Wall clock time and date at job start Mon Mar 30 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99927 * 3 2 1 5 5 H 1.48501 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47242 * 119.99663 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 197.35803 * 7 2 1 9 9 N 1.36941 * 119.99743 * 17.36296 * 7 2 1 10 10 C 1.46926 * 120.63170 * 27.67008 * 9 7 2 11 11 C 1.53194 * 108.77264 * 126.41601 * 10 9 7 12 12 C 1.53037 * 109.31546 * 54.63474 * 11 10 9 13 13 C 1.53003 * 109.46271 * 178.61396 * 12 11 10 14 14 N 1.46900 * 109.46809 * 295.07044 * 13 12 11 15 15 C 1.47999 * 111.00139 * 298.71643 * 14 13 12 16 16 C 1.50443 * 112.82860 * 191.34765 * 15 14 13 17 17 C 1.54310 * 108.49735 * 93.72665 * 16 15 14 18 18 C 1.45880 * 112.18889 * 281.46302 * 17 16 15 19 19 C 1.54310 * 112.18209 * 61.12096 * 18 17 16 20 20 C 1.47999 * 110.99794 * 169.99891 * 14 13 12 21 21 C 1.53039 * 109.53825 * 298.63656 * 12 11 10 22 22 C 1.46930 * 120.62921 * 207.69585 * 9 7 2 23 23 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.58752 * 246.19919 * 10 9 7 25 25 H 1.08998 * 109.58713 * 6.63208 * 10 9 7 26 26 H 1.09001 * 109.49473 * 174.58845 * 11 10 9 27 27 H 1.09007 * 109.49602 * 294.68211 * 11 10 9 28 28 H 1.09001 * 109.45836 * 58.65294 * 12 11 10 29 29 H 1.09005 * 109.46921 * 55.06407 * 13 12 11 30 30 H 1.08999 * 109.47418 * 175.07050 * 13 12 11 31 31 H 1.09005 * 108.81229 * 312.21501 * 15 14 13 32 32 H 1.08999 * 108.81414 * 70.48348 * 15 14 13 33 33 H 1.08993 * 109.63291 * 334.02943 * 16 15 14 34 34 H 1.08997 * 109.63226 * 213.42734 * 16 15 14 35 35 H 1.09004 * 108.94075 * 160.76696 * 17 16 15 36 36 H 1.09002 * 108.87412 * 42.11837 * 17 16 15 37 37 H 1.09000 * 108.93731 * 300.42840 * 18 17 16 38 38 H 1.09005 * 108.93991 * 181.82312 * 18 17 16 39 39 H 1.08998 * 109.62989 * 161.76322 * 19 18 17 40 40 H 1.08999 * 109.63131 * 41.17083 * 19 18 17 41 41 H 1.09004 * 108.81298 * 205.70088 * 20 14 13 42 42 H 1.09003 * 108.81381 * 324.07998 * 20 14 13 43 43 H 1.09001 * 109.49524 * 301.41138 * 21 12 11 44 44 H 1.08999 * 109.50028 * 181.31827 * 21 12 11 45 45 H 1.08999 * 109.58472 * 353.36739 * 22 9 7 46 46 H 1.08994 * 109.58704 * 113.79422 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3722 -2.3612 -0.3529 10 6 0.2276 -2.3349 -1.2737 11 6 0.5005 -3.3055 -2.4271 12 6 0.8182 -4.6904 -1.8588 13 6 1.0573 -5.6708 -3.0088 14 7 -0.1847 -5.8390 -3.7751 15 6 -1.2605 -6.3970 -2.9256 16 6 -2.4599 -6.8397 -3.7185 17 6 -2.3109 -8.3429 -4.0335 18 6 -1.3905 -8.5855 -5.1390 19 6 0.0343 -8.0784 -4.8328 20 6 0.0624 -6.5870 -5.0280 21 6 2.0739 -4.6104 -0.9876 22 6 1.8189 -3.6546 0.1821 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6745 -2.6410 -0.7442 25 1 0.0985 -1.3267 -1.6674 26 1 -0.3804 -3.3678 -3.0662 27 1 1.3492 -2.9481 -3.0104 28 1 -0.0209 -5.0366 -1.2553 29 1 1.8375 -5.2807 -3.6625 30 1 1.3691 -6.6345 -2.6060 31 1 -0.8669 -7.2524 -2.3765 32 1 -1.5734 -5.6367 -2.2100 33 1 -2.5130 -6.2741 -4.6487 34 1 -3.3657 -6.6759 -3.1347 35 1 -3.2890 -8.7489 -4.2920 36 1 -1.9397 -8.8542 -3.1454 37 1 -1.7636 -8.0770 -6.0280 38 1 -1.3500 -9.6567 -5.3370 39 1 0.7447 -8.5501 -5.5117 40 1 0.2945 -8.3178 -3.8017 41 1 -0.7006 -6.3135 -5.7569 42 1 1.0394 -6.3037 -5.4197 43 1 2.9077 -4.2407 -1.5844 44 1 2.3130 -5.6015 -0.6021 45 1 2.7397 -3.5172 0.7490 46 1 1.0466 -4.0683 0.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045944265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:09 Heat of formation + Delta-G solvation = 6.702018 kcal Electronic energy + Delta-G solvation = -21569.330210 eV Core-core repulsion = 18686.468908 eV Total energy + Delta-G solvation = -2882.861302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52683 -37.48661 -34.81250 -32.81298 -32.15619 -30.55660 -29.64094 -27.53701 -25.37567 -24.89768 -23.38756 -21.93861 -21.03334 -20.56618 -19.41527 -18.80005 -16.67217 -16.24556 -15.69607 -14.83748 -14.60542 -14.33786 -13.91342 -13.73164 -13.38437 -13.31667 -13.08937 -13.00570 -12.53847 -12.30757 -12.18499 -11.97506 -11.37253 -11.24852 -11.16518 -11.01077 -10.86232 -10.80607 -10.63442 -10.61676 -10.31762 -10.25656 -10.04505 -9.91015 -9.76202 -9.31787 -9.23351 -8.36193 -7.95660 -6.55333 -5.68905 -3.10439 3.43951 3.49437 3.51044 3.97310 4.52820 4.57780 4.62389 4.82367 5.03285 5.13608 5.31171 5.33227 5.39255 5.47369 5.49204 5.57070 5.60013 5.70599 5.75256 5.80027 5.88097 5.90757 5.95469 5.99788 6.04275 6.08133 6.17785 6.22492 6.25173 6.31469 6.37124 6.49438 6.68189 6.81537 6.89513 7.04497 7.07168 7.11125 7.31199 7.34894 7.57471 7.80690 7.89123 8.55788 9.32207 9.96466 10.53696 11.39169 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.004090 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.868460 B = 6843.783346 C = 7024.519548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.593 5.593 10 C 0.170 3.830 11 C -0.123 4.123 12 C -0.075 4.075 13 C 0.067 3.933 14 N -0.543 5.543 15 C 0.063 3.937 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.149 4.149 20 C 0.060 3.940 21 C -0.127 4.127 22 C 0.147 3.853 23 H 0.253 0.747 24 H 0.013 0.987 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -16.628 -9.513 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.045 3.955 11 C -0.162 4.162 12 C -0.094 4.094 13 C -0.061 4.061 14 N -0.268 5.268 15 C -0.064 4.064 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.188 4.188 20 C -0.068 4.068 21 C -0.167 4.167 22 C 0.021 3.979 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -2.763 -16.034 -9.631 18.907 hybrid contribution 0.722 -0.024 0.272 0.772 sum -2.041 -16.058 -9.359 18.698 Atomic orbital electron populations 1.70040 1.05232 1.25413 1.54073 1.25004 0.95239 0.98269 1.01169 0.86399 0.78927 0.83565 0.78057 1.21103 1.21675 1.20994 1.19152 0.92613 0.85065 1.41250 0.91923 1.44072 1.35951 1.01224 1.50350 1.20796 0.88231 0.98416 0.88097 1.22076 1.00443 0.94406 0.99300 1.21077 0.97817 0.95932 0.94606 1.22246 0.90741 0.97375 0.95700 1.61809 1.07479 1.51188 1.06287 1.21775 0.91312 0.98110 0.95219 1.21440 0.97805 0.95229 1.01385 1.20612 0.99356 0.96919 0.98980 1.20536 0.95190 1.00608 0.98942 1.21937 0.96920 0.98016 1.01952 1.21877 1.01577 0.90687 0.92676 1.22037 0.97364 0.98527 0.98801 1.20853 0.97250 0.87084 0.92737 0.93714 0.96914 0.89794 0.92333 0.93397 0.92109 0.91284 0.96003 0.95325 0.90494 0.90708 0.91221 0.92363 0.92453 0.92056 0.92705 0.91740 0.91866 0.91146 0.91684 0.92497 0.93741 0.93124 0.96834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 11.19 55.49 0.62 -26.27 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.26 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -15.41 2.99 -172.32 -0.52 -15.93 16 10 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 11 C -0.12 -2.47 5.26 -26.61 -0.14 -2.61 16 12 C -0.08 -1.30 1.97 -90.58 -0.18 -1.48 16 13 C 0.07 0.97 4.25 -3.82 -0.02 0.95 16 14 N -0.54 -7.26 4.14 -235.90 -0.98 -8.23 16 15 C 0.06 0.79 4.33 -4.50 -0.02 0.77 16 16 C -0.12 -1.27 5.63 -27.32 -0.15 -1.42 16 17 C -0.12 -1.10 5.30 -29.41 -0.16 -1.26 16 18 C -0.12 -1.00 5.30 -29.41 -0.16 -1.16 16 19 C -0.15 -1.44 5.60 -27.32 -0.15 -1.59 16 20 C 0.06 0.66 5.16 -4.50 -0.02 0.64 16 21 C -0.13 -2.29 5.36 -26.61 -0.14 -2.44 16 22 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 23 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 2.34 6.04 -51.93 -0.31 2.02 16 26 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.09 6.41 -51.93 -0.33 0.76 16 29 H 0.07 1.01 7.80 -51.93 -0.40 0.61 16 30 H 0.02 0.30 7.81 -51.93 -0.41 -0.10 16 31 H 0.03 0.36 6.44 -51.93 -0.33 0.03 16 32 H 0.08 1.10 6.79 -51.93 -0.35 0.75 16 33 H 0.07 0.82 7.08 -51.93 -0.37 0.46 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 37 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.68 6.74 -51.93 -0.35 0.33 16 41 H 0.07 0.76 6.59 -51.93 -0.34 0.42 16 42 H 0.06 0.71 7.64 -51.93 -0.40 0.32 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -29.47 333.18 -10.84 -40.31 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.55 Total: -2.54 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.41 Total: -9.50 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.87 Total: -50.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.47 -10.84 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045944265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds