Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47196 * 269.99913 * 3 2 1 5 5 H 1.48497 * 109.47239 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.46864 * 149.99963 * 3 2 1 7 7 C 1.37883 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47361 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47300 * 180.02562 * 11 10 9 13 13 C 1.48532 * 110.99853 * 307.39759 * 12 11 10 14 14 C 1.55109 * 103.28206 * 200.33574 * 13 12 11 15 15 C 1.54589 * 102.84671 * 37.30657 * 14 13 12 16 16 H 1.09003 * 110.31260 * 97.11622 * 15 14 13 17 17 N 1.46906 * 110.30836 * 219.18533 * 15 14 13 18 18 C 1.46853 * 110.99832 * 56.42163 * 17 15 14 19 19 C 1.53033 * 109.52262 * 174.16246 * 18 17 15 20 20 C 1.53112 * 109.27992 * 59.17361 * 19 18 17 21 21 C 1.53120 * 109.16707 * 302.34582 * 20 19 18 22 22 C 1.46844 * 110.99887 * 292.21039 * 17 15 14 23 23 C 1.47907 * 111.00033 * 190.00404 * 12 11 10 24 24 H 0.96992 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47533 * 60.00627 * 9 7 2 26 26 H 1.08999 * 109.47180 * 299.99752 * 9 7 2 27 27 H 1.09004 * 109.47101 * 60.00196 * 10 9 7 28 28 H 1.08998 * 109.47370 * 300.00230 * 10 9 7 29 29 H 1.09000 * 109.46772 * 59.99608 * 11 10 9 30 30 H 1.08998 * 109.47198 * 300.00497 * 11 10 9 31 31 H 1.09001 * 110.67077 * 318.71032 * 13 12 11 32 32 H 1.08999 * 110.66979 * 81.67970 * 13 12 11 33 33 H 1.09003 * 110.70566 * 278.99584 * 14 13 12 34 34 H 1.09004 * 110.81125 * 155.66394 * 14 13 12 35 35 H 1.09001 * 109.46125 * 294.17808 * 18 17 15 36 36 H 1.09003 * 109.46462 * 54.14202 * 18 17 15 37 37 H 1.09007 * 109.50330 * 299.23709 * 19 18 17 38 38 H 1.08999 * 109.53502 * 179.13924 * 19 18 17 39 39 H 1.09001 * 109.52454 * 182.44025 * 20 19 18 40 40 H 1.08999 * 109.57341 * 62.28839 * 20 19 18 41 41 H 1.08996 * 109.49890 * 297.71825 * 21 20 19 42 42 H 1.08994 * 109.50831 * 177.59288 * 21 20 19 43 43 H 1.09000 * 109.46299 * 305.85220 * 22 17 15 44 44 H 1.08998 * 109.46010 * 65.83553 * 22 17 15 45 45 H 1.09006 * 109.91632 * 26.48546 * 23 12 11 46 46 H 1.09002 * 109.91521 * 265.19626 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4350 -6.1036 0.0007 13 6 3.4210 -5.9614 -1.1009 14 6 3.9655 -7.4028 -1.2801 15 6 2.7104 -8.2754 -1.0494 16 1 2.2602 -8.5503 -2.0033 17 7 3.0607 -9.4805 -0.2858 18 6 3.7012 -9.1287 0.9880 19 6 3.9191 -10.3957 1.8180 20 6 4.8025 -11.3689 1.0327 21 6 4.1361 -11.6813 -0.3100 22 6 3.9119 -10.3768 -1.0784 23 6 1.7459 -7.3903 -0.2385 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8720 -3.6044 -0.8905 29 1 0.8534 -5.0451 -0.8896 30 1 0.8540 -5.0446 0.8903 31 1 2.9320 -5.6202 -2.0134 32 1 4.2206 -5.2778 -0.8158 33 1 4.7298 -7.6215 -0.5344 34 1 4.3556 -7.5469 -2.2877 35 1 4.6622 -8.6531 0.7921 36 1 3.0606 -8.4395 1.5385 37 1 2.9571 -10.8644 2.0260 38 1 4.4083 -10.1367 2.7570 39 1 4.9247 -12.2904 1.6018 40 1 5.7787 -10.9164 0.8583 41 1 3.1776 -12.1701 -0.1354 42 1 4.7807 -12.3401 -0.8918 43 1 3.4245 -10.5944 -2.0288 44 1 4.8720 -9.8955 -1.2644 45 1 0.8307 -7.2215 -0.8061 46 1 1.5131 -7.8693 0.7126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062980000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -28.894792 kcal Electronic energy + Delta-G solvation = -20773.332601 eV Core-core repulsion = 17888.927706 eV Total energy + Delta-G solvation = -2884.404895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06498 -38.81322 -36.18078 -34.75108 -33.12929 -31.72891 -31.01692 -29.39903 -27.65555 -25.11014 -24.46954 -23.92268 -22.85802 -21.30639 -21.22846 -19.95540 -18.52255 -17.63381 -16.87946 -16.49555 -16.22070 -15.76971 -15.69946 -15.29417 -14.92185 -14.68540 -14.47271 -14.24520 -13.97187 -13.82288 -13.32150 -13.20989 -13.05005 -12.86599 -12.69935 -12.49994 -12.39206 -12.26005 -12.13590 -12.00110 -11.67068 -11.54199 -11.52348 -11.38250 -11.19462 -11.16948 -11.05120 -10.56920 -9.37859 -9.18041 -8.21627 -6.32985 1.38733 1.40423 1.51769 2.39708 2.86797 3.09640 3.11364 3.60546 3.75167 3.90786 4.03443 4.08617 4.13709 4.22795 4.28534 4.30917 4.39413 4.47069 4.55576 4.64935 4.67703 4.69689 4.74402 4.83433 4.84544 4.91324 4.93720 4.98610 5.07017 5.08161 5.09886 5.12945 5.20321 5.23127 5.27497 5.36627 5.49349 5.52288 5.71223 5.83260 5.95573 6.03723 6.16846 6.24075 6.27410 6.83648 7.36301 8.90457 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.003029 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.585621 B = 9240.353940 C = 9263.462644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.060 3.940 12 N -0.523 5.523 13 C 0.037 3.963 14 C -0.147 4.147 15 C 0.083 3.917 16 H 0.095 0.905 17 N -0.531 5.531 18 C 0.053 3.947 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.113 4.113 22 C 0.053 3.947 23 C 0.040 3.960 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.573 -24.265 -1.667 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.068 4.068 12 N -0.247 5.247 13 C -0.092 4.092 14 C -0.187 4.187 15 C -0.027 4.027 16 H 0.113 0.887 17 N -0.255 5.255 18 C -0.075 4.075 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.074 4.074 23 C -0.088 4.088 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.234 -24.424 -1.038 26.132 hybrid contribution 0.180 1.765 -0.901 1.990 sum 9.414 -22.659 -1.939 24.613 Atomic orbital electron populations 1.70096 1.07827 1.27830 1.51663 1.26005 0.95798 1.03434 0.94664 0.85430 0.78658 0.78313 0.78558 1.19653 1.20606 1.18765 1.21682 0.93488 0.92395 1.50593 0.92317 1.18961 0.94362 0.93084 0.94699 1.21426 0.98014 0.92840 1.00560 1.22194 0.94024 0.90587 1.00019 1.64827 1.14589 1.01766 1.43506 1.23176 0.95674 0.97756 0.92548 1.23159 0.98817 0.94116 1.02573 1.22526 0.94429 0.89133 0.96604 0.88657 1.62166 1.44276 1.14501 1.04573 1.22118 0.97281 0.97448 0.90649 1.21584 1.00421 0.95257 0.98026 1.21576 0.98287 0.99468 0.96407 1.21573 1.01210 0.96190 0.96102 1.22127 0.95057 0.93508 0.96749 1.22962 0.95766 0.89555 1.00504 0.92713 0.99169 0.99045 0.93130 0.93024 0.95441 0.91563 0.94156 0.90793 0.90556 0.89704 0.95054 0.91284 0.91667 0.91155 0.90896 0.92433 0.91565 0.90249 0.90361 0.94893 0.93697 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.90 4.81 30.59 0.15 -3.76 16 11 C 0.06 2.18 5.03 86.30 0.43 2.61 16 12 N -0.52 -15.90 5.40 -882.66 -4.76 -20.66 16 13 C 0.04 1.01 5.11 86.71 0.44 1.45 16 14 C -0.15 -3.13 5.58 31.86 0.18 -2.95 16 15 C 0.08 1.73 3.08 45.79 0.14 1.87 16 16 H 0.10 1.85 8.10 -2.39 -0.02 1.83 16 17 N -0.53 -10.29 4.62 -865.96 -4.00 -14.29 16 18 C 0.05 1.05 4.73 86.32 0.41 1.46 16 19 C -0.12 -1.88 6.09 30.64 0.19 -1.69 16 20 C -0.12 -1.61 6.00 30.67 0.18 -1.43 16 21 C -0.11 -1.48 6.09 30.65 0.19 -1.30 16 22 C 0.05 0.83 5.19 86.33 0.45 1.28 16 23 C 0.04 1.03 5.74 86.44 0.50 1.52 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 2.16 6.79 -2.39 -0.02 2.14 16 29 H 0.03 1.01 7.81 -2.39 -0.02 0.99 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 32 H 0.07 2.16 7.66 -2.39 -0.02 2.14 16 33 H 0.08 1.68 5.64 -2.39 -0.01 1.66 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.52 16 35 H 0.03 0.67 6.08 -2.39 -0.01 0.65 16 36 H 0.07 1.63 6.18 -2.39 -0.01 1.61 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 44 H 0.03 0.53 7.57 -2.39 -0.02 0.51 16 45 H 0.04 1.17 7.57 -2.38 -0.02 1.15 16 46 H 0.08 2.21 6.46 -2.39 -0.02 2.20 16 Total: -1.00 -63.77 342.72 -1.45 -65.22 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.91 Total: 10.89 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.10 Total: -30.54 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -8.48 Total: -92.57 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.77 -1.45 -65.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062980000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.325 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds