Wall clock time and date at job start Mon Mar 30 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00269 * 2 1 4 4 H 1.48500 * 109.47199 * 270.00463 * 3 2 1 5 5 H 1.48501 * 109.46706 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.46999 * 149.99806 * 3 2 1 7 7 C 1.37879 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99634 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00199 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47142 * 179.97438 * 9 7 2 11 11 H 1.08989 * 109.47273 * 54.99780 * 10 9 7 12 12 C 1.53001 * 109.47180 * 175.00367 * 10 9 7 13 13 C 1.52994 * 109.47027 * 240.83142 * 12 10 9 14 14 C 1.53007 * 109.47371 * 230.90807 * 13 12 10 15 15 C 1.53002 * 109.47066 * 127.62723 * 14 13 12 16 16 C 1.53000 * 109.46806 * 234.18812 * 15 14 13 17 17 C 1.52992 * 109.47234 * 126.98713 * 16 15 14 18 18 C 1.53003 * 109.47249 * 232.46010 * 17 16 15 19 19 C 1.52997 * 109.46994 * 125.45614 * 18 17 16 20 20 C 1.53009 * 109.46766 * 232.63394 * 19 18 17 21 21 C 1.52994 * 109.46983 * 130.51209 * 20 19 18 22 22 C 1.50699 * 109.47335 * 240.12162 * 21 20 19 23 23 O 1.20766 * 119.99491 * 305.55522 * 22 21 20 24 24 H 0.97003 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47198 * 59.99736 * 9 7 2 26 26 H 1.09000 * 109.47388 * 300.00037 * 9 7 2 27 27 H 1.09000 * 109.46951 * 0.83024 * 12 10 9 28 28 H 1.08995 * 109.47279 * 120.82955 * 12 10 9 29 29 H 1.09000 * 109.47095 * 350.90640 * 13 12 10 30 30 H 1.09000 * 109.47388 * 110.90537 * 13 12 10 31 31 H 1.08996 * 109.46691 * 7.63015 * 14 13 12 32 32 H 1.08996 * 109.46912 * 247.63203 * 14 13 12 33 33 H 1.09002 * 109.47097 * 114.18684 * 15 14 13 34 34 H 1.09001 * 109.47142 * 354.18719 * 15 14 13 35 35 H 1.09004 * 109.46934 * 246.98484 * 16 15 14 36 36 H 1.08997 * 109.47264 * 6.98351 * 16 15 14 37 37 H 1.09000 * 109.47633 * 352.45849 * 17 16 15 38 38 H 1.09007 * 109.47579 * 112.46062 * 17 16 15 39 39 H 1.09003 * 109.46664 * 245.45144 * 18 17 16 40 40 H 1.08994 * 109.47055 * 5.45318 * 18 17 16 41 41 H 1.09003 * 109.47327 * 352.63329 * 19 18 17 42 42 H 1.09001 * 109.47433 * 112.63893 * 19 18 17 43 43 H 1.08997 * 109.47058 * 250.51046 * 20 19 18 44 44 H 1.08997 * 109.46575 * 10.51118 * 20 19 18 45 45 H 1.09004 * 109.47093 * 0.11667 * 21 20 19 46 46 H 1.08995 * 109.47247 * 120.11870 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8424 12 6 5.5462 -2.6385 -0.1272 13 6 5.9513 -3.3787 -1.4034 14 6 7.0089 -4.4324 -1.0681 15 6 6.5689 -5.7900 -1.6195 16 6 6.5777 -6.8251 -0.4928 17 6 5.2177 -7.5231 -0.4309 18 6 4.6714 -7.4503 0.9964 19 6 3.2732 -6.8295 0.9763 20 6 3.2196 -5.6614 1.9632 21 6 2.6212 -4.4356 1.2705 22 6 3.6232 -3.3101 1.2870 23 8 4.1068 -2.9476 2.3326 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 5.9083 -1.6114 -0.1724 28 1 5.9817 -3.1395 0.7372 29 1 5.0766 -3.8661 -1.8339 30 1 6.3613 -2.6681 -2.1211 31 1 7.1244 -4.4997 0.0137 32 1 7.9602 -4.1483 -1.5180 33 1 7.2561 -6.1029 -2.4057 34 1 5.5621 -5.7070 -2.0288 35 1 7.3566 -7.5634 -0.6837 36 1 6.7740 -6.3271 0.4567 37 1 4.5241 -7.0286 -1.1110 38 1 5.3313 -8.5670 -0.7236 39 1 4.6170 -8.4547 1.4162 40 1 5.3328 -6.8363 1.6076 41 1 3.0508 -6.4675 -0.0275 42 1 2.5377 -7.5812 1.2628 43 1 2.5996 -5.9352 2.8168 44 1 4.2278 -5.4290 2.3061 45 1 2.3732 -4.6860 0.2390 46 1 1.7181 -4.1258 1.7963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002556214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:45 Heat of formation + Delta-G solvation = -98.356971 kcal Electronic energy + Delta-G solvation = -21673.198896 eV Core-core repulsion = 18753.489144 eV Total energy + Delta-G solvation = -2919.709752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88784 -38.20831 -37.20014 -35.77614 -34.62002 -33.04836 -31.46493 -29.49010 -26.81569 -26.06876 -23.78900 -22.36948 -22.06526 -21.77147 -21.54569 -20.02305 -18.88871 -17.17329 -16.96562 -16.49355 -16.28808 -15.82579 -15.68067 -14.74360 -14.59010 -14.56788 -14.40084 -14.23154 -13.99265 -13.87022 -13.60195 -13.27300 -12.75369 -12.55995 -12.49694 -12.36644 -12.31356 -12.15430 -12.07310 -11.89781 -11.87961 -11.81344 -11.72023 -11.33786 -11.23621 -10.99612 -10.81945 -10.79336 -10.75103 -10.11409 -8.30750 -6.33664 1.18761 1.31705 1.35317 1.45429 2.33711 3.04847 3.16399 3.72338 3.82735 3.93971 3.97048 4.01425 4.04597 4.18045 4.26442 4.40179 4.48341 4.58897 4.63501 4.65013 4.76200 4.80459 4.85269 4.89876 4.98385 5.00749 5.05247 5.10191 5.15225 5.18546 5.21739 5.25290 5.32273 5.34029 5.35497 5.42444 5.47906 5.49216 5.53518 5.57339 5.59264 5.61341 5.63464 6.23424 6.72514 6.74994 7.31111 8.84794 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.005795 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.328155 B = 4830.365531 C = 5606.069445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.001 3.999 10 C -0.120 4.120 11 H 0.097 0.903 12 C -0.106 4.106 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.167 4.167 22 C 0.387 3.613 23 O -0.508 6.508 24 H 0.266 0.734 25 H 0.005 0.995 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.189 -15.310 -3.198 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.759 3.241 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.036 4.036 10 C -0.140 4.140 11 H 0.115 0.885 12 C -0.143 4.143 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.205 4.205 22 C 0.266 3.734 23 O -0.385 6.385 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.299 -15.017 -2.659 20.235 hybrid contribution -0.432 1.274 0.248 1.368 sum 12.866 -13.743 -2.411 18.980 Atomic orbital electron populations 1.70030 1.07900 1.27971 1.52469 1.25840 0.95495 1.02931 0.94271 0.85873 0.79353 0.79400 0.79429 1.18360 1.21125 1.18305 1.21472 0.91318 0.93744 1.50209 0.93115 1.19566 0.94752 0.92668 0.96621 1.21923 0.97141 0.97862 0.97026 0.88516 1.21817 0.92419 1.01232 0.98877 1.21997 0.99426 0.98054 0.95982 1.21989 0.98255 0.94780 1.00694 1.22014 1.01880 0.94109 0.97878 1.22011 0.97408 0.98073 0.98496 1.22020 0.96587 1.00991 0.96349 1.21994 0.95695 1.00986 0.97231 1.22031 0.97871 0.96643 0.99113 1.21671 1.00761 0.93172 0.98604 1.22367 0.98448 0.95600 1.04100 1.24868 0.77817 0.81043 0.89674 1.90264 1.51377 1.61235 1.35630 0.92551 0.97697 0.94857 0.92295 0.92250 0.90987 0.91429 0.92412 0.91457 0.91407 0.91501 0.91564 0.92482 0.91517 0.91372 0.91309 0.92485 0.91034 0.90877 0.91269 0.92412 0.88273 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.01 0.71 5.47 84.66 0.46 1.18 16 3 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 7 C -0.53 -29.77 9.16 25.60 0.23 -29.53 16 8 H 0.05 3.01 7.75 -2.91 -0.02 2.99 16 9 C 0.00 0.06 3.19 29.85 0.10 0.16 16 10 C -0.12 -4.61 2.31 -11.54 -0.03 -4.64 16 11 H 0.10 3.44 6.52 -2.39 -0.02 3.43 16 12 C -0.11 -3.35 5.52 30.59 0.17 -3.18 16 13 C -0.12 -2.85 5.95 30.59 0.18 -2.67 16 14 C -0.12 -2.43 5.97 30.60 0.18 -2.24 16 15 C -0.12 -2.13 5.97 30.60 0.18 -1.94 16 16 C -0.12 -2.07 5.96 30.59 0.18 -1.89 16 17 C -0.12 -2.02 5.97 30.59 0.18 -1.84 16 18 C -0.12 -2.21 5.97 30.59 0.18 -2.03 16 19 C -0.12 -2.45 5.94 30.60 0.18 -2.27 16 20 C -0.10 -2.79 5.86 30.60 0.18 -2.61 16 21 C -0.17 -5.60 5.95 29.85 0.18 -5.43 16 22 C 0.39 15.43 4.41 29.10 0.13 15.56 16 23 O -0.51 -23.19 16.73 -1.47 -0.02 -23.21 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.00 0.24 7.17 -2.39 -0.02 0.22 16 26 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 27 H 0.06 1.92 7.59 -2.39 -0.02 1.91 16 28 H 0.06 1.91 6.12 -2.39 -0.01 1.89 16 29 H 0.07 1.73 5.77 -2.39 -0.01 1.72 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.28 5.75 -2.39 -0.01 1.27 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.22 5.74 -2.39 -0.01 1.21 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.09 5.74 -2.39 -0.01 1.08 16 37 H 0.07 1.16 5.74 -2.39 -0.01 1.15 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.17 5.75 -2.39 -0.01 1.15 16 41 H 0.07 1.48 5.79 -2.39 -0.01 1.47 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.66 6.16 -2.39 -0.01 1.65 16 45 H 0.10 3.00 6.53 -2.39 -0.02 2.98 16 46 H 0.08 2.90 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -66.08 339.76 5.74 -60.33 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.89 Total: 17.59 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 2.70 Total: -43.38 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.30 Total: -58.16 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.02 Total: -23.21 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -66.08 5.74 -60.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002556214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.022 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds