Wall clock time and date at job start Mon Mar 30 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47400 * 270.00330 * 3 2 1 5 5 H 1.48494 * 109.47066 * 30.00689 * 3 2 1 6 6 H 1.48504 * 109.46678 * 150.00290 * 3 2 1 7 7 C 1.37877 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99627 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46950 * 111.00336 * 169.99546 * 10 9 7 12 12 C 1.53051 * 109.36807 * 183.19150 * 11 10 9 13 13 N 1.46959 * 109.35945 * 301.59962 * 12 11 10 14 14 C 1.46908 * 110.99898 * 183.18462 * 13 12 11 15 15 C 1.54242 * 108.89303 * 68.09190 * 14 13 12 16 16 C 1.50549 * 108.48440 * 159.17738 * 15 14 13 17 17 C 1.54069 * 112.41295 * 94.26434 * 16 15 14 18 18 C 1.54066 * 112.81898 * 318.28294 * 17 16 15 19 19 C 1.50476 * 112.49443 * 318.28272 * 18 17 16 20 20 C 1.45543 * 108.89544 * 305.30006 * 14 13 12 21 21 C 1.46959 * 110.88277 * 59.32266 * 13 12 11 22 22 C 1.46950 * 110.99858 * 293.79874 * 10 9 7 23 23 H 0.97001 * 119.99479 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47678 * 59.99527 * 9 7 2 25 25 H 1.09007 * 109.47058 * 299.99309 * 9 7 2 26 26 H 1.09006 * 109.48939 * 303.15307 * 11 10 9 27 27 H 1.09003 * 109.48975 * 63.22012 * 11 10 9 28 28 H 1.09005 * 109.48911 * 61.56157 * 12 11 10 29 29 H 1.08995 * 109.49401 * 181.63480 * 12 11 10 30 30 H 1.09000 * 108.87150 * 186.69548 * 14 13 12 31 31 H 1.09004 * 109.62750 * 278.97507 * 15 14 13 32 32 H 1.09003 * 109.62678 * 39.55069 * 15 14 13 33 33 H 1.09003 * 108.92343 * 333.51494 * 16 15 14 34 34 H 1.08993 * 108.92054 * 215.01430 * 16 15 14 35 35 H 1.09004 * 108.81632 * 197.42052 * 17 16 15 36 36 H 1.09003 * 108.81159 * 79.14429 * 17 16 15 37 37 H 1.08999 * 108.87627 * 197.51272 * 18 17 16 38 38 H 1.08992 * 108.79817 * 79.00818 * 18 17 16 39 39 H 1.09010 * 109.62659 * 334.44540 * 19 18 17 40 40 H 1.08997 * 109.78860 * 213.95895 * 19 18 17 41 41 H 1.08991 * 108.89674 * 303.44239 * 20 14 13 42 42 H 1.08998 * 108.89116 * 61.93533 * 20 14 13 43 43 H 1.08997 * 109.49074 * 180.71242 * 21 13 12 44 44 H 1.08992 * 109.48922 * 60.64140 * 21 13 12 45 45 H 1.08995 * 109.49048 * 296.77432 * 22 10 9 46 46 H 1.09006 * 109.49342 * 56.84314 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 1.5208 -4.8941 0.2345 12 6 2.5563 -6.0190 0.3052 13 7 3.3193 -6.0585 -0.9502 14 6 4.2739 -7.1751 -0.9512 15 6 3.4899 -8.5024 -1.0004 16 6 4.4088 -9.5809 -1.5093 17 6 5.0904 -10.3590 -0.3675 18 6 5.5654 -9.4449 0.7781 19 6 6.1978 -8.1748 0.2766 20 6 5.1178 -7.0748 0.2304 21 6 4.0041 -4.7800 -1.1874 22 6 2.9685 -3.6552 -1.2580 23 1 -0.4849 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 0.9733 -4.8443 1.1757 27 1 0.8252 -5.0909 -0.5813 28 1 3.2355 -5.8363 1.1379 29 1 2.0484 -6.9722 0.4521 30 1 4.9008 -7.1021 -1.8399 31 1 3.1405 -8.7586 -0.0002 32 1 2.6387 -8.4001 -1.6736 33 1 5.1776 -9.1250 -2.1332 34 1 3.8324 -10.2788 -2.1166 35 1 5.9507 -10.8933 -0.7707 36 1 4.3839 -11.0862 0.0330 37 1 6.2931 -9.9863 1.3826 38 1 4.7090 -9.1899 1.4021 39 1 6.5994 -8.3360 -0.7239 40 1 7.0005 -7.8719 0.9489 41 1 5.6060 -6.1003 0.2338 42 1 4.4919 -7.1570 1.1190 43 1 4.5516 -4.8298 -2.1285 44 1 4.6996 -4.5832 -0.3716 45 1 2.2894 -3.8379 -2.0907 46 1 3.4765 -2.7020 -1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049827891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:53 Heat of formation + Delta-G solvation = -22.620290 kcal Electronic energy + Delta-G solvation = -21454.585563 eV Core-core repulsion = 18570.452751 eV Total energy + Delta-G solvation = -2884.132812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22281 -38.94752 -36.33557 -34.60484 -32.99293 -31.98866 -31.81313 -29.21917 -26.77783 -25.72609 -24.69728 -24.23441 -23.35037 -21.60454 -20.06654 -19.94808 -18.48047 -17.56778 -16.72749 -16.38900 -15.96843 -15.85579 -15.51203 -15.33102 -15.30084 -15.00387 -14.39725 -14.30981 -13.95740 -13.77676 -13.33144 -13.22308 -13.05245 -12.86627 -12.74171 -12.50136 -12.35062 -12.26784 -12.01361 -11.84598 -11.63832 -11.47106 -11.39945 -11.29619 -11.16242 -11.12054 -10.91263 -10.63202 -9.22143 -9.01273 -8.21781 -6.32511 1.40167 1.41944 1.53630 2.39402 2.95775 3.10316 3.29685 3.64895 3.82958 4.01866 4.07829 4.18921 4.21012 4.31049 4.34731 4.39095 4.46119 4.47472 4.48923 4.57398 4.63802 4.71704 4.82608 4.90959 4.94410 4.98982 5.01804 5.07683 5.10824 5.14907 5.20776 5.24659 5.30833 5.35643 5.37999 5.39630 5.48337 5.54859 5.62740 5.63105 6.01753 6.12212 6.20228 6.36907 6.61695 6.83360 7.37359 8.89646 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.003813 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.043214 B = 7340.677653 C = 7585.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.092 3.908 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.149 4.149 21 C 0.068 3.932 22 C 0.070 3.930 23 H 0.265 0.735 24 H -0.042 1.042 25 H 0.003 0.997 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.038 0.962 45 H 0.013 0.987 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -20.429 -1.317 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.075 4.075 12 C -0.057 4.057 13 N -0.268 5.268 14 C -0.015 4.015 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.188 4.188 21 C -0.060 4.060 22 C -0.059 4.059 23 H 0.074 0.926 24 H -0.024 1.024 25 H 0.021 0.979 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.823 -20.316 -1.321 23.543 hybrid contribution -0.311 1.326 0.067 1.363 sum 11.512 -18.991 -1.253 22.243 Atomic orbital electron populations 1.70096 1.07817 1.27959 1.51709 1.25953 0.95768 1.03318 0.94701 0.85345 0.78532 0.78034 0.78482 1.19705 1.20652 1.18843 1.21438 0.93564 0.90999 1.50185 0.91911 1.19354 0.90113 0.89109 0.93206 1.62210 1.27210 1.02973 1.34420 1.22177 0.95838 0.89770 0.99729 1.22052 0.95171 0.97604 0.90878 1.62530 1.26520 1.03352 1.34384 1.20669 0.92089 0.90634 0.98143 1.21308 0.98145 0.92772 1.01591 1.21272 0.98543 0.97300 0.98058 1.21901 1.00168 0.97671 0.95375 1.21327 1.00191 0.95950 0.98083 1.21197 0.96880 0.94290 1.02017 1.21194 0.98444 0.99558 0.99595 1.22095 0.94714 0.88180 1.01015 1.21967 0.95699 0.98462 0.89734 0.92637 1.02404 0.97899 0.91368 0.96312 0.94215 0.88966 0.90414 0.91901 0.91914 0.91991 0.91570 0.91563 0.92056 0.91645 0.92867 0.91142 0.91816 0.93291 0.92268 0.89244 0.94372 0.96845 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.52 -30.55 8.47 25.60 0.22 -30.33 16 8 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 11.67 4.72 85.56 0.40 12.07 16 10 N -0.54 -24.89 4.70 -900.28 -4.23 -29.12 16 11 C 0.05 2.06 5.61 86.31 0.48 2.55 16 12 C 0.07 2.14 4.73 86.31 0.41 2.54 16 13 N -0.54 -15.58 4.62 -881.43 -4.08 -19.65 16 14 C 0.09 2.00 1.74 43.06 0.07 2.08 16 15 C -0.10 -1.88 4.29 30.22 0.13 -1.75 16 16 C -0.11 -1.68 5.32 30.16 0.16 -1.52 16 17 C -0.11 -1.47 5.85 31.32 0.18 -1.29 16 18 C -0.12 -1.69 5.32 30.14 0.16 -1.53 16 19 C -0.11 -1.69 5.61 30.20 0.17 -1.52 16 20 C -0.15 -3.10 3.88 28.74 0.11 -2.99 16 21 C 0.07 2.16 5.27 86.31 0.45 2.61 16 22 C 0.07 2.88 5.43 86.31 0.47 3.35 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 25 H 0.00 0.17 8.03 -2.38 -0.02 0.16 16 26 H 0.07 2.60 8.07 -2.38 -0.02 2.58 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.04 1.23 6.44 -2.38 -0.02 1.21 16 29 H 0.09 2.37 6.88 -2.39 -0.02 2.35 16 30 H 0.08 1.65 7.31 -2.39 -0.02 1.64 16 31 H 0.06 1.18 6.40 -2.38 -0.02 1.17 16 32 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.06 0.91 6.63 -2.39 -0.02 0.89 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.86 6.62 -2.39 -0.02 0.84 16 39 H 0.07 1.06 6.98 -2.38 -0.02 1.04 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.16 6.32 -2.39 -0.02 1.15 16 42 H 0.06 1.33 5.60 -2.39 -0.01 1.32 16 43 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 44 H 0.04 1.24 6.57 -2.39 -0.02 1.22 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 2.96 6.79 -2.38 -0.02 2.94 16 Total: -1.00 -64.40 330.53 -1.18 -65.59 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.92 Total: 8.73 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.89 Total: -15.25 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -8.02 Total: -106.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.40 -1.18 -65.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049827891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.968 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds