Wall clock time and date at job start Mon Mar 30 2020 00:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99826 * 2 1 4 4 C 1.50693 * 109.47337 * 286.07815 * 3 2 1 5 5 O 1.21277 * 120.00039 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00243 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00260 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47497 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00173 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00389 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99948 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47086 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47279 * 119.99883 * 12 10 8 15 15 H 1.48492 * 109.47336 * 240.00076 * 12 10 8 16 16 C 1.46901 * 111.00033 * 123.95247 * 2 1 3 17 17 C 1.53001 * 109.47281 * 164.70813 * 16 2 1 18 18 C 1.53001 * 117.49844 * 0.76298 * 17 16 2 19 19 C 1.52994 * 117.49792 * 292.10390 * 17 16 2 20 20 C 1.53004 * 109.47150 * 284.71106 * 16 2 1 21 21 C 1.52996 * 117.49698 * 135.10548 * 20 16 2 22 22 C 1.52999 * 117.49856 * 66.44506 * 20 16 2 23 23 H 1.08994 * 109.47569 * 305.86170 * 1 2 3 24 24 H 1.09002 * 109.46957 * 65.86629 * 1 2 3 25 25 H 1.08999 * 109.46802 * 185.85996 * 1 2 3 26 26 H 1.09000 * 109.46979 * 46.07914 * 3 2 1 27 27 H 1.09005 * 109.47255 * 166.07154 * 3 2 1 28 28 H 0.97002 * 119.99690 * 359.97438 * 6 4 3 29 29 H 1.09000 * 109.47008 * 299.99775 * 7 6 4 30 30 H 1.08993 * 109.47281 * 59.99452 * 7 6 4 31 31 H 0.96994 * 119.99847 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.46955 * 44.71101 * 16 2 1 33 33 H 1.08994 * 115.54896 * 146.42914 * 17 16 2 34 34 H 1.09005 * 117.49620 * 359.97438 * 18 17 16 35 35 H 1.08997 * 117.49996 * 145.01623 * 18 17 16 36 36 H 1.09004 * 117.49690 * 214.97202 * 19 17 16 37 37 H 1.09002 * 117.50394 * 359.97086 * 19 17 16 38 38 H 1.08999 * 115.55001 * 280.77619 * 20 16 2 39 39 H 1.08997 * 117.50160 * 0.02562 * 21 20 16 40 40 H 1.09002 * 117.49612 * 145.01910 * 21 20 16 41 41 H 1.08993 * 117.49998 * 214.97419 * 22 20 16 42 42 H 1.09004 * 117.49733 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8081 1.9814 -1.3652 5 8 1.2877 1.3370 -2.2511 6 7 2.2197 3.2428 -1.6019 7 6 2.0371 3.8360 -2.9289 8 6 2.5772 5.2429 -2.9290 9 1 3.0125 5.6542 -2.0303 10 6 2.5156 6.0050 -4.0763 11 7 1.9859 5.5040 -5.1709 12 14 3.1844 7.7491 -4.0761 13 1 3.7228 8.0727 -2.7305 14 1 4.2688 7.8636 -5.0843 15 1 2.0930 8.6979 -4.4132 16 6 1.9954 -0.7660 1.1376 17 6 3.4772 -1.0690 0.9065 18 6 4.1147 -0.5380 -0.3790 19 6 3.8325 -2.0346 -0.2258 20 6 1.8362 0.0522 2.4207 21 6 1.2986 -0.6708 3.6573 22 6 0.4133 0.3295 2.9097 23 1 -0.3634 0.6020 0.8328 24 1 -0.3633 0.4202 -0.9379 25 1 -0.3633 -1.0223 0.1049 26 1 1.4600 1.9661 0.7402 27 1 3.0568 1.3532 0.2474 28 1 2.6362 3.7581 -0.8935 29 1 2.5717 3.2412 -3.6695 30 1 0.9756 3.8547 -3.1756 31 1 1.9429 6.0401 -5.9781 32 1 1.4438 -1.7013 1.2323 33 1 4.0972 -1.0940 1.8025 34 1 3.4783 0.0268 -1.0603 35 1 5.1542 -0.2141 -0.3288 36 1 4.6867 -2.6948 -0.0747 37 1 3.0107 -2.4545 -0.8057 38 1 2.5830 0.8305 2.5777 39 1 1.0587 -1.7293 3.5569 40 1 1.6914 -0.3678 4.6279 41 1 0.2240 1.2900 3.3888 42 1 -0.4095 -0.0706 2.3171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050989097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:57 Heat of formation + Delta-G solvation = 27.317574 kcal Electronic energy + Delta-G solvation = -20818.623992 eV Core-core repulsion = 17800.823553 eV Total energy + Delta-G solvation = -3017.800439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11683 -38.25119 -36.42757 -34.75833 -33.96628 -32.27992 -28.93672 -28.13496 -26.68240 -23.53547 -22.67273 -22.30622 -22.01995 -21.27138 -19.91453 -19.18167 -17.13000 -16.54488 -15.88939 -15.56504 -15.08981 -14.91095 -14.76022 -14.44217 -13.91032 -13.66790 -13.20006 -12.98569 -12.45802 -12.24840 -11.95740 -11.89789 -11.66373 -11.53644 -11.42119 -11.21018 -10.98702 -10.92173 -10.83893 -10.54157 -10.47152 -10.29329 -9.94083 -9.86137 -9.34912 -8.95280 -8.70698 -8.04175 -7.79305 -6.14547 -4.21128 3.24459 3.31485 3.34457 3.47414 3.50800 3.79353 3.93547 4.30738 4.41541 4.50302 4.69568 4.82250 4.97533 5.06176 5.14048 5.21581 5.24147 5.34883 5.40012 5.43927 5.58101 5.63924 5.69559 5.70675 5.76278 5.81450 5.83115 5.91196 6.02957 6.07080 6.26814 6.29459 6.52303 7.05409 7.20824 7.37438 7.51816 7.56414 7.71884 8.00436 8.70002 8.83556 9.20523 9.46104 10.95728 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.004124 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.414322 B = 6787.334330 C = 7051.900227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.507 5.507 3 C 0.030 3.970 4 C 0.497 3.503 5 O -0.539 6.539 6 N -0.717 5.717 7 C 0.252 3.748 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.902 3.098 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.144 3.856 17 C -0.153 4.153 18 C -0.176 4.176 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.174 4.174 22 C -0.186 4.186 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.388 0.612 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -11.901 17.000 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.229 5.229 3 C -0.101 4.101 4 C 0.281 3.719 5 O -0.416 6.416 6 N -0.366 5.366 7 C 0.131 3.869 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.035 3.965 17 C -0.172 4.172 18 C -0.213 4.213 19 C -0.206 4.206 20 C -0.200 4.200 21 C -0.212 4.212 22 C -0.223 4.223 23 H 0.053 0.947 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.220 0.780 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.506 -12.541 15.674 20.081 hybrid contribution 0.334 1.696 1.062 2.029 sum 0.840 -10.845 16.737 19.961 Atomic orbital electron populations 1.22712 0.86945 1.01242 1.02382 1.61846 1.08233 1.12482 1.40320 1.22162 1.02351 0.89791 0.95757 1.20396 0.79600 0.82301 0.89610 1.90643 1.43487 1.61231 1.46282 1.46451 1.60516 1.13406 1.16269 1.19058 0.97250 0.92427 0.78185 1.21274 1.41118 0.97991 0.97602 0.91915 1.24949 0.95070 0.98797 0.95210 1.69986 1.43748 1.37160 1.01413 0.86382 0.78669 0.83821 0.78154 1.19659 1.20797 1.20837 1.20866 0.94087 0.95549 0.85961 1.22257 0.95241 1.06459 0.93202 1.23217 1.00899 0.97194 0.99962 1.22845 1.02911 0.92955 1.01885 1.23052 0.97563 1.03189 0.96168 1.22924 1.04380 0.97992 0.95916 1.23197 0.94202 1.00927 1.03978 0.94698 0.89934 0.92087 0.92328 0.87890 0.77968 0.95593 0.95742 0.92543 0.89796 0.87935 0.86353 0.89669 0.89646 0.88600 0.87681 0.88839 0.89044 0.88884 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.23 60.06 0.49 0.69 16 2 N -0.51 -6.99 3.37 -236.33 -0.80 -7.79 16 3 C 0.03 0.44 3.19 -4.98 -0.02 0.43 16 4 C 0.50 9.89 7.05 -10.99 -0.08 9.81 16 5 O -0.54 -12.91 14.96 5.56 0.08 -12.83 16 6 N -0.72 -15.12 5.55 -61.48 -0.34 -15.46 16 7 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 8 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 12 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.14 1.59 2.29 -67.71 -0.15 1.43 16 17 C -0.15 -1.67 5.38 -90.62 -0.49 -2.15 16 18 C -0.18 -2.26 8.27 -26.69 -0.22 -2.48 16 19 C -0.17 -1.94 10.25 -26.70 -0.27 -2.22 16 20 C -0.18 -1.72 3.63 -90.62 -0.33 -2.05 16 21 C -0.17 -1.42 10.18 -26.70 -0.27 -1.70 16 22 C -0.19 -1.69 8.78 -26.69 -0.23 -1.93 16 23 H 0.03 0.42 4.91 -51.93 -0.25 0.16 16 24 H 0.08 1.37 6.68 -51.93 -0.35 1.02 16 25 H 0.06 0.71 7.87 -51.93 -0.41 0.31 16 26 H 0.06 0.78 7.40 -51.93 -0.38 0.40 16 27 H 0.10 1.37 5.67 -51.93 -0.29 1.08 16 28 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 0.91 7.64 -51.93 -0.40 0.51 16 33 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.12 1.91 5.14 -51.93 -0.27 1.64 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.11 1.02 7.99 -51.93 -0.41 0.61 16 39 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.96 5.76 -51.93 -0.30 0.66 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -31.14 331.85 -9.09 -40.23 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.74 Total: 7.35 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.02 Total: -6.88 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.40 Total: -48.76 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.14 -9.09 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050989097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.545 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds