.45163 3.56214 3.74177 3.76710 3.88145 4.02799 4.04663 4.16286 4.33107 4.35558 4.48660 4.52064 4.62403 4.69137 4.73842 4.76462 4.78425 4.84743 4.95648 5.01132 5.02188 5.07936 5.11665 5.16765 5.20210 5.24603 5.31941 5.42189 5.55202 5.88658 6.10107 6.68111 6.96029 7.32437 7.60880 8.00536 8.92826 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.008180 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.067946 B = 3422.305330 C = 4695.306121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.046 0.954 5 C -0.010 4.010 6 N -0.945 5.945 7 Si 0.935 3.065 8 H -0.266 1.266 9 H -0.316 1.316 10 H -0.265 1.265 11 C 0.124 3.876 12 C 0.123 3.877 13 H 0.023 0.977 14 C -0.111 4.111 15 C -0.121 4.121 16 C 0.094 3.906 17 N -0.621 5.621 18 C 0.500 3.500 19 O -0.582 6.582 20 C -0.085 4.085 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.151 4.151 24 H 0.011 0.989 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.258 0.742 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -23.170 -6.968 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.346 5.346 3 C -0.391 4.391 4 H 0.064 0.936 5 C -0.207 4.207 6 N -0.589 5.589 7 Si 0.765 3.235 8 H -0.192 1.192 9 H -0.245 1.245 10 H -0.190 1.190 11 C -0.002 4.002 12 C 0.017 3.983 13 H 0.041 0.959 14 C -0.149 4.149 15 C -0.159 4.159 16 C -0.027 4.027 17 N -0.356 5.356 18 C 0.291 3.709 19 O -0.462 6.462 20 C -0.124 4.124 21 C -0.194 4.194 22 C -0.217 4.217 23 C -0.188 4.188 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.629 -22.586 -6.669 23.697 hybrid contribution 0.772 0.909 0.980 1.543 sum -1.857 -21.678 -5.689 22.489 Atomic orbital electron populations 1.21321 0.81661 1.00903 0.98459 1.44077 1.02523 1.00944 1.87061 1.18655 1.05615 0.91461 1.23358 0.93643 1.25950 0.97009 0.97830 0.99890 1.69968 1.09609 1.37890 1.41480 0.85950 0.77918 0.79607 0.79990 1.19229 1.24538 1.19004 1.21544 0.95784 0.87388 0.95434 1.22056 0.91671 0.86956 0.97636 0.95904 1.22605 0.94318 0.99157 0.98834 1.22818 0.99579 0.96257 0.97237 1.22685 0.95106 0.88851 0.96042 1.48852 1.14402 1.13903 1.58461 1.21337 0.80579 0.92105 0.76923 1.90827 1.67255 1.40117 1.47981 1.21187 0.93996 0.92894 1.04368 1.22001 0.91982 1.01422 1.03978 1.23113 0.98004 1.03309 0.97277 1.23082 1.01643 0.93832 1.00221 0.97073 0.93895 0.91059 0.93328 0.92167 0.94667 0.91036 0.89386 0.90988 0.86263 0.87936 0.89224 0.86164 0.85978 0.91080 0.87040 0.89828 0.88562 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.68 10.45 127.77 1.34 6.01 16 2 N -0.62 -31.06 2.40 -726.92 -1.75 -32.81 16 3 C -0.26 -16.05 9.91 84.03 0.83 -15.22 16 4 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 5 C -0.01 -0.64 5.33 84.86 0.45 -0.19 16 6 N -0.95 -65.46 13.97 21.65 0.30 -65.16 16 7 Si 0.94 53.50 24.95 68.60 1.71 55.21 16 8 H -0.27 -15.58 5.50 99.48 0.55 -15.04 16 9 H -0.32 -18.19 7.11 99.48 0.71 -17.48 16 10 H -0.27 -14.28 7.11 99.48 0.71 -13.57 16 11 C 0.12 5.73 4.06 86.38 0.35 6.08 16 12 C 0.12 4.84 3.08 45.35 0.14 4.98 16 13 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 14 C -0.11 -2.98 5.44 31.79 0.17 -2.81 16 15 C -0.12 -2.10 7.09 31.98 0.23 -1.88 16 16 C 0.09 1.72 6.65 86.85 0.58 2.29 16 17 N -0.62 -20.19 3.06 -788.03 -2.41 -22.60 16 18 C 0.50 18.54 7.57 87.66 0.66 19.20 16 19 O -0.58 -29.95 13.58 -3.02 -0.04 -29.99 16 20 C -0.09 -2.03 5.06 29.85 0.15 -1.88 16 21 C -0.17 -4.78 5.41 -10.79 -0.06 -4.84 16 22 C -0.18 -3.97 10.18 30.60 0.31 -3.66 16 23 C -0.15 -2.78 10.25 30.60 0.31 -2.47 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.04 1.66 8.01 -2.38 -0.02 1.64 16 26 H 0.07 2.16 5.82 -2.38 -0.01 2.15 16 27 H 0.26 17.24 8.31 -92.71 -0.77 16.47 16 28 H 0.06 2.41 7.91 -2.39 -0.02 2.40 16 29 H 0.04 1.91 1.79 -2.38 0.00 1.90 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.10 6.30 -2.39 -0.02 2.09 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.26 7.52 -2.38 -0.02 1.24 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.12 2.06 7.52 -2.39 -0.02 2.04 16 38 H 0.07 2.63 7.31 -2.38 -0.02 2.62 16 39 H 0.11 1.99 8.03 -2.39 -0.02 1.97 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -87.82 326.15 4.11 -83.71 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.83 Total: 6.00 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.47 Total: 5.64 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -3.86 Total: -120.57 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.04 Total: -29.99 kcal Atomic # 14 Polarization: 53.50 SS G_CDS: 1.71 Total: 55.21 kcal Total: -87.82 4.11 -83.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755187409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.912 kcal (2) G-P(sol) polarization free energy of solvation -87.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds