Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47196 * 269.99913 * 3 2 1 5 5 H 1.48497 * 109.47239 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.46864 * 149.99963 * 3 2 1 7 7 C 1.37883 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47361 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47300 * 180.02562 * 11 10 9 13 13 C 1.48532 * 110.99853 * 307.39759 * 12 11 10 14 14 C 1.55109 * 103.28206 * 200.33574 * 13 12 11 15 15 C 1.54589 * 102.84671 * 37.30657 * 14 13 12 16 16 H 1.09003 * 110.31260 * 97.11622 * 15 14 13 17 17 N 1.46906 * 110.30836 * 219.18533 * 15 14 13 18 18 C 1.46853 * 110.99832 * 56.42163 * 17 15 14 19 19 C 1.53033 * 109.52262 * 174.16246 * 18 17 15 20 20 C 1.53112 * 109.27992 * 59.17361 * 19 18 17 21 21 C 1.53120 * 109.16707 * 302.34582 * 20 19 18 22 22 C 1.46844 * 110.99887 * 292.21039 * 17 15 14 23 23 C 1.47907 * 111.00033 * 190.00404 * 12 11 10 24 24 H 0.96992 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47533 * 60.00627 * 9 7 2 26 26 H 1.08999 * 109.47180 * 299.99752 * 9 7 2 27 27 H 1.09004 * 109.47101 * 60.00196 * 10 9 7 28 28 H 1.08998 * 109.47370 * 300.00230 * 10 9 7 29 29 H 1.09000 * 109.46772 * 59.99608 * 11 10 9 30 30 H 1.08998 * 109.47198 * 300.00497 * 11 10 9 31 31 H 1.09001 * 110.67077 * 318.71032 * 13 12 11 32 32 H 1.08999 * 110.66979 * 81.67970 * 13 12 11 33 33 H 1.09003 * 110.70566 * 278.99584 * 14 13 12 34 34 H 1.09004 * 110.81125 * 155.66394 * 14 13 12 35 35 H 1.09001 * 109.46125 * 294.17808 * 18 17 15 36 36 H 1.09003 * 109.46462 * 54.14202 * 18 17 15 37 37 H 1.09007 * 109.50330 * 299.23709 * 19 18 17 38 38 H 1.08999 * 109.53502 * 179.13924 * 19 18 17 39 39 H 1.09001 * 109.52454 * 182.44025 * 20 19 18 40 40 H 1.08999 * 109.57341 * 62.28839 * 20 19 18 41 41 H 1.08996 * 109.49890 * 297.71825 * 21 20 19 42 42 H 1.08994 * 109.50831 * 177.59288 * 21 20 19 43 43 H 1.09000 * 109.46299 * 305.85220 * 22 17 15 44 44 H 1.08998 * 109.46010 * 65.83553 * 22 17 15 45 45 H 1.09006 * 109.91632 * 26.48546 * 23 12 11 46 46 H 1.09002 * 109.91521 * 265.19626 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4350 -6.1036 0.0007 13 6 3.4210 -5.9614 -1.1009 14 6 3.9655 -7.4028 -1.2801 15 6 2.7104 -8.2754 -1.0494 16 1 2.2602 -8.5503 -2.0033 17 7 3.0607 -9.4805 -0.2858 18 6 3.7012 -9.1287 0.9880 19 6 3.9191 -10.3957 1.8180 20 6 4.8025 -11.3689 1.0327 21 6 4.1361 -11.6813 -0.3100 22 6 3.9119 -10.3768 -1.0784 23 6 1.7459 -7.3903 -0.2385 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8720 -3.6044 -0.8905 29 1 0.8534 -5.0451 -0.8896 30 1 0.8540 -5.0446 0.8903 31 1 2.9320 -5.6202 -2.0134 32 1 4.2206 -5.2778 -0.8158 33 1 4.7298 -7.6215 -0.5344 34 1 4.3556 -7.5469 -2.2877 35 1 4.6622 -8.6531 0.7921 36 1 3.0606 -8.4395 1.5385 37 1 2.9571 -10.8644 2.0260 38 1 4.4083 -10.1367 2.7570 39 1 4.9247 -12.2904 1.6018 40 1 5.7787 -10.9164 0.8583 41 1 3.1776 -12.1701 -0.1354 42 1 4.7807 -12.3401 -0.8918 43 1 3.4245 -10.5944 -2.0288 44 1 4.8720 -9.8955 -1.2644 45 1 0.8307 -7.2215 -0.8061 46 1 1.5131 -7.8693 0.7126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062980000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -10.330775 kcal Electronic energy + Delta-G solvation = -20772.527605 eV Core-core repulsion = 17888.927706 eV Total energy + Delta-G solvation = -2883.599899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12010 -37.79238 -34.62184 -33.18493 -31.55640 -31.00166 -29.72314 -28.19018 -25.97924 -23.98583 -23.32220 -22.93645 -21.38436 -20.31182 -19.81828 -19.04824 -16.72402 -16.40123 -15.61703 -14.94470 -14.85975 -14.80148 -14.50704 -14.32527 -13.98154 -13.55684 -13.50797 -12.75623 -12.62030 -12.51921 -12.17323 -11.97361 -11.67763 -11.47349 -11.36290 -11.28515 -11.10914 -10.87960 -10.80516 -10.71982 -10.53506 -10.48013 -10.38645 -10.37032 -9.65621 -9.31668 -9.03261 -8.35350 -8.32503 -8.11979 -5.97897 -3.99961 3.33057 3.39147 3.42942 3.71825 4.27666 4.48049 4.58206 4.59064 4.70346 4.76693 4.84145 5.02177 5.14942 5.22720 5.34071 5.37810 5.38081 5.39680 5.47280 5.56986 5.64729 5.69091 5.74868 5.76475 5.82236 5.84736 5.88091 5.93420 6.03546 6.06561 6.13251 6.15155 6.22728 6.33354 6.70062 6.80551 6.98568 7.03010 7.07665 7.26073 7.41350 7.70317 7.85521 8.02623 8.45891 9.07233 9.63883 11.13607 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.003029 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.585621 B = 9240.353940 C = 9263.462644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.048 3.952 12 N -0.517 5.517 13 C 0.041 3.959 14 C -0.160 4.160 15 C 0.077 3.923 16 H 0.085 0.915 17 N -0.528 5.528 18 C 0.050 3.950 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.116 4.116 22 C 0.055 3.945 23 C 0.039 3.961 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -23.245 -1.174 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.080 4.080 12 N -0.242 5.242 13 C -0.087 4.087 14 C -0.199 4.199 15 C -0.033 4.033 16 H 0.103 0.897 17 N -0.251 5.251 18 C -0.078 4.078 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.658 -23.379 -0.543 24.608 hybrid contribution 0.696 1.480 -1.067 1.953 sum 8.354 -21.899 -1.610 23.494 Atomic orbital electron populations 1.69964 1.06059 1.26552 1.51028 1.25031 0.94844 0.99247 0.95401 0.86600 0.79884 0.83510 0.78055 1.20719 1.21219 1.19859 1.21253 0.93014 0.91076 1.50330 0.92735 1.19067 0.94008 0.91368 0.97097 1.21695 0.99225 0.92977 1.00667 1.22467 0.94098 0.91054 1.00358 1.64880 1.14915 1.01823 1.42559 1.23139 0.96270 0.96000 0.93336 1.23239 0.98893 0.96234 1.01580 1.22593 0.95055 0.89085 0.96538 0.89710 1.62147 1.43630 1.14878 1.04489 1.22176 0.98174 0.96942 0.90469 1.21601 1.00230 0.95810 0.97875 1.21581 0.98672 0.99323 0.96356 1.21577 1.01047 0.96651 0.96100 1.22041 0.95369 0.93419 0.96475 1.22956 0.95411 0.90405 1.00158 0.93035 0.96859 0.96564 0.92673 0.93479 0.95163 0.91025 0.93668 0.89903 0.90414 0.91483 0.94411 0.89468 0.91287 0.91666 0.92081 0.92438 0.91193 0.91861 0.91106 0.94874 0.93529 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.28 4.81 -26.73 -0.13 -2.41 16 11 C 0.05 0.85 5.03 -3.83 -0.02 0.84 16 12 N -0.52 -7.92 5.40 -230.34 -1.24 -9.17 16 13 C 0.04 0.58 5.11 -1.80 -0.01 0.57 16 14 C -0.16 -1.84 5.58 -24.78 -0.14 -1.97 16 15 C 0.08 0.86 3.08 -66.36 -0.20 0.66 16 16 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 17 N -0.53 -5.53 4.62 -225.06 -1.04 -6.58 16 18 C 0.05 0.52 4.73 -3.83 -0.02 0.51 16 19 C -0.12 -1.04 6.09 -26.66 -0.16 -1.20 16 20 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 21 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 22 C 0.05 0.49 5.19 -3.83 -0.02 0.47 16 23 C 0.04 0.51 5.74 -2.75 -0.02 0.50 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.98 6.79 -51.93 -0.35 0.62 16 29 H 0.03 0.55 7.81 -51.93 -0.41 0.14 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.66 8.00 -51.93 -0.42 0.25 16 32 H 0.08 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.08 0.92 5.64 -51.93 -0.29 0.62 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.42 6.08 -51.93 -0.32 0.11 16 36 H 0.09 1.04 6.18 -51.93 -0.32 0.72 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.03 0.31 7.57 -51.93 -0.39 -0.09 16 45 H 0.05 0.62 7.57 -51.93 -0.39 0.23 16 46 H 0.09 1.14 6.46 -51.93 -0.34 0.81 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -29.77 342.72 -11.65 -41.42 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.66 Total: -3.61 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.59 Total: -17.54 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -1.55 Total: -42.37 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.77 -11.65 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062980000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.088 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds