Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47387 * 2 1 4 4 H 1.09003 * 109.47594 * 54.99640 * 3 2 1 5 5 C 1.50699 * 109.47350 * 175.00039 * 3 2 1 6 6 H 1.08002 * 120.00631 * 119.99909 * 5 3 2 7 7 C 1.37885 * 119.99920 * 299.99815 * 5 3 2 8 8 N 1.31518 * 119.99744 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00108 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47542 * 59.99940 * 9 7 5 11 11 H 1.48500 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47414 * 300.00195 * 9 7 5 13 13 N 1.46903 * 109.47175 * 294.99764 * 3 2 1 14 14 C 1.46954 * 111.00004 * 180.02562 * 13 3 2 15 15 C 1.53055 * 109.36183 * 183.18905 * 14 13 3 16 16 N 1.46956 * 109.36438 * 301.59998 * 15 14 13 17 17 C 1.46903 * 110.99891 * 183.19121 * 16 15 14 18 18 C 1.54887 * 110.48638 * 65.22097 * 17 16 15 19 19 C 1.54893 * 102.74533 * 156.62379 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 C 1.46955 * 110.88259 * 59.31827 * 16 15 14 23 23 C 1.46956 * 110.99891 * 303.80239 * 13 3 2 24 24 H 1.09003 * 109.47458 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46778 * 300.00423 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99696 * 1 2 3 27 27 H 1.08995 * 109.47207 * 239.99297 * 2 1 3 28 28 H 1.09008 * 109.46973 * 119.99839 * 2 1 3 29 29 H 0.97002 * 119.99448 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.49139 * 63.22494 * 14 13 3 31 31 H 1.09001 * 109.50795 * 303.16671 * 14 13 3 32 32 H 1.08995 * 109.48786 * 181.62874 * 15 14 13 33 33 H 1.09003 * 109.48606 * 61.56878 * 15 14 13 34 34 H 1.09001 * 110.53514 * 302.60892 * 17 16 15 35 35 H 1.09001 * 110.75744 * 274.93280 * 18 17 16 36 36 H 1.09000 * 110.75698 * 38.31099 * 18 17 16 37 37 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 38 38 H 1.09001 * 110.49013 * 80.73631 * 19 18 17 39 39 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 40 40 H 1.08996 * 110.03427 * 142.89930 * 20 19 18 41 41 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 42 42 H 1.09003 * 110.07498 * 119.30332 * 21 20 19 43 43 H 1.09004 * 109.48618 * 60.64837 * 22 16 15 44 44 H 1.08992 * 109.48717 * 180.70922 * 22 16 15 45 45 H 1.09000 * 109.48676 * 296.77400 * 23 13 3 46 46 H 1.08998 * 109.49193 * 56.81837 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0049 0.8799 1.3812 10 1 6.5006 2.2797 1.3808 11 1 6.3978 0.2166 2.6505 12 1 6.5967 0.1450 0.2344 13 7 1.6515 2.0992 -1.2553 14 6 2.1261 3.4895 -1.2911 15 6 1.6342 4.1608 -2.5756 16 7 2.1273 3.4088 -3.7379 17 6 1.7387 4.0656 -4.9932 18 6 2.4310 5.4454 -5.1200 19 6 2.4243 5.6919 -6.6491 20 6 2.6979 4.3010 -7.2577 21 6 2.2620 3.2670 -6.2049 22 6 1.6527 2.0185 -3.7021 23 6 2.1451 1.3476 -2.4176 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8293 -0.0613 2.9499 30 1 3.2158 3.5025 -1.2683 31 1 1.7379 4.0290 -0.4271 32 1 2.0092 5.1833 -2.6181 33 1 0.5443 4.1721 -2.5855 34 1 0.6557 4.1757 -5.0478 35 1 1.8575 6.2143 -4.6023 36 1 3.4518 5.4018 -4.7402 37 1 3.2130 6.3914 -6.9262 38 1 1.4520 6.0647 -6.9713 39 1 3.7608 4.1900 -7.4724 40 1 2.1167 4.1720 -8.1707 41 1 3.1133 2.6541 -5.9086 42 1 1.4694 2.6356 -6.6064 43 1 0.5630 2.0055 -3.7249 44 1 2.0412 1.4793 -4.5660 45 1 3.2350 1.3367 -2.4074 46 1 1.7708 0.3248 -2.3750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052061649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -3.758894 kcal Electronic energy + Delta-G solvation = -21777.126680 eV Core-core repulsion = 18893.811759 eV Total energy + Delta-G solvation = -2883.314921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33396 -37.48753 -34.96243 -32.32848 -31.22696 -30.36057 -28.53963 -28.13812 -26.25884 -24.28730 -23.05916 -22.39881 -20.37322 -19.89834 -19.50791 -18.73195 -16.57970 -16.02867 -15.66617 -14.92335 -14.33014 -14.17176 -14.12963 -13.81529 -13.58305 -13.30212 -12.98025 -12.58976 -12.21161 -11.88507 -11.61753 -11.35154 -11.29641 -11.18232 -11.12804 -10.90534 -10.87414 -10.70254 -10.58509 -10.55530 -10.43149 -10.25060 -10.18208 -9.70090 -9.64871 -9.27100 -9.04219 -8.31487 -7.95766 -7.05671 -5.94198 -4.07389 3.31215 3.36000 3.39458 4.17890 4.43573 4.55284 4.67827 4.91693 5.12002 5.29524 5.37345 5.43625 5.49531 5.53320 5.61802 5.69664 5.72500 5.84462 5.87512 5.93393 5.99548 6.04591 6.06266 6.17994 6.22834 6.29678 6.32633 6.35101 6.44580 6.48291 6.65210 6.73057 6.85946 6.95663 7.09573 7.21338 7.33470 7.48757 7.49960 7.67268 7.79797 8.03252 8.20640 8.38840 8.50800 9.02958 9.59876 11.04532 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.005223 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.775771 B = 5359.366342 C = 5975.032569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.536 5.536 14 C 0.065 3.935 15 C 0.060 3.940 16 N -0.529 5.529 17 C 0.079 3.921 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.119 4.119 22 C 0.058 3.942 23 C 0.061 3.939 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 6.671 -14.209 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.260 5.260 14 C -0.064 4.064 15 C -0.068 4.068 16 N -0.254 5.254 17 C -0.030 4.030 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.070 4.070 23 C -0.068 4.068 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.738 6.560 -14.009 15.914 hybrid contribution 1.059 -0.067 0.199 1.080 sum -2.679 6.494 -13.809 15.493 Atomic orbital electron populations 1.21711 0.98906 0.98357 1.00539 1.21663 0.92191 0.99359 1.02070 1.19255 0.93069 0.90983 0.85904 0.94429 1.21723 0.92876 1.37889 1.05415 0.92484 1.24901 0.97713 0.95080 0.95718 1.69868 1.34814 1.38442 1.09455 0.86747 0.86349 0.78201 0.77229 1.20393 1.21339 1.20387 1.62654 1.58188 1.01284 1.03887 1.21895 0.99132 0.90682 0.94663 1.22205 0.97183 0.96737 0.90668 1.62281 1.59555 1.02401 1.01177 1.22474 0.96622 0.94070 0.89826 1.22529 1.01647 0.95704 0.95399 1.22317 1.01185 0.96943 0.95707 1.22078 1.01108 0.94762 0.97950 1.22208 1.01184 0.97856 0.94435 1.22239 0.97327 0.88682 0.98740 1.21994 0.98793 0.97019 0.88969 0.95624 0.94181 0.93563 0.94751 0.88916 0.92925 0.93436 0.91641 0.91429 0.95108 0.94233 0.92047 0.90370 0.91789 0.92000 0.91866 0.92264 0.90543 0.92350 0.95146 0.91380 0.93736 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.45 16 2 C -0.11 -2.70 4.93 -26.73 -0.13 -2.83 16 3 C 0.21 5.26 1.82 -68.87 -0.13 5.14 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.42 7.12 -34.44 -0.25 -14.66 16 6 H 0.06 1.56 5.80 -52.49 -0.30 1.25 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.94 11.29 55.43 0.63 -24.31 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.54 -11.34 4.19 -227.88 -0.96 -12.29 16 14 C 0.07 1.29 5.25 -3.77 -0.02 1.27 16 15 C 0.06 0.98 5.46 -3.76 -0.02 0.96 16 16 N -0.53 -8.34 4.54 -224.50 -1.02 -9.36 16 17 C 0.08 1.02 2.58 -66.05 -0.17 0.85 16 18 C -0.11 -1.32 5.47 -24.74 -0.14 -1.46 16 19 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 20 C -0.12 -1.18 6.80 -25.61 -0.17 -1.35 16 21 C -0.12 -1.37 5.19 -25.61 -0.13 -1.51 16 22 C 0.06 0.95 5.33 -3.77 -0.02 0.93 16 23 C 0.06 1.20 4.92 -3.77 -0.02 1.18 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 27 H 0.03 0.79 6.00 -51.93 -0.31 0.48 16 28 H 0.09 2.45 5.95 -51.92 -0.31 2.15 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 1.05 6.58 -51.93 -0.34 0.71 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.00 7.04 -51.93 -0.37 0.63 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.67 7.89 -51.93 -0.41 0.27 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.98 7.43 -51.93 -0.39 0.59 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 1.01 6.58 -51.93 -0.34 0.67 16 45 H 0.04 0.98 6.81 -51.93 -0.35 0.63 16 46 H 0.07 1.45 5.95 -51.93 -0.31 1.14 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -27.05 335.63 -10.87 -37.92 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.47 Total: 0.23 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.10 Total: -13.52 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -1.35 Total: -45.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.05 -10.87 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052061649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.162 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds