Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46839 * 111.00222 * 294.21135 * 11 10 9 13 13 C 1.53034 * 109.52552 * 174.16216 * 12 11 10 14 14 C 1.53123 * 109.28182 * 59.17780 * 13 12 11 15 15 N 1.46887 * 109.52760 * 182.44295 * 14 13 12 16 16 C 1.46851 * 111.00168 * 58.89286 * 15 14 13 17 17 C 1.53038 * 109.52494 * 174.16188 * 16 15 14 18 18 C 1.53121 * 109.27708 * 59.18011 * 17 16 15 19 19 C 1.53118 * 109.15903 * 302.34399 * 18 17 16 20 20 C 1.46849 * 111.00264 * 294.68293 * 15 14 13 21 21 C 1.53120 * 109.16070 * 302.35293 * 14 13 12 22 22 C 1.46849 * 110.99649 * 169.99929 * 11 10 9 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.09006 * 109.46266 * 294.17473 * 12 11 10 29 29 H 1.09002 * 109.46276 * 54.14664 * 12 11 10 30 30 H 1.09006 * 109.50444 * 299.24199 * 13 12 11 31 31 H 1.09003 * 109.50687 * 179.12283 * 13 12 11 32 32 H 1.09005 * 109.51783 * 62.25186 * 14 13 12 33 33 H 1.09003 * 109.46137 * 294.17814 * 16 15 14 34 34 H 1.09001 * 109.46191 * 54.14468 * 16 15 14 35 35 H 1.09001 * 109.50438 * 299.24098 * 17 16 15 36 36 H 1.09000 * 109.50206 * 179.12142 * 17 16 15 37 37 H 1.09008 * 109.52012 * 182.44142 * 18 17 16 38 38 H 1.08992 * 109.52416 * 62.25535 * 18 17 16 39 39 H 1.08997 * 109.50593 * 297.71024 * 19 18 17 40 40 H 1.09007 * 109.50128 * 177.60013 * 19 18 17 41 41 H 1.08994 * 109.46243 * 305.85972 * 20 15 14 42 42 H 1.09005 * 109.45852 * 65.82093 * 20 15 14 43 43 H 1.09005 * 109.50142 * 297.71204 * 21 14 13 44 44 H 1.08998 * 109.50777 * 177.59101 * 21 14 13 45 45 H 1.08991 * 109.46839 * 305.85721 * 22 11 10 46 46 H 1.09001 * 109.46094 * 65.83266 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.7612 -5.1086 1.2517 13 6 -0.1030 -6.3680 1.1587 14 6 0.7968 -7.5813 0.9078 15 7 -0.0320 -8.7849 0.7593 16 6 -0.9798 -8.6374 -0.3526 17 6 -1.7226 -9.9577 -0.5702 18 6 -2.4673 -10.3361 0.7131 19 6 -1.4641 -10.4360 1.8655 20 6 -0.7289 -9.1020 2.0125 21 6 1.6021 -7.3532 -0.3744 22 6 2.4169 -6.0651 -0.2369 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 1.4595 -5.2079 2.0829 29 1 0.1222 -4.2409 1.4161 30 1 -0.8109 -6.2638 0.3363 31 1 -0.6475 -6.5057 2.0929 32 1 1.4788 -7.7090 1.7485 33 1 -1.6974 -7.8517 -0.1164 34 1 -0.4369 -8.3724 -1.2599 35 1 -1.0069 -10.7410 -0.8200 36 1 -2.4370 -9.8433 -1.3853 37 1 -2.9625 -11.2976 0.5768 38 1 -3.2102 -9.5721 0.9419 39 1 -0.7445 -11.2268 1.6540 40 1 -1.9940 -10.6634 2.7906 41 1 -0.0038 -9.1742 2.8230 42 1 -1.4477 -8.3140 2.2376 43 1 0.9211 -7.2643 -1.2209 44 1 2.2760 -8.1946 -0.5355 45 1 2.9804 -5.8923 -1.1537 46 1 3.1073 -6.1599 0.6012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040444275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = -32.307453 kcal Electronic energy + Delta-G solvation = -21113.165954 eV Core-core repulsion = 18228.613075 eV Total energy + Delta-G solvation = -2884.552879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99804 -38.96877 -36.02493 -34.82826 -32.61397 -31.94426 -31.56357 -30.20345 -26.74759 -25.32416 -24.52506 -23.91082 -23.16641 -21.77311 -20.95920 -19.80475 -18.61442 -17.41151 -16.58181 -16.38286 -16.19055 -15.85875 -15.43628 -15.27239 -14.99421 -14.78631 -14.57474 -14.42186 -14.02713 -13.92851 -13.78832 -13.18299 -13.05408 -12.87182 -12.79488 -12.50055 -12.40653 -12.16475 -12.00975 -11.97433 -11.65125 -11.55715 -11.49091 -11.26083 -11.22222 -11.15490 -10.93485 -10.55029 -9.20701 -9.13672 -8.21237 -6.32841 1.39123 1.40951 1.51885 2.39209 2.90550 3.07884 3.11994 3.76553 3.82046 3.93325 4.02704 4.10064 4.12246 4.23180 4.33199 4.37626 4.48734 4.49508 4.52150 4.58358 4.60845 4.72177 4.75453 4.77177 4.87496 4.92651 4.97019 4.97889 5.05932 5.09455 5.12193 5.13561 5.18566 5.25963 5.34359 5.38146 5.45161 5.51763 5.65457 5.77427 6.08838 6.15921 6.22754 6.33530 6.35084 6.84390 7.36326 8.90945 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038791 B = 0.003475 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.635844 B = 8056.610711 C = 8307.769710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.550 5.550 12 C 0.063 3.937 13 C -0.135 4.135 14 C 0.092 3.908 15 N -0.528 5.528 16 C 0.046 3.954 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.111 4.111 20 C 0.049 3.951 21 C -0.097 4.097 22 C 0.055 3.945 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.008 1.008 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -22.226 2.384 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.048 4.048 11 N -0.276 5.276 12 C -0.066 4.066 13 C -0.174 4.174 14 C -0.017 4.017 15 N -0.251 5.251 16 C -0.081 4.081 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.149 4.149 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.073 4.073 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.011 0.989 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.340 -22.535 1.896 22.654 hybrid contribution 0.103 2.080 0.861 2.253 sum -1.236 -20.455 2.757 20.677 Atomic orbital electron populations 1.70113 1.07864 1.27779 1.51448 1.25984 0.95763 1.03392 0.94603 0.85416 0.78621 0.78246 0.78562 1.19668 1.20704 1.18684 1.21637 0.93540 0.92285 1.50903 0.92140 1.18914 0.94193 0.92050 0.94857 1.21956 0.95331 0.88472 0.99030 1.61939 1.28174 1.02369 1.35071 1.21938 0.96553 0.98092 0.90027 1.22165 0.98736 0.94878 1.01654 1.21694 0.94375 0.86931 0.98677 1.62237 1.23509 1.34190 1.05193 1.22209 0.94019 0.97267 0.94629 1.21574 0.98931 0.96585 0.97959 1.21591 0.97616 1.01757 0.94944 1.21559 0.97946 0.96493 0.98899 1.22170 0.96905 0.97199 0.91629 1.21587 0.98790 0.95983 0.97170 1.22139 0.93927 0.90356 1.00841 0.92762 0.99162 0.98938 0.91650 0.96320 0.95266 0.93087 0.92190 0.91261 0.90094 0.95840 0.90698 0.91081 0.90986 0.90608 0.92911 0.91128 0.90514 0.90573 0.95507 0.91643 0.89341 0.90338 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.05 4.90 29.85 0.15 2.20 16 10 C 0.08 3.48 4.90 86.30 0.42 3.90 16 11 N -0.55 -20.52 4.66 -896.37 -4.17 -24.70 16 12 C 0.06 2.22 5.29 86.33 0.46 2.67 16 13 C -0.13 -3.84 4.69 30.65 0.14 -3.70 16 14 C 0.09 2.20 2.30 45.00 0.10 2.30 16 15 N -0.53 -11.25 4.64 -870.66 -4.04 -15.29 16 16 C 0.05 0.98 4.63 86.33 0.40 1.39 16 17 C -0.11 -1.89 6.09 30.65 0.19 -1.70 16 18 C -0.12 -1.84 6.00 30.67 0.18 -1.66 16 19 C -0.11 -1.69 6.09 30.64 0.19 -1.50 16 20 C 0.05 0.92 5.03 86.32 0.43 1.36 16 21 C -0.10 -2.36 5.24 30.65 0.16 -2.20 16 22 C 0.06 1.60 5.46 86.33 0.47 2.07 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.45 6.43 -2.39 -0.02 -0.47 16 26 H 0.07 2.77 7.99 -2.39 -0.02 2.76 16 27 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.05 2.14 6.21 -2.39 -0.01 2.12 16 30 H 0.06 1.87 6.40 -2.38 -0.02 1.86 16 31 H 0.07 1.83 6.79 -2.39 -0.02 1.81 16 32 H 0.08 1.90 8.08 -2.38 -0.02 1.89 16 33 H 0.02 0.57 6.57 -2.39 -0.02 0.55 16 34 H 0.07 1.66 5.99 -2.39 -0.01 1.64 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 42 H 0.03 0.56 6.80 -2.38 -0.02 0.54 16 43 H 0.06 1.70 6.19 -2.38 -0.01 1.68 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.08 2.18 8.02 -2.39 -0.02 2.16 16 46 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.34 337.77 -1.00 -65.34 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.91 Total: 11.30 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.99 Total: -25.92 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -7.93 Total: -97.57 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.34 -1.00 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040444275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.034 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds