Wall clock time and date at job start Mon Mar 30 2020 00:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00269 * 2 1 4 4 H 1.48500 * 109.47199 * 270.00463 * 3 2 1 5 5 H 1.48501 * 109.46706 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.46999 * 149.99806 * 3 2 1 7 7 C 1.37879 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99634 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00199 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47142 * 179.97438 * 9 7 2 11 11 H 1.08989 * 109.47273 * 54.99780 * 10 9 7 12 12 C 1.53001 * 109.47180 * 175.00367 * 10 9 7 13 13 C 1.52994 * 109.47027 * 240.83142 * 12 10 9 14 14 C 1.53007 * 109.47371 * 230.90807 * 13 12 10 15 15 C 1.53002 * 109.47066 * 127.62723 * 14 13 12 16 16 C 1.53000 * 109.46806 * 234.18812 * 15 14 13 17 17 C 1.52992 * 109.47234 * 126.98713 * 16 15 14 18 18 C 1.53003 * 109.47249 * 232.46010 * 17 16 15 19 19 C 1.52997 * 109.46994 * 125.45614 * 18 17 16 20 20 C 1.53009 * 109.46766 * 232.63394 * 19 18 17 21 21 C 1.52994 * 109.46983 * 130.51209 * 20 19 18 22 22 C 1.50699 * 109.47335 * 240.12162 * 21 20 19 23 23 O 1.20766 * 119.99491 * 305.55522 * 22 21 20 24 24 H 0.97003 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47198 * 59.99736 * 9 7 2 26 26 H 1.09000 * 109.47388 * 300.00037 * 9 7 2 27 27 H 1.09000 * 109.46951 * 0.83024 * 12 10 9 28 28 H 1.08995 * 109.47279 * 120.82955 * 12 10 9 29 29 H 1.09000 * 109.47095 * 350.90640 * 13 12 10 30 30 H 1.09000 * 109.47388 * 110.90537 * 13 12 10 31 31 H 1.08996 * 109.46691 * 7.63015 * 14 13 12 32 32 H 1.08996 * 109.46912 * 247.63203 * 14 13 12 33 33 H 1.09002 * 109.47097 * 114.18684 * 15 14 13 34 34 H 1.09001 * 109.47142 * 354.18719 * 15 14 13 35 35 H 1.09004 * 109.46934 * 246.98484 * 16 15 14 36 36 H 1.08997 * 109.47264 * 6.98351 * 16 15 14 37 37 H 1.09000 * 109.47633 * 352.45849 * 17 16 15 38 38 H 1.09007 * 109.47579 * 112.46062 * 17 16 15 39 39 H 1.09003 * 109.46664 * 245.45144 * 18 17 16 40 40 H 1.08994 * 109.47055 * 5.45318 * 18 17 16 41 41 H 1.09003 * 109.47327 * 352.63329 * 19 18 17 42 42 H 1.09001 * 109.47433 * 112.63893 * 19 18 17 43 43 H 1.08997 * 109.47058 * 250.51046 * 20 19 18 44 44 H 1.08997 * 109.46575 * 10.51118 * 20 19 18 45 45 H 1.09004 * 109.47093 * 0.11667 * 21 20 19 46 46 H 1.08995 * 109.47247 * 120.11870 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8424 12 6 5.5462 -2.6385 -0.1272 13 6 5.9513 -3.3787 -1.4034 14 6 7.0089 -4.4324 -1.0681 15 6 6.5689 -5.7900 -1.6195 16 6 6.5777 -6.8251 -0.4928 17 6 5.2177 -7.5231 -0.4309 18 6 4.6714 -7.4503 0.9964 19 6 3.2732 -6.8295 0.9763 20 6 3.2196 -5.6614 1.9632 21 6 2.6212 -4.4356 1.2705 22 6 3.6232 -3.3101 1.2870 23 8 4.1068 -2.9476 2.3326 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 5.9083 -1.6114 -0.1724 28 1 5.9817 -3.1395 0.7372 29 1 5.0766 -3.8661 -1.8339 30 1 6.3613 -2.6681 -2.1211 31 1 7.1244 -4.4997 0.0137 32 1 7.9602 -4.1483 -1.5180 33 1 7.2561 -6.1029 -2.4057 34 1 5.5621 -5.7070 -2.0288 35 1 7.3566 -7.5634 -0.6837 36 1 6.7740 -6.3271 0.4567 37 1 4.5241 -7.0286 -1.1110 38 1 5.3313 -8.5670 -0.7236 39 1 4.6170 -8.4547 1.4162 40 1 5.3328 -6.8363 1.6076 41 1 3.0508 -6.4675 -0.0275 42 1 2.5377 -7.5812 1.2628 43 1 2.5996 -5.9352 2.8168 44 1 4.2278 -5.4290 2.3061 45 1 2.3732 -4.6860 0.2390 46 1 1.7181 -4.1258 1.7963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002556214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:46 Heat of formation + Delta-G solvation = -83.453228 kcal Electronic energy + Delta-G solvation = -21672.552622 eV Core-core repulsion = 18753.489144 eV Total energy + Delta-G solvation = -2919.063478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33252 -37.26404 -36.03459 -34.27429 -32.87382 -31.59772 -30.22550 -27.92549 -25.52451 -24.86404 -22.05086 -21.42660 -21.00710 -20.77697 -20.42926 -18.42684 -16.74143 -16.15040 -15.50568 -15.20920 -14.87960 -14.41767 -14.05940 -13.66656 -13.38878 -13.23547 -13.12317 -12.89278 -12.82111 -12.33132 -12.10331 -11.58531 -11.42497 -11.32383 -11.27893 -11.13725 -11.09729 -10.98645 -10.95097 -10.88733 -10.61157 -10.47361 -10.16139 -10.04631 -9.95005 -9.77185 -9.44490 -9.21750 -8.63608 -8.48376 -6.08150 -4.06909 2.80431 3.29891 3.37806 3.43135 4.40439 4.43621 4.77502 4.78284 4.81724 4.95931 5.03758 5.10468 5.25927 5.27928 5.34532 5.49282 5.58678 5.62162 5.67457 5.67891 5.80586 5.88304 5.93287 5.99869 6.02232 6.08645 6.11320 6.16049 6.21571 6.25815 6.30618 6.34604 6.35961 6.37622 6.43039 6.48485 6.52046 6.60232 6.67193 6.76050 7.11355 7.34840 7.72297 8.34026 8.45936 8.94011 9.54557 11.04734 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.005795 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.328155 B = 4830.365531 C = 5606.069445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.121 4.121 11 H 0.085 0.915 12 C -0.112 4.112 13 C -0.122 4.122 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.169 4.169 22 C 0.392 3.608 23 O -0.476 6.476 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 -14.275 -2.105 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.039 4.039 10 C -0.141 4.141 11 H 0.103 0.897 12 C -0.149 4.149 13 C -0.159 4.159 14 C -0.161 4.161 15 C -0.161 4.161 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.207 4.207 22 C 0.269 3.731 23 O -0.351 6.351 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.634 -13.968 -1.550 18.244 hybrid contribution 0.130 0.986 -0.122 1.002 sum 11.764 -12.982 -1.672 17.599 Atomic orbital electron populations 1.69901 1.06262 1.26963 1.50715 1.24981 0.94702 0.99134 0.94284 0.86832 0.80622 0.83745 0.78535 1.20180 1.21304 1.18888 1.21146 0.89243 0.94648 1.51436 0.90733 1.19649 0.97356 0.89731 0.97178 1.21916 0.94883 1.00563 0.96704 0.89708 1.21856 0.94949 1.01002 0.97112 1.22026 0.98657 0.97596 0.97658 1.22033 0.98357 0.94658 1.01024 1.22032 1.01759 0.94787 0.97489 1.22030 0.96935 0.97951 0.99159 1.22032 0.96833 1.00220 0.97000 1.22023 0.96731 1.00616 0.96741 1.22056 0.96602 0.97435 1.00009 1.21690 1.01612 0.93623 0.97944 1.22334 0.99967 0.95351 1.03058 1.24400 0.77983 0.80708 0.90046 1.90282 1.50110 1.60069 1.34661 0.92688 0.95869 0.95997 0.91692 0.91996 0.91178 0.92323 0.91587 0.92682 0.92697 0.91198 0.92730 0.91459 0.91179 0.92663 0.92604 0.91480 0.91057 0.92259 0.91854 0.91444 0.89562 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.53 -14.61 9.16 -34.44 -0.32 -14.93 16 8 H 0.07 2.15 7.75 -52.49 -0.41 1.75 16 9 C 0.00 -0.04 3.19 -27.89 -0.09 -0.13 16 10 C -0.12 -2.35 2.31 -91.77 -0.21 -2.56 16 11 H 0.08 1.54 6.52 -51.94 -0.34 1.20 16 12 C -0.11 -1.82 5.52 -26.73 -0.15 -1.97 16 13 C -0.12 -1.61 5.95 -26.73 -0.16 -1.77 16 14 C -0.12 -1.39 5.97 -26.73 -0.16 -1.55 16 15 C -0.12 -1.24 5.97 -26.73 -0.16 -1.40 16 16 C -0.12 -1.19 5.96 -26.74 -0.16 -1.35 16 17 C -0.12 -1.18 5.97 -26.73 -0.16 -1.34 16 18 C -0.12 -1.25 5.97 -26.73 -0.16 -1.41 16 19 C -0.12 -1.38 5.94 -26.73 -0.16 -1.54 16 20 C -0.11 -1.52 5.86 -26.73 -0.16 -1.67 16 21 C -0.17 -2.82 5.95 -27.89 -0.17 -2.98 16 22 C 0.39 7.73 4.41 -29.03 -0.13 7.60 16 23 O -0.48 -10.67 16.73 5.99 0.10 -10.57 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.59 7.17 -51.93 -0.37 0.22 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.06 1.09 7.59 -51.93 -0.39 0.70 16 28 H 0.06 1.01 6.12 -51.93 -0.32 0.69 16 29 H 0.07 0.92 5.77 -51.93 -0.30 0.62 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.78 5.75 -51.93 -0.30 0.48 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.73 5.74 -51.93 -0.30 0.43 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.70 5.74 -51.93 -0.30 0.40 16 37 H 0.07 0.69 5.74 -51.93 -0.30 0.40 16 38 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.73 5.75 -51.93 -0.30 0.43 16 41 H 0.07 0.81 5.79 -51.93 -0.30 0.50 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 45 H 0.09 1.32 6.53 -51.93 -0.34 0.98 16 46 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -30.60 339.76 -9.05 -39.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.94 Total: 0.27 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -2.43 Total: -25.04 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.10 Total: -10.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.60 -9.05 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002556214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.805 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds