Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99804 * 2 1 4 4 H 1.48505 * 109.47193 * 270.00067 * 3 2 1 5 5 H 1.48497 * 109.47508 * 29.99851 * 3 2 1 6 6 H 1.48498 * 109.47221 * 150.00203 * 3 2 1 7 7 C 1.37870 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00584 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47456 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47200 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46899 * 179.97438 * 11 10 9 13 13 C 1.48561 * 111.00139 * 279.96958 * 12 11 10 14 14 C 1.54379 * 104.59664 * 200.96111 * 13 12 11 15 15 C 1.54259 * 105.05975 * 23.85298 * 14 13 12 16 16 C 1.48560 * 111.00087 * 164.55353 * 12 11 10 17 17 H 1.09005 * 110.40872 * 40.26104 * 16 12 11 18 18 C 1.52998 * 110.41193 * 277.82065 * 16 12 11 19 19 N 1.46904 * 109.47065 * 170.90993 * 18 16 12 20 20 C 1.48533 * 111.00129 * 59.61560 * 19 18 16 21 21 C 1.54927 * 103.22762 * 159.71916 * 20 19 18 22 22 C 1.54597 * 102.92336 * 322.58553 * 21 20 19 23 23 C 1.47901 * 110.99750 * 177.01005 * 19 18 16 24 24 H 0.96997 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47542 * 59.99316 * 9 7 2 26 26 H 1.09005 * 109.46534 * 299.99410 * 9 7 2 27 27 H 1.09004 * 109.47009 * 59.99404 * 10 9 7 28 28 H 1.09001 * 109.47371 * 299.99892 * 10 9 7 29 29 H 1.09003 * 109.46350 * 60.00453 * 11 10 9 30 30 H 1.08992 * 109.47435 * 300.00356 * 11 10 9 31 31 H 1.09000 * 110.41340 * 319.74369 * 13 12 11 32 32 H 1.09003 * 110.41019 * 82.18321 * 13 12 11 33 33 H 1.09001 * 110.32833 * 264.95840 * 14 13 12 34 34 H 1.09005 * 110.32687 * 142.75065 * 14 13 12 35 35 H 1.08998 * 110.32668 * 241.09875 * 15 14 13 36 36 H 1.09008 * 110.32071 * 118.89750 * 15 14 13 37 37 H 1.09001 * 109.47170 * 290.91347 * 18 16 12 38 38 H 1.09001 * 109.47053 * 50.91137 * 18 16 12 39 39 H 1.08996 * 110.66653 * 278.15657 * 20 19 18 40 40 H 1.09003 * 110.66440 * 41.28632 * 20 19 18 41 41 H 1.09004 * 110.72677 * 204.23074 * 21 20 19 42 42 H 1.09000 * 110.72567 * 80.94257 * 21 20 19 43 43 H 1.09006 * 110.30797 * 263.04107 * 22 21 20 44 44 H 1.09004 * 110.31000 * 140.87631 * 22 21 20 45 45 H 1.09004 * 109.92012 * 333.51178 * 23 19 18 46 46 H 1.09005 * 109.91711 * 94.80751 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 2.9625 -6.3523 -1.3658 14 6 3.4815 -7.8056 -1.3239 15 6 2.6938 -8.4797 -0.1816 16 6 1.7652 -7.3769 0.3705 17 1 0.7821 -7.4389 -0.0962 18 6 1.6436 -7.4937 1.8912 19 7 0.7927 -8.6431 2.2276 20 6 1.3644 -9.9041 1.6897 21 6 0.6817 -10.9976 2.5488 22 6 0.6154 -10.3459 3.9492 23 6 0.7100 -8.8305 3.6923 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6044 -0.8895 29 1 0.8535 -5.0450 -0.8887 30 1 0.8540 -5.0446 0.8913 31 1 2.1668 -6.2539 -2.1043 32 1 3.7774 -5.6639 -1.5898 33 1 4.5496 -7.8202 -1.1071 34 1 3.2796 -8.3072 -2.2704 35 1 3.3753 -8.8251 0.5958 36 1 2.1053 -9.3122 -0.5675 37 1 2.6335 -7.6351 2.3251 38 1 1.1983 -6.5827 2.2911 39 1 1.1070 -10.0250 0.6374 40 1 2.4455 -9.9258 1.8273 41 1 1.2877 -11.9033 2.5733 42 1 -0.3197 -11.2123 2.1756 43 1 1.4534 -10.6789 4.5615 44 1 -0.3295 -10.5890 4.4353 45 1 1.6037 -8.4281 4.1693 46 1 -0.1781 -8.3319 4.0809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066536695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -25.115496 kcal Electronic energy + Delta-G solvation = -20744.215020 eV Core-core repulsion = 17859.974008 eV Total energy + Delta-G solvation = -2884.241013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80792 -39.12229 -36.19754 -34.34816 -33.54502 -31.80691 -30.27662 -29.25466 -27.96152 -25.88163 -24.60457 -22.60913 -21.80407 -21.71905 -21.17197 -21.04328 -18.52628 -17.42465 -16.92842 -16.56627 -16.24813 -16.10312 -16.02200 -15.27569 -14.93263 -14.46068 -14.43743 -14.20706 -13.92063 -13.53325 -13.47981 -13.15674 -12.88732 -12.86641 -12.55418 -12.42533 -12.36798 -12.27110 -12.17951 -12.02915 -11.68316 -11.60708 -11.47887 -11.41402 -11.34544 -11.21077 -11.08542 -10.56559 -9.47973 -9.36684 -8.21002 -6.32492 1.38833 1.40771 1.52195 2.40052 2.72174 3.11739 3.34505 3.60115 3.70365 3.79047 3.87151 4.05193 4.09096 4.18520 4.26511 4.35897 4.38144 4.40797 4.51011 4.62350 4.66435 4.68484 4.71256 4.75392 4.91112 4.95127 4.95987 5.00359 5.02151 5.05178 5.07640 5.10417 5.17057 5.23127 5.27409 5.29936 5.33992 5.50430 5.71184 5.84032 5.91098 5.96259 6.03170 6.16041 6.26792 6.83973 7.36727 8.91101 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.003537 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.285556 B = 7913.585323 C = 8694.089719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.082 4.082 11 C 0.060 3.940 12 N -0.516 5.516 13 C 0.028 3.972 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.065 3.935 17 H 0.046 0.954 18 C 0.071 3.929 19 N -0.532 5.532 20 C 0.026 3.974 21 C -0.123 4.123 22 C -0.127 4.127 23 C 0.030 3.970 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.010 1.010 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.041 0.959 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -24.591 2.930 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.068 4.068 12 N -0.240 5.240 13 C -0.100 4.100 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.043 4.043 17 H 0.064 0.936 18 C -0.058 4.058 19 N -0.257 5.257 20 C -0.101 4.101 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.098 4.098 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.548 -24.214 3.094 24.831 hybrid contribution 0.020 1.232 -0.167 1.243 sum 4.569 -22.982 2.928 23.614 Atomic orbital electron populations 1.70103 1.07840 1.27813 1.51683 1.26013 0.95810 1.03458 0.94654 0.85417 0.78642 0.78238 0.78576 1.19625 1.20581 1.18752 1.21675 0.93488 0.92360 1.50571 0.92317 1.18970 0.94378 0.93202 0.94577 1.21285 0.97786 0.92548 1.00420 1.22148 0.93616 0.91295 0.99750 1.65226 1.31809 1.03000 1.23955 1.23194 0.99345 0.98423 0.89037 1.22319 1.00649 0.93222 0.99374 1.22640 0.97638 0.96794 0.98055 1.22569 0.96589 0.90066 0.95093 0.93561 1.21980 0.95049 0.93858 0.94895 1.64721 1.47317 1.03392 1.10284 1.23633 0.97507 0.88642 1.00282 1.22531 1.01493 0.97761 0.94273 1.22393 1.03057 0.93039 0.97981 1.22907 1.00977 0.97887 0.88000 0.92726 0.99260 0.99187 0.93231 0.93425 0.95504 0.92173 0.94352 0.90659 0.90466 0.89655 0.90578 0.89293 0.94137 0.92750 0.89321 0.92934 0.89343 0.90994 0.90535 0.90370 0.94032 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.48 13.29 21.44 0.28 -58.20 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -32.25 9.11 25.60 0.23 -32.02 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.47 4.97 29.85 0.15 1.61 16 10 C -0.08 -3.67 5.33 30.59 0.16 -3.51 16 11 C 0.06 2.28 4.81 86.30 0.42 2.69 16 12 N -0.52 -16.07 4.98 -856.73 -4.27 -20.34 16 13 C 0.03 0.75 6.11 86.45 0.53 1.28 16 14 C -0.12 -2.29 7.00 31.49 0.22 -2.07 16 15 C -0.11 -2.18 4.68 31.49 0.15 -2.03 16 16 C 0.07 1.70 2.27 45.06 0.10 1.81 16 17 H 0.05 1.33 8.00 -2.38 -0.02 1.31 16 18 C 0.07 1.85 4.70 86.30 0.41 2.25 16 19 N -0.53 -11.99 5.34 -883.02 -4.72 -16.71 16 20 C 0.03 0.44 4.69 86.65 0.41 0.85 16 21 C -0.12 -1.65 7.06 31.80 0.22 -1.43 16 22 C -0.13 -1.81 6.93 31.47 0.22 -1.59 16 23 C 0.03 0.60 6.70 86.45 0.58 1.18 16 24 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 27 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.05 2.08 7.77 -2.39 -0.02 2.06 16 29 H 0.03 1.03 7.64 -2.39 -0.02 1.01 16 30 H 0.06 2.34 7.01 -2.39 -0.02 2.33 16 31 H 0.04 1.06 7.68 -2.39 -0.02 1.05 16 32 H 0.07 2.11 8.01 -2.39 -0.02 2.09 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.38 6.31 -2.39 -0.02 1.36 16 36 H 0.09 1.39 6.29 -2.38 -0.01 1.38 16 37 H 0.04 1.04 7.70 -2.39 -0.02 1.03 16 38 H 0.05 1.67 7.15 -2.39 -0.02 1.65 16 39 H 0.09 1.43 5.98 -2.39 -0.01 1.41 16 40 H 0.05 0.84 6.53 -2.39 -0.02 0.83 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.04 0.84 7.69 -2.38 -0.02 0.82 16 46 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -66.51 345.52 -1.51 -68.02 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.91 Total: 10.38 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 4.25 Total: -30.62 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -8.70 Total: -95.25 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.51 -1.51 -68.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066536695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.906 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds