Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47101 * 300.00160 * 3 2 1 6 6 H 1.48504 * 109.47193 * 59.99776 * 3 2 1 7 7 C 1.37878 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47567 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47715 * 180.02562 * 11 10 9 13 13 C 1.46952 * 111.00427 * 170.00107 * 12 11 10 14 14 C 1.53051 * 109.36758 * 176.80990 * 13 12 11 15 15 N 1.46963 * 109.36204 * 58.39811 * 14 13 12 16 16 C 1.46897 * 110.99882 * 176.81371 * 15 14 13 17 17 C 1.54269 * 110.03046 * 298.14228 * 16 15 14 18 18 C 1.54889 * 104.19509 * 217.10462 * 17 16 15 19 19 C 1.54889 * 102.74675 * 37.94408 * 18 17 16 20 20 C 1.53872 * 110.03407 * 180.97492 * 16 15 14 21 21 C 1.46952 * 110.88258 * 300.68309 * 15 14 13 22 22 C 1.46954 * 110.99935 * 46.19624 * 12 11 10 23 23 H 0.96996 * 120.00237 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47472 * 59.99985 * 9 7 2 25 25 H 1.09000 * 109.47214 * 299.99527 * 9 7 2 26 26 H 1.09001 * 109.46893 * 59.99733 * 10 9 7 27 27 H 1.09004 * 109.47277 * 299.99894 * 10 9 7 28 28 H 1.09004 * 109.46810 * 59.99589 * 11 10 9 29 29 H 1.09004 * 109.46930 * 300.00344 * 11 10 9 30 30 H 1.09004 * 109.48555 * 56.84064 * 13 12 11 31 31 H 1.09003 * 109.48837 * 296.78041 * 13 12 11 32 32 H 1.09001 * 109.49111 * 178.36894 * 14 13 12 33 33 H 1.09004 * 109.48490 * 298.43612 * 14 13 12 34 34 H 1.09000 * 110.01845 * 59.58037 * 16 15 14 35 35 H 1.08997 * 110.48665 * 335.78119 * 17 16 15 36 36 H 1.09000 * 110.48698 * 98.42928 * 17 16 15 37 37 H 1.08998 * 110.75528 * 279.62749 * 18 17 16 38 38 H 1.09000 * 110.75839 * 156.25886 * 18 17 16 39 39 H 1.09005 * 110.48261 * 203.38032 * 19 18 17 40 40 H 1.08992 * 110.48875 * 80.73684 * 19 18 17 41 41 H 1.08999 * 110.03555 * 238.57184 * 20 16 15 42 42 H 1.09003 * 110.02991 * 359.95277 * 20 16 15 43 43 H 1.09006 * 109.48771 * 299.35738 * 21 15 14 44 44 H 1.08993 * 109.49243 * 179.28955 * 21 15 14 45 45 H 1.09001 * 109.49196 * 303.16149 * 22 12 11 46 46 H 1.09007 * 109.48405 * 63.22571 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7503 -7.3818 0.2406 14 6 2.7646 -8.5247 0.1547 15 7 3.8286 -8.3074 1.1449 16 6 4.7832 -9.4239 1.1454 17 6 4.0658 -10.7322 1.5372 18 6 5.1064 -11.4936 2.3955 19 6 5.7793 -10.3571 3.2047 20 6 5.8727 -9.1854 2.2056 21 6 4.5133 -7.0292 0.9060 22 6 3.4990 -5.8863 0.9919 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6042 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 0.8534 -5.0450 -0.8886 29 1 0.8540 -5.0445 0.8914 30 1 0.9756 -7.5256 -0.5126 31 1 1.2968 -7.3718 1.2318 32 1 2.2644 -9.4711 0.3601 33 1 3.1982 -8.5517 -0.8451 34 1 5.2374 -9.5270 0.1599 35 1 3.1724 -10.5167 2.1232 36 1 3.8102 -11.3082 0.6479 37 1 5.8343 -11.9995 1.7612 38 1 4.6138 -12.2024 3.0611 39 1 6.7741 -10.6594 3.5321 40 1 5.1626 -10.0810 4.0599 41 1 6.8556 -9.1736 1.7347 42 1 5.6935 -8.2408 2.7191 43 1 4.9667 -7.0392 -0.0852 44 1 5.2879 -6.8853 1.6591 45 1 3.9992 -4.9399 0.7864 46 1 3.0653 -5.8593 1.9916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052061720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = -28.838506 kcal Electronic energy + Delta-G solvation = -20657.762943 eV Core-core repulsion = 17773.360489 eV Total energy + Delta-G solvation = -2884.402455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77316 -38.81222 -36.40308 -35.10416 -33.10271 -32.07332 -29.76413 -29.51282 -27.85322 -26.02416 -24.66260 -23.92361 -21.80231 -21.25098 -20.87735 -20.37395 -18.54234 -17.74027 -16.67410 -16.52217 -16.30801 -15.90860 -15.69709 -15.62401 -15.35454 -14.95364 -14.31506 -14.28277 -14.19730 -13.70062 -13.22767 -13.04733 -12.77318 -12.72198 -12.67460 -12.39625 -12.29161 -12.08890 -11.95809 -11.87327 -11.70690 -11.63296 -11.49743 -11.42741 -11.35993 -11.27375 -11.01544 -10.56473 -9.38344 -9.21147 -8.21070 -6.32223 1.39521 1.39807 1.53481 2.40268 2.87778 2.95006 3.12090 3.63355 3.77066 3.90102 4.01879 4.10712 4.16546 4.23543 4.33796 4.42282 4.48784 4.49904 4.56555 4.61595 4.66820 4.68197 4.75371 4.77539 4.86568 4.90919 4.93338 4.98564 5.02251 5.06834 5.10035 5.12791 5.22110 5.25448 5.27371 5.33786 5.49953 5.52027 5.71842 5.83788 6.00822 6.02591 6.19507 6.23968 6.28805 6.84678 7.37103 8.91245 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.003102 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.634530 B = 9025.666952 C = 9509.929001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.068 3.932 12 N -0.545 5.545 13 C 0.055 3.945 14 C 0.065 3.935 15 N -0.540 5.540 16 C 0.078 3.922 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.122 4.122 21 C 0.063 3.937 22 C 0.053 3.947 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.011 1.011 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.911 -23.779 3.832 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.060 4.060 12 N -0.270 5.270 13 C -0.073 4.073 14 C -0.063 4.063 15 N -0.266 5.266 16 C -0.030 4.030 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.065 4.065 22 C -0.075 4.075 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.773 -23.680 3.824 26.295 hybrid contribution -0.179 1.298 -0.113 1.315 sum 10.594 -22.381 3.711 25.039 Atomic orbital electron populations 1.70105 1.07834 1.27743 1.51788 1.26007 0.95796 1.03448 0.94710 0.85380 0.79083 0.78644 0.77833 1.18541 1.20282 1.20300 1.21708 0.93518 0.92339 1.50389 0.92235 1.18965 0.94368 0.93087 0.94709 1.21520 0.98130 0.92857 1.00680 1.22020 0.93930 0.90093 0.99913 1.62270 1.12917 1.02374 1.49429 1.22219 0.96389 0.88680 1.00014 1.22104 0.92671 0.98072 0.93443 1.62367 1.12814 1.02128 1.49266 1.22378 0.92257 0.90716 0.97646 1.22424 0.98756 0.94030 1.00029 1.22461 0.97765 0.97232 0.98279 1.22299 1.00981 0.94753 0.97643 1.22291 0.97506 0.99640 0.96589 1.22148 0.95761 0.88432 1.00172 1.22244 0.93268 0.98895 0.93143 0.92741 0.98975 0.99241 0.92768 0.92866 0.91243 0.95921 0.89691 0.94932 0.88641 0.94663 0.94432 0.91286 0.91242 0.90877 0.90736 0.90801 0.92083 0.91235 0.91539 0.94758 0.88955 0.90247 0.95282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -4.05 4.42 30.59 0.14 -3.91 16 11 C 0.07 2.49 5.28 86.30 0.46 2.95 16 12 N -0.54 -17.04 4.86 -895.72 -4.35 -21.39 16 13 C 0.06 1.43 5.58 86.31 0.48 1.91 16 14 C 0.07 1.42 5.42 86.31 0.47 1.89 16 15 N -0.54 -11.92 4.49 -866.24 -3.89 -15.82 16 16 C 0.08 1.39 2.67 45.64 0.12 1.51 16 17 C -0.11 -1.70 5.20 31.67 0.16 -1.53 16 18 C -0.12 -1.45 6.91 31.89 0.22 -1.23 16 19 C -0.12 -1.61 6.83 31.67 0.22 -1.39 16 20 C -0.12 -1.96 5.91 31.32 0.19 -1.78 16 21 C 0.06 1.51 5.30 86.31 0.46 1.97 16 22 C 0.05 1.55 4.93 86.31 0.43 1.98 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.05 2.27 6.26 -2.39 -0.01 2.25 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.02 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.72 6.94 -2.39 -0.02 1.70 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.17 7.85 -2.39 -0.02 1.15 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.22 6.18 -2.39 -0.01 1.20 16 43 H 0.03 0.86 8.14 -2.38 -0.02 0.85 16 44 H 0.09 1.98 6.06 -2.39 -0.01 1.96 16 45 H 0.08 2.49 5.99 -2.39 -0.01 2.48 16 46 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -64.35 345.15 -0.85 -65.21 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.90 Total: 9.72 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.17 Total: -27.09 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -7.96 Total: -94.82 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.35 -0.85 -65.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052061720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds