Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99804 * 2 1 4 4 H 1.48505 * 109.47193 * 270.00067 * 3 2 1 5 5 H 1.48497 * 109.47508 * 29.99851 * 3 2 1 6 6 H 1.48498 * 109.47221 * 150.00203 * 3 2 1 7 7 C 1.37870 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47456 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47200 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46899 * 179.97438 * 11 10 9 13 13 C 1.48561 * 111.00139 * 279.96958 * 12 11 10 14 14 C 1.54379 * 104.59664 * 200.96111 * 13 12 11 15 15 C 1.54259 * 105.05975 * 23.85298 * 14 13 12 16 16 C 1.48560 * 111.00087 * 164.55353 * 12 11 10 17 17 H 1.09005 * 110.40872 * 40.26104 * 16 12 11 18 18 C 1.52998 * 110.41193 * 277.82065 * 16 12 11 19 19 N 1.46904 * 109.47065 * 170.90993 * 18 16 12 20 20 C 1.48533 * 111.00129 * 59.61560 * 19 18 16 21 21 C 1.54927 * 103.22762 * 159.71916 * 20 19 18 22 22 C 1.54597 * 102.92336 * 322.58553 * 21 20 19 23 23 C 1.47901 * 110.99750 * 177.01005 * 19 18 16 24 24 H 0.96997 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47542 * 59.99316 * 9 7 2 26 26 H 1.09005 * 109.46534 * 299.99410 * 9 7 2 27 27 H 1.09004 * 109.47009 * 59.99404 * 10 9 7 28 28 H 1.09001 * 109.47371 * 299.99892 * 10 9 7 29 29 H 1.09003 * 109.46350 * 60.00453 * 11 10 9 30 30 H 1.08992 * 109.47435 * 300.00356 * 11 10 9 31 31 H 1.09000 * 110.41340 * 319.74369 * 13 12 11 32 32 H 1.09003 * 110.41019 * 82.18321 * 13 12 11 33 33 H 1.09001 * 110.32833 * 264.95840 * 14 13 12 34 34 H 1.09005 * 110.32687 * 142.75065 * 14 13 12 35 35 H 1.08998 * 110.32668 * 241.09875 * 15 14 13 36 36 H 1.09008 * 110.32071 * 118.89750 * 15 14 13 37 37 H 1.09001 * 109.47170 * 290.91347 * 18 16 12 38 38 H 1.09001 * 109.47053 * 50.91137 * 18 16 12 39 39 H 1.08996 * 110.66653 * 278.15657 * 20 19 18 40 40 H 1.09003 * 110.66440 * 41.28632 * 20 19 18 41 41 H 1.09004 * 110.72677 * 204.23074 * 21 20 19 42 42 H 1.09000 * 110.72567 * 80.94257 * 21 20 19 43 43 H 1.09006 * 110.30797 * 263.04107 * 22 21 20 44 44 H 1.09004 * 110.31000 * 140.87631 * 22 21 20 45 45 H 1.09004 * 109.92012 * 333.51178 * 23 19 18 46 46 H 1.09005 * 109.91711 * 94.80751 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 2.9625 -6.3523 -1.3658 14 6 3.4815 -7.8056 -1.3239 15 6 2.6938 -8.4797 -0.1816 16 6 1.7652 -7.3769 0.3705 17 1 0.7821 -7.4389 -0.0962 18 6 1.6436 -7.4937 1.8912 19 7 0.7927 -8.6431 2.2276 20 6 1.3644 -9.9041 1.6897 21 6 0.6817 -10.9976 2.5488 22 6 0.6154 -10.3459 3.9492 23 6 0.7100 -8.8305 3.6923 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6044 -0.8895 29 1 0.8535 -5.0450 -0.8887 30 1 0.8540 -5.0446 0.8913 31 1 2.1668 -6.2539 -2.1043 32 1 3.7774 -5.6639 -1.5898 33 1 4.5496 -7.8202 -1.1071 34 1 3.2796 -8.3072 -2.2704 35 1 3.3753 -8.8251 0.5958 36 1 2.1053 -9.3122 -0.5675 37 1 2.6335 -7.6351 2.3251 38 1 1.1983 -6.5827 2.2911 39 1 1.1070 -10.0250 0.6374 40 1 2.4455 -9.9258 1.8273 41 1 1.2877 -11.9033 2.5733 42 1 -0.3197 -11.2123 2.1756 43 1 1.4534 -10.6789 4.5615 44 1 -0.3295 -10.5890 4.4353 45 1 1.6037 -8.4281 4.1693 46 1 -0.1781 -8.3319 4.0809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066536695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -5.519319 kcal Electronic energy + Delta-G solvation = -20743.365267 eV Core-core repulsion = 17859.974008 eV Total energy + Delta-G solvation = -2883.391259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81501 -38.15290 -34.36054 -32.77868 -32.37280 -30.19069 -29.44202 -28.34283 -26.15023 -24.83222 -22.86122 -21.45467 -20.94682 -20.56541 -20.06012 -19.70962 -16.64379 -16.14014 -16.07843 -15.25494 -15.08846 -14.60299 -14.38507 -14.25298 -13.90519 -13.44257 -13.02738 -12.97101 -12.45790 -12.29410 -12.13159 -11.96184 -11.65548 -11.54951 -11.40908 -11.20346 -11.05919 -10.86338 -10.75027 -10.70390 -10.61902 -10.48106 -10.43927 -10.33885 -9.55986 -9.26348 -9.00937 -8.50426 -8.29822 -8.18562 -5.94961 -3.96788 3.35119 3.41057 3.45075 3.71866 4.32197 4.49427 4.50928 4.57433 4.65180 4.77765 4.79456 4.98138 5.13684 5.25589 5.27624 5.40311 5.40784 5.45326 5.51781 5.55257 5.61219 5.66134 5.71433 5.75333 5.80941 5.88547 5.90970 5.94280 5.98236 6.02335 6.10316 6.21898 6.22654 6.41845 6.72497 6.77106 6.80893 6.97749 7.14260 7.28150 7.45093 7.74480 7.89996 8.06109 8.49716 9.10562 9.66900 11.16540 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.003537 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.285556 B = 7913.585323 C = 8694.089719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.099 4.099 11 C 0.046 3.954 12 N -0.507 5.507 13 C 0.035 3.965 14 C -0.126 4.126 15 C -0.123 4.123 16 C 0.064 3.936 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.518 5.518 20 C 0.028 3.972 21 C -0.127 4.127 22 C -0.131 4.131 23 C 0.035 3.965 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -23.095 3.090 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.082 4.082 12 N -0.231 5.231 13 C -0.093 4.093 14 C -0.164 4.164 15 C -0.160 4.160 16 C -0.045 4.045 17 H 0.077 0.923 18 C -0.066 4.066 19 N -0.242 5.242 20 C -0.099 4.099 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.093 4.093 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.077 -22.693 3.256 23.131 hybrid contribution 0.524 0.781 -0.228 0.968 sum 3.601 -21.912 3.028 22.411 Atomic orbital electron populations 1.69968 1.06045 1.26492 1.51144 1.25028 0.94841 0.99220 0.95461 0.86606 0.79882 0.83541 0.78045 1.20730 1.21263 1.19865 1.21260 0.93041 0.91067 1.50155 0.92709 1.19080 0.94061 0.91459 0.97024 1.21557 0.98984 0.92523 1.00677 1.22479 0.93767 0.91544 1.00399 1.65293 1.32548 1.02741 1.22550 1.23093 0.99704 0.96241 0.90256 1.22331 1.00321 0.95491 0.98258 1.22663 0.97990 0.97381 0.98009 1.22540 0.96643 0.90353 0.94915 0.92327 1.22151 0.95183 0.94029 0.95219 1.64743 1.47329 1.02900 1.09260 1.23564 0.97128 0.89361 0.99880 1.22522 1.01341 0.97605 0.95006 1.22397 1.02112 0.94897 0.97497 1.22846 1.01490 0.96126 0.88792 0.93079 0.96887 0.96665 0.92785 0.93656 0.94908 0.91361 0.93906 0.89984 0.91318 0.91729 0.91349 0.91282 0.94017 0.90120 0.89633 0.93444 0.91319 0.90856 0.91699 0.91104 0.93684 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.15 5.33 -26.73 -0.14 -2.29 16 11 C 0.05 0.83 4.81 -3.83 -0.02 0.82 16 12 N -0.51 -7.91 4.98 -222.14 -1.11 -9.02 16 13 C 0.04 0.49 6.11 -2.18 -0.01 0.48 16 14 C -0.13 -1.39 7.00 -25.35 -0.18 -1.56 16 15 C -0.12 -1.32 4.68 -25.35 -0.12 -1.44 16 16 C 0.06 0.86 2.27 -66.07 -0.15 0.71 16 17 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 18 C 0.06 0.81 4.70 -3.82 -0.02 0.79 16 19 N -0.52 -5.99 5.34 -230.45 -1.23 -7.22 16 20 C 0.03 0.27 4.69 -1.90 -0.01 0.26 16 21 C -0.13 -1.01 7.06 -24.88 -0.18 -1.19 16 22 C -0.13 -1.06 6.93 -25.38 -0.18 -1.23 16 23 C 0.04 0.36 6.70 -2.76 -0.02 0.34 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 29 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 30 H 0.07 1.26 7.01 -51.93 -0.36 0.90 16 31 H 0.04 0.60 7.68 -51.93 -0.40 0.21 16 32 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.72 6.31 -51.93 -0.33 0.39 16 36 H 0.07 0.65 6.29 -51.92 -0.33 0.33 16 37 H 0.04 0.55 7.70 -51.93 -0.40 0.15 16 38 H 0.08 1.18 7.15 -51.93 -0.37 0.81 16 39 H 0.09 0.80 5.98 -51.93 -0.31 0.49 16 40 H 0.05 0.44 6.53 -51.93 -0.34 0.11 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.46 7.69 -51.93 -0.40 0.06 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -30.55 345.52 -11.62 -42.17 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -8.64 Total: -3.68 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.57 Total: -17.75 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -1.60 Total: -43.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.55 -11.62 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066536695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.654 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds