Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47387 * 2 1 4 4 H 1.09003 * 109.47594 * 54.99640 * 3 2 1 5 5 C 1.50699 * 109.47350 * 175.00039 * 3 2 1 6 6 H 1.08002 * 120.00631 * 119.99909 * 5 3 2 7 7 C 1.37885 * 119.99920 * 299.99815 * 5 3 2 8 8 N 1.31518 * 119.99744 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00108 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47542 * 59.99940 * 9 7 5 11 11 H 1.48500 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47414 * 300.00195 * 9 7 5 13 13 N 1.46903 * 109.47175 * 294.99764 * 3 2 1 14 14 C 1.46954 * 111.00004 * 180.02562 * 13 3 2 15 15 C 1.53055 * 109.36183 * 183.18905 * 14 13 3 16 16 N 1.46956 * 109.36438 * 301.59998 * 15 14 13 17 17 C 1.46903 * 110.99891 * 183.19121 * 16 15 14 18 18 C 1.54887 * 110.48638 * 65.22097 * 17 16 15 19 19 C 1.54893 * 102.74533 * 156.62379 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 C 1.46955 * 110.88259 * 59.31827 * 16 15 14 23 23 C 1.46956 * 110.99891 * 303.80239 * 13 3 2 24 24 H 1.09003 * 109.47458 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46778 * 300.00423 * 1 2 3 26 26 H 1.08996 * 109.46950 * 59.99696 * 1 2 3 27 27 H 1.08995 * 109.47207 * 239.99297 * 2 1 3 28 28 H 1.09008 * 109.46973 * 119.99839 * 2 1 3 29 29 H 0.97002 * 119.99448 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.49139 * 63.22494 * 14 13 3 31 31 H 1.09001 * 109.50795 * 303.16671 * 14 13 3 32 32 H 1.08995 * 109.48786 * 181.62874 * 15 14 13 33 33 H 1.09003 * 109.48606 * 61.56878 * 15 14 13 34 34 H 1.09001 * 110.53514 * 302.60892 * 17 16 15 35 35 H 1.09001 * 110.75744 * 274.93280 * 18 17 16 36 36 H 1.09000 * 110.75698 * 38.31099 * 18 17 16 37 37 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 38 38 H 1.09001 * 110.49013 * 80.73631 * 19 18 17 39 39 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 40 40 H 1.08996 * 110.03427 * 142.89930 * 20 19 18 41 41 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 42 42 H 1.09003 * 110.07498 * 119.30332 * 21 20 19 43 43 H 1.09004 * 109.48618 * 60.64837 * 22 16 15 44 44 H 1.08992 * 109.48717 * 180.70922 * 22 16 15 45 45 H 1.09000 * 109.48676 * 296.77400 * 23 13 3 46 46 H 1.08998 * 109.49193 * 56.81837 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0049 0.8799 1.3812 10 1 6.5006 2.2797 1.3808 11 1 6.3978 0.2166 2.6505 12 1 6.5967 0.1450 0.2344 13 7 1.6515 2.0992 -1.2553 14 6 2.1261 3.4895 -1.2911 15 6 1.6342 4.1608 -2.5756 16 7 2.1273 3.4088 -3.7379 17 6 1.7387 4.0656 -4.9932 18 6 2.4310 5.4454 -5.1200 19 6 2.4243 5.6919 -6.6491 20 6 2.6979 4.3010 -7.2577 21 6 2.2620 3.2670 -6.2049 22 6 1.6527 2.0185 -3.7021 23 6 2.1451 1.3476 -2.4176 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8293 -0.0613 2.9499 30 1 3.2158 3.5025 -1.2683 31 1 1.7379 4.0290 -0.4271 32 1 2.0092 5.1833 -2.6181 33 1 0.5443 4.1721 -2.5855 34 1 0.6557 4.1757 -5.0478 35 1 1.8575 6.2143 -4.6023 36 1 3.4518 5.4018 -4.7402 37 1 3.2130 6.3914 -6.9262 38 1 1.4520 6.0647 -6.9713 39 1 3.7608 4.1900 -7.4724 40 1 2.1167 4.1720 -8.1707 41 1 3.1133 2.6541 -5.9086 42 1 1.4694 2.6356 -6.6064 43 1 0.5630 2.0055 -3.7249 44 1 2.0412 1.4793 -4.5660 45 1 3.2350 1.3367 -2.4074 46 1 1.7708 0.3248 -2.3750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052061649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -19.370798 kcal Electronic energy + Delta-G solvation = -21777.803663 eV Core-core repulsion = 18893.811759 eV Total energy + Delta-G solvation = -2883.991904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64285 -38.84610 -36.42860 -34.19406 -32.95394 -31.81081 -29.57995 -29.44691 -27.89996 -25.87497 -24.59216 -24.07457 -21.61838 -21.07160 -20.75274 -20.38840 -18.31636 -17.59678 -16.83053 -16.46419 -15.91685 -15.56973 -15.48672 -15.36335 -15.08334 -14.70169 -14.20529 -14.13215 -13.73868 -13.43516 -13.23855 -12.94036 -12.82525 -12.72433 -12.50960 -12.34931 -12.15824 -12.08446 -11.97084 -11.82037 -11.66906 -11.60795 -11.57055 -11.33363 -11.24866 -11.04858 -10.90707 -10.40781 -9.21814 -8.90364 -8.01658 -6.23974 1.37423 1.38119 1.45640 2.40590 2.98131 3.15967 3.44335 3.65447 3.82507 4.04270 4.16969 4.29646 4.36312 4.49377 4.52057 4.58524 4.62098 4.62887 4.69915 4.72410 4.74652 4.82076 4.82493 4.89544 4.94917 5.00187 5.12455 5.14505 5.18101 5.24808 5.26017 5.28305 5.32556 5.39946 5.41800 5.49208 5.53474 5.63499 5.80068 6.04394 6.17764 6.21089 6.31879 6.44067 6.67600 6.96605 7.46323 8.92629 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.005223 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.775771 B = 5359.366342 C = 5975.032569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.531 5.531 14 C 0.066 3.934 15 C 0.073 3.927 16 N -0.542 5.542 17 C 0.077 3.923 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.118 4.118 22 C 0.069 3.931 23 C 0.066 3.934 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.086 0.914 45 H 0.015 0.985 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 7.356 -16.376 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.255 5.255 14 C -0.063 4.063 15 C -0.055 4.055 16 N -0.267 5.267 17 C -0.031 4.031 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.059 4.059 23 C -0.063 4.063 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.034 0.966 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.153 7.255 -16.195 18.225 hybrid contribution 1.189 -0.261 0.871 1.497 sum -2.964 6.994 -15.324 17.103 Atomic orbital electron populations 1.21562 0.96240 0.99836 1.00576 1.21499 0.94518 0.98138 1.00556 1.19033 0.91755 0.91487 0.86469 0.97954 1.21901 0.94097 1.37538 1.05113 0.93647 1.25564 1.01566 0.94960 0.95560 1.69990 1.36208 1.38999 1.09780 0.85842 0.81748 0.78113 0.77290 1.20240 1.20716 1.20121 1.62612 1.57909 1.01891 1.03094 1.21899 0.97388 0.90206 0.96763 1.22044 0.97226 0.97146 0.89118 1.62266 1.59962 1.02213 1.02239 1.22591 0.96995 0.94871 0.88679 1.22520 1.00591 0.94986 0.97147 1.22305 1.02281 0.97102 0.93876 1.22074 1.01450 0.94163 0.97933 1.22201 1.00810 0.98189 0.94360 1.22099 0.97412 0.89174 0.97193 1.21975 0.96966 0.97327 0.90035 0.93411 0.94892 0.92653 0.94659 0.91885 0.92947 0.96221 0.92310 0.89629 0.94686 0.93886 0.91481 0.91878 0.90757 0.90829 0.91787 0.90676 0.92075 0.91467 0.94693 0.89535 0.96639 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.80 71.98 0.71 -4.31 16 2 C -0.11 -5.21 4.93 30.59 0.15 -5.06 16 3 C 0.22 11.14 1.82 44.17 0.08 11.22 16 4 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 5 C -0.55 -30.15 7.12 25.60 0.18 -29.97 16 6 H 0.05 2.57 5.80 -2.91 -0.02 2.55 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -52.39 11.29 21.45 0.24 -52.15 16 9 Si 0.94 44.40 29.54 68.60 2.03 46.43 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.53 -22.81 4.19 -874.88 -3.67 -26.48 16 14 C 0.07 2.67 5.25 86.31 0.45 3.13 16 15 C 0.07 2.30 5.46 86.31 0.47 2.78 16 16 N -0.54 -16.37 4.54 -864.20 -3.92 -20.29 16 17 C 0.08 1.81 2.58 45.99 0.12 1.93 16 18 C -0.11 -2.38 5.47 31.89 0.17 -2.20 16 19 C -0.12 -1.88 6.83 31.67 0.22 -1.67 16 20 C -0.12 -1.95 6.80 31.32 0.21 -1.74 16 21 C -0.12 -2.43 5.19 31.32 0.16 -2.27 16 22 C 0.07 2.17 5.33 86.31 0.46 2.63 16 23 C 0.07 2.59 4.92 86.31 0.42 3.02 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 2.11 7.75 -2.39 -0.02 2.09 16 27 H 0.03 1.65 6.00 -2.39 -0.01 1.63 16 28 H 0.06 3.42 5.95 -2.38 -0.01 3.41 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.02 0.89 6.58 -2.39 -0.02 0.88 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.09 2.40 7.04 -2.39 -0.02 2.39 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.31 7.89 -2.39 -0.02 1.29 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.46 7.43 -2.39 -0.02 1.44 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 2.41 6.58 -2.39 -0.02 2.39 16 45 H 0.02 0.70 6.81 -2.39 -0.02 0.68 16 46 H 0.07 2.80 5.95 -2.39 -0.01 2.78 16 Total: -1.00 -59.00 335.63 -0.14 -59.14 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.92 Total: 14.13 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.26 Total: -20.77 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -7.35 Total: -98.92 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -59.00 -0.14 -59.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052061649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.771 kcal (2) G-P(sol) polarization free energy of solvation -59.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds