Wall clock time and date at job start Mon Mar 30 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48499 * 109.46959 * 89.99794 * 3 2 1 5 5 H 1.48502 * 109.47192 * 329.99784 * 3 2 1 6 6 H 1.48495 * 109.47312 * 209.99882 * 3 2 1 7 7 C 1.38803 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99770 * 140.67464 * 7 2 1 9 9 N 1.36935 * 120.00648 * 320.67388 * 7 2 1 10 10 C 1.50233 * 120.54662 * 350.88862 * 9 7 2 11 11 C 1.46649 * 106.98483 * 111.48079 * 10 9 7 12 12 C 1.52472 * 114.10996 * 58.13692 * 11 10 9 13 13 N 1.43917 * 105.41524 * 269.64056 * 12 11 10 14 14 C 1.46903 * 111.00101 * 223.42980 * 13 12 11 15 15 C 1.52996 * 109.47153 * 170.00305 * 14 13 12 16 16 C 1.53001 * 109.47205 * 294.99980 * 15 14 13 17 17 C 1.52994 * 109.47570 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.46903 * 59.99917 * 17 16 15 19 19 C 1.52995 * 109.47188 * 300.00070 * 18 17 16 20 20 C 1.53003 * 109.47337 * 60.00200 * 19 18 17 21 21 C 1.48823 * 112.04430 * 98.70832 * 13 12 11 22 22 C 1.43657 * 120.55298 * 170.60909 * 9 7 2 23 23 H 0.97002 * 120.00058 * 173.69649 * 1 2 3 24 24 H 1.09000 * 109.94519 * 230.84654 * 10 9 7 25 25 H 1.08997 * 109.95292 * 352.02033 * 10 9 7 26 26 H 1.09000 * 108.55128 * 179.33146 * 11 10 9 27 27 H 1.08998 * 108.55353 * 297.08660 * 11 10 9 28 28 H 1.08999 * 110.25309 * 28.61413 * 12 11 10 29 29 H 1.09004 * 110.24934 * 150.52601 * 12 11 10 30 30 H 1.09003 * 109.46711 * 290.00469 * 14 13 12 31 31 H 1.08999 * 109.46704 * 49.99890 * 14 13 12 32 32 H 1.08997 * 109.47105 * 54.99896 * 15 14 13 33 33 H 1.09006 * 109.47041 * 300.00602 * 16 15 14 34 34 H 1.09004 * 109.47191 * 59.99468 * 16 15 14 35 35 H 1.09002 * 109.46963 * 300.00512 * 17 16 15 36 36 H 1.09001 * 109.47356 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.46879 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47231 * 60.00299 * 18 17 16 39 39 H 1.09002 * 109.47598 * 299.99968 * 19 18 17 40 40 H 1.08998 * 109.47250 * 179.97438 * 19 18 17 41 41 H 1.08993 * 109.47771 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46966 * 59.99381 * 20 19 18 43 43 H 1.09000 * 109.23279 * 81.31117 * 21 13 12 44 44 H 1.08999 * 109.23387 * 200.72830 * 21 13 12 45 45 H 1.08998 * 108.14259 * 30.87901 * 22 9 7 46 46 H 1.08993 * 108.14135 * 147.40481 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5477 1.4403 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 2.9068 -1.3083 -0.5922 9 7 1.5581 -2.2535 0.7525 10 6 0.4374 -2.0635 1.7348 11 6 -0.7189 -2.7992 1.2130 12 6 -0.4641 -4.2866 0.9950 13 7 0.0102 -4.3990 -0.3591 14 6 -0.6209 -5.5343 -1.0454 15 6 -0.2894 -5.4761 -2.5379 16 6 -0.9244 -4.2274 -3.1531 17 6 -0.5925 -4.1689 -4.6455 18 6 -1.1435 -5.4160 -5.3397 19 6 -0.5085 -6.6647 -4.7246 20 6 -0.8404 -6.7233 -3.2322 21 6 1.4940 -4.4937 -0.4251 22 6 2.1436 -3.5576 0.6109 23 1 -0.4850 -0.8350 -0.0922 24 1 0.7241 -2.4627 2.7077 25 1 0.1966 -1.0042 1.8241 26 1 -1.5459 -2.6881 1.9143 27 1 -1.0110 -2.3562 0.2609 28 1 0.2938 -4.6456 1.6913 29 1 -1.3885 -4.8502 1.1213 30 1 -0.2446 -6.4672 -0.6257 31 1 -1.7014 -5.4850 -0.9109 32 1 0.7919 -5.4358 -2.6686 33 1 -2.0058 -4.2677 -3.0223 34 1 -0.5316 -3.3389 -2.6587 35 1 0.4890 -4.1284 -4.7758 36 1 -1.0445 -3.2790 -5.0836 37 1 -0.9066 -5.3745 -6.4029 38 1 -2.2249 -5.4565 -5.2094 39 1 0.5730 -6.6242 -4.8550 40 1 -0.9013 -7.5531 -5.2189 41 1 -0.3877 -7.6125 -2.7938 42 1 -1.9218 -6.7637 -3.1019 43 1 1.7975 -5.5210 -0.2236 44 1 1.8278 -4.2100 -1.4232 45 1 3.1910 -3.4315 0.3370 46 1 2.1095 -4.0522 1.5816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054318893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:08 Heat of formation + Delta-G solvation = 17.118400 kcal Electronic energy + Delta-G solvation = -22184.196084 eV Core-core repulsion = 19301.786471 eV Total energy + Delta-G solvation = -2882.409614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.14941 -37.80323 -35.06181 -32.14346 -31.71801 -30.63080 -30.37926 -27.22570 -25.63667 -23.89285 -23.10766 -22.35518 -20.88680 -20.13442 -19.59743 -19.00606 -17.02219 -15.55818 -15.40372 -15.00548 -14.56607 -14.16535 -13.94872 -13.69596 -13.61178 -13.48756 -12.76624 -12.65792 -12.54387 -12.20629 -11.97622 -11.72460 -11.51199 -11.35421 -10.96771 -10.91619 -10.79758 -10.55513 -10.36343 -10.21111 -10.10972 -10.02458 -9.91022 -9.82066 -9.66472 -9.64907 -9.35235 -8.13664 -7.52443 -6.85165 -6.00836 -2.89111 3.61309 3.62891 3.79724 4.42867 4.73802 4.80095 4.91397 4.97033 5.23773 5.28774 5.40415 5.43014 5.52450 5.58939 5.65301 5.67527 5.72015 5.76393 5.83177 5.89076 5.94270 6.02762 6.05029 6.08715 6.13311 6.16797 6.22511 6.26663 6.34261 6.37530 6.46183 6.52554 6.69048 6.72491 6.77349 6.79474 6.90753 6.99021 7.32554 7.45146 7.73650 7.94252 8.09926 8.67808 9.25492 9.98882 10.43562 11.30771 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.006046 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.717543 B = 4629.876966 C = 5335.715017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.019 4.019 3 Si 1.042 2.958 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.350 4.350 8 H 0.063 0.937 9 N -0.581 5.581 10 C 0.133 3.867 11 C -0.130 4.130 12 C 0.065 3.935 13 N -0.517 5.517 14 C 0.060 3.940 15 C -0.080 4.080 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.113 4.113 21 C 0.029 3.971 22 C 0.159 3.841 23 H 0.278 0.722 24 H 0.017 0.983 25 H 0.094 0.906 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -12.899 -4.549 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.221 4.221 3 Si 0.873 3.127 4 H -0.224 1.224 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.478 4.478 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.009 3.991 11 C -0.170 4.170 12 C -0.064 4.064 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.098 4.098 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.101 4.101 22 C 0.029 3.971 23 H 0.091 0.909 24 H 0.035 0.965 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.036 0.964 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.753 -10.781 -4.702 12.079 hybrid contribution 0.383 -2.569 0.115 2.600 sum -2.370 -13.350 -4.586 14.314 Atomic orbital electron populations 1.70755 1.07076 1.31075 1.45910 1.25362 0.95937 1.00558 1.00260 0.83857 0.75180 0.77257 0.76404 1.22377 1.22084 1.22130 1.19951 1.07679 0.92004 1.28160 0.91932 1.44407 1.39978 1.03509 1.42343 1.20662 0.87118 1.01470 0.89850 1.21090 0.98757 0.94646 1.02476 1.21535 0.97800 0.97704 0.89332 1.61749 1.06613 1.40384 1.15390 1.22265 0.98783 0.91586 0.94159 1.21114 1.00388 0.94652 0.93684 1.21436 0.99791 0.98864 0.94061 1.21546 1.00791 0.97009 0.96396 1.21539 1.00070 0.95133 0.98816 1.21496 1.00651 0.97541 0.95698 1.21566 1.00750 0.97647 0.95158 1.23561 0.87089 0.97069 1.02423 1.20289 0.95811 0.86562 0.94424 0.90859 0.96451 0.88766 0.94619 0.89647 0.94338 0.93079 0.96251 0.91690 0.91385 0.92954 0.89845 0.92328 0.92318 0.92673 0.92337 0.92235 0.92607 0.92678 0.92272 0.96408 0.91779 0.94038 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.69 11.99 55.49 0.67 -26.02 16 2 C -0.02 -0.53 4.55 -17.43 -0.08 -0.61 16 3 Si 1.04 25.43 30.05 -169.99 -5.11 20.32 16 4 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.35 -9.75 9.47 -15.06 -0.14 -9.89 16 8 H 0.06 1.78 8.02 -52.48 -0.42 1.36 16 9 N -0.58 -14.46 2.76 -175.23 -0.48 -14.94 16 10 C 0.13 3.13 5.30 -4.99 -0.03 3.10 16 11 C -0.13 -2.73 5.09 -30.03 -0.15 -2.88 16 12 C 0.06 1.18 5.49 -5.68 -0.03 1.15 16 13 N -0.52 -9.52 3.47 -235.11 -0.82 -10.34 16 14 C 0.06 0.92 4.16 -3.82 -0.02 0.91 16 15 C -0.08 -1.14 2.10 -90.62 -0.19 -1.33 16 16 C -0.10 -1.62 5.09 -26.73 -0.14 -1.76 16 17 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 18 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 20 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 21 C 0.03 0.55 5.32 -2.23 -0.01 0.54 16 22 C 0.16 3.38 5.14 -5.03 -0.03 3.36 16 23 H 0.28 8.10 4.98 -40.82 -0.20 7.90 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.50 5.59 -51.93 -0.29 2.21 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 2.08 5.65 -51.93 -0.29 1.78 16 28 H 0.04 0.70 6.13 -51.93 -0.32 0.38 16 29 H 0.05 0.83 7.44 -51.93 -0.39 0.44 16 30 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 31 H 0.06 0.97 7.81 -51.93 -0.41 0.57 16 32 H 0.07 1.06 6.66 -51.93 -0.35 0.71 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.64 7.75 -51.93 -0.40 1.23 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.30 7.90 -51.93 -0.41 -0.11 16 44 H 0.06 1.29 7.19 -51.93 -0.37 0.91 16 45 H 0.04 0.89 7.95 -51.93 -0.41 0.47 16 46 H 0.02 0.46 6.89 -51.93 -0.36 0.11 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -28.68 331.79 -10.65 -39.33 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.48 Total: 0.28 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.43 Total: -13.63 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.63 Total: -51.30 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.11 Total: 20.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.68 -10.65 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054318893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.448 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds