Wall clock time and date at job start Mon Mar 30 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47400 * 270.00330 * 3 2 1 5 5 H 1.48494 * 109.47066 * 30.00689 * 3 2 1 6 6 H 1.48504 * 109.46678 * 150.00290 * 3 2 1 7 7 C 1.37877 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99627 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46950 * 111.00336 * 169.99546 * 10 9 7 12 12 C 1.53051 * 109.36807 * 183.19150 * 11 10 9 13 13 N 1.46959 * 109.35945 * 301.59962 * 12 11 10 14 14 C 1.46908 * 110.99898 * 183.18462 * 13 12 11 15 15 C 1.54242 * 108.89303 * 68.09190 * 14 13 12 16 16 C 1.50549 * 108.48440 * 159.17738 * 15 14 13 17 17 C 1.54069 * 112.41295 * 94.26434 * 16 15 14 18 18 C 1.54066 * 112.81898 * 318.28294 * 17 16 15 19 19 C 1.50476 * 112.49443 * 318.28272 * 18 17 16 20 20 C 1.45543 * 108.89544 * 305.30006 * 14 13 12 21 21 C 1.46959 * 110.88277 * 59.32266 * 13 12 11 22 22 C 1.46950 * 110.99858 * 293.79874 * 10 9 7 23 23 H 0.97001 * 119.99479 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47678 * 59.99527 * 9 7 2 25 25 H 1.09007 * 109.47058 * 299.99309 * 9 7 2 26 26 H 1.09006 * 109.48939 * 303.15307 * 11 10 9 27 27 H 1.09003 * 109.48975 * 63.22012 * 11 10 9 28 28 H 1.09005 * 109.48911 * 61.56157 * 12 11 10 29 29 H 1.08995 * 109.49401 * 181.63480 * 12 11 10 30 30 H 1.09000 * 108.87150 * 186.69548 * 14 13 12 31 31 H 1.09004 * 109.62750 * 278.97507 * 15 14 13 32 32 H 1.09003 * 109.62678 * 39.55069 * 15 14 13 33 33 H 1.09003 * 108.92343 * 333.51494 * 16 15 14 34 34 H 1.08993 * 108.92054 * 215.01430 * 16 15 14 35 35 H 1.09004 * 108.81632 * 197.42052 * 17 16 15 36 36 H 1.09003 * 108.81159 * 79.14429 * 17 16 15 37 37 H 1.08999 * 108.87627 * 197.51272 * 18 17 16 38 38 H 1.08992 * 108.79817 * 79.00818 * 18 17 16 39 39 H 1.09010 * 109.62659 * 334.44540 * 19 18 17 40 40 H 1.08997 * 109.78860 * 213.95895 * 19 18 17 41 41 H 1.08991 * 108.89674 * 303.44239 * 20 14 13 42 42 H 1.08998 * 108.89116 * 61.93533 * 20 14 13 43 43 H 1.08997 * 109.49074 * 180.71242 * 21 13 12 44 44 H 1.08992 * 109.48922 * 60.64140 * 21 13 12 45 45 H 1.08995 * 109.49048 * 296.77432 * 22 10 9 46 46 H 1.09006 * 109.49342 * 56.84314 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 1.5208 -4.8941 0.2345 12 6 2.5563 -6.0190 0.3052 13 7 3.3193 -6.0585 -0.9502 14 6 4.2739 -7.1751 -0.9512 15 6 3.4899 -8.5024 -1.0004 16 6 4.4088 -9.5809 -1.5093 17 6 5.0904 -10.3590 -0.3675 18 6 5.5654 -9.4449 0.7781 19 6 6.1978 -8.1748 0.2766 20 6 5.1178 -7.0748 0.2304 21 6 4.0041 -4.7800 -1.1874 22 6 2.9685 -3.6552 -1.2580 23 1 -0.4849 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 0.9733 -4.8443 1.1757 27 1 0.8252 -5.0909 -0.5813 28 1 3.2355 -5.8363 1.1379 29 1 2.0484 -6.9722 0.4521 30 1 4.9008 -7.1021 -1.8399 31 1 3.1405 -8.7586 -0.0002 32 1 2.6387 -8.4001 -1.6736 33 1 5.1776 -9.1250 -2.1332 34 1 3.8324 -10.2788 -2.1166 35 1 5.9507 -10.8933 -0.7707 36 1 4.3839 -11.0862 0.0330 37 1 6.2931 -9.9863 1.3826 38 1 4.7090 -9.1899 1.4021 39 1 6.5994 -8.3360 -0.7239 40 1 7.0005 -7.8719 0.9489 41 1 5.6060 -6.1003 0.2338 42 1 4.4919 -7.1570 1.1190 43 1 4.5516 -4.8298 -2.1285 44 1 4.6996 -4.5832 -0.3716 45 1 2.2894 -3.8379 -2.0907 46 1 3.4765 -2.7020 -1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049827891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:54 Heat of formation + Delta-G solvation = -3.970742 kcal Electronic energy + Delta-G solvation = -21453.776858 eV Core-core repulsion = 18570.452751 eV Total energy + Delta-G solvation = -2883.324107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13020 -37.64030 -34.94656 -32.58176 -32.22638 -30.73564 -30.36433 -27.44318 -25.17145 -24.91386 -23.53523 -22.82941 -21.62775 -20.34706 -19.34191 -18.62718 -16.42052 -16.28402 -15.49922 -14.98329 -14.68884 -14.45040 -14.28927 -14.17931 -13.80826 -13.60712 -13.25322 -13.09354 -12.79487 -12.30257 -12.22654 -11.97644 -11.62242 -11.39447 -11.10102 -10.93007 -10.85078 -10.80255 -10.67736 -10.63540 -10.53232 -10.43051 -10.30723 -10.22245 -9.99557 -9.63853 -9.13461 -8.41724 -7.97449 -7.17204 -6.00324 -4.01613 3.32969 3.39040 3.43382 4.12354 4.44346 4.48891 4.63405 4.76140 4.98147 5.01248 5.07049 5.12728 5.19677 5.34843 5.35741 5.43985 5.55008 5.60763 5.62174 5.68280 5.77387 5.83227 5.89288 5.92565 5.95311 6.03581 6.05582 6.07744 6.12535 6.14380 6.24345 6.29740 6.36957 6.39826 6.52384 6.67437 6.74547 7.26679 7.36958 7.41727 7.45612 7.83177 8.13092 8.25623 8.59400 9.06063 9.62496 11.10595 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.003813 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.043214 B = 7340.677653 C = 7585.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.058 3.942 13 N -0.535 5.535 14 C 0.088 3.912 15 C -0.106 4.106 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.154 4.154 21 C 0.055 3.945 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.040 0.960 45 H 0.027 0.973 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -19.187 -1.202 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.020 4.020 15 C -0.144 4.144 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.192 4.192 21 C -0.073 4.073 22 C -0.061 4.061 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.806 -19.040 -1.202 21.451 hybrid contribution 0.353 0.991 0.042 1.053 sum 10.159 -18.049 -1.161 20.744 Atomic orbital electron populations 1.69964 1.06062 1.26714 1.51113 1.24993 0.94857 0.99287 0.95507 0.86511 0.79805 0.83166 0.78015 1.20743 1.21277 1.19807 1.21159 0.93430 0.89989 1.49905 0.91962 1.19698 0.90076 0.87348 0.96054 1.62266 1.28099 1.02722 1.33229 1.22071 0.94865 0.90116 1.00256 1.22186 0.96013 0.98277 0.90552 1.62533 1.25514 1.03124 1.34765 1.20578 0.92468 0.91335 0.97615 1.21358 0.98266 0.93075 1.01678 1.21304 0.98763 0.97694 0.97671 1.21917 0.99718 0.97836 0.95893 1.21336 1.00256 0.96150 0.97838 1.21234 0.97531 0.94764 1.01437 1.21258 0.98150 0.99423 1.00408 1.22261 0.96209 0.88907 0.99875 1.21977 0.95453 0.97375 0.91248 0.92958 0.99123 0.95288 0.91266 0.95296 0.94070 0.91314 0.90946 0.91961 0.90914 0.92157 0.92360 0.92619 0.92522 0.92670 0.92093 0.91776 0.92217 0.91864 0.91471 0.91433 0.94217 0.95434 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.16 4.72 -4.98 -0.02 5.14 16 10 N -0.54 -11.95 4.70 -235.91 -1.11 -13.06 16 11 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 12 C 0.06 0.89 4.73 -3.77 -0.02 0.88 16 13 N -0.54 -7.99 4.62 -229.95 -1.06 -9.06 16 14 C 0.09 1.05 1.74 -70.57 -0.12 0.93 16 15 C -0.11 -1.11 4.29 -27.31 -0.12 -1.23 16 16 C -0.12 -1.02 5.32 -27.40 -0.15 -1.17 16 17 C -0.12 -0.93 5.85 -25.62 -0.15 -1.08 16 18 C -0.12 -1.01 5.32 -27.44 -0.15 -1.16 16 19 C -0.11 -1.03 5.61 -27.34 -0.15 -1.19 16 20 C -0.15 -1.74 3.88 -29.60 -0.11 -1.86 16 21 C 0.06 0.90 5.27 -3.76 -0.02 0.88 16 22 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 25 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 26 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.66 6.44 -51.93 -0.33 0.32 16 29 H 0.07 0.94 6.88 -51.93 -0.36 0.58 16 30 H 0.07 0.86 7.31 -51.93 -0.38 0.49 16 31 H 0.06 0.66 6.40 -51.93 -0.33 0.33 16 32 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.56 6.62 -51.93 -0.34 0.22 16 39 H 0.06 0.58 6.98 -51.92 -0.36 0.22 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 42 H 0.07 0.81 5.60 -51.93 -0.29 0.52 16 43 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 44 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -29.46 330.53 -11.25 -40.71 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -8.33 Total: -3.37 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.44 Total: -10.68 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -1.44 Total: -48.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.46 -11.25 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049827891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.738 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds