Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99970 * 3 2 1 5 5 H 1.48496 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99927 * 3 2 1 7 7 C 1.37881 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47292 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46819 * 179.97438 * 11 10 9 13 13 C 1.47442 * 111.00163 * 75.94467 * 12 11 10 14 14 C 1.54319 * 107.23150 * 123.25199 * 13 12 11 15 15 C 1.55142 * 103.02051 * 22.28425 * 14 13 12 16 16 C 1.47849 * 110.99392 * 196.78583 * 12 11 10 17 17 H 1.08991 * 110.37438 * 332.46815 * 16 12 11 18 18 C 1.53007 * 110.37238 * 94.81117 * 16 12 11 19 19 N 1.46896 * 109.46996 * 184.28668 * 18 16 12 20 20 C 1.48537 * 111.00155 * 59.21091 * 19 18 16 21 21 C 1.54932 * 103.22598 * 159.72011 * 20 19 18 22 22 C 1.54594 * 102.92526 * 322.58573 * 21 20 19 23 23 C 1.47899 * 110.99856 * 176.60853 * 19 18 16 24 24 H 0.97002 * 119.99785 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47305 * 59.99823 * 9 7 2 26 26 H 1.08996 * 109.47185 * 299.99724 * 9 7 2 27 27 H 1.09006 * 109.46857 * 299.99939 * 10 9 7 28 28 H 1.09002 * 109.47311 * 59.99750 * 10 9 7 29 29 H 1.08997 * 109.46701 * 300.00106 * 11 10 9 30 30 H 1.09002 * 109.47027 * 59.99723 * 11 10 9 31 31 H 1.08991 * 109.88893 * 242.65837 * 13 12 11 32 32 H 1.09000 * 109.88557 * 3.69024 * 13 12 11 33 33 H 1.09004 * 110.70606 * 140.66923 * 14 13 12 34 34 H 1.08996 * 110.70660 * 263.72697 * 14 13 12 35 35 H 1.09004 * 110.98785 * 82.43987 * 15 14 13 36 36 H 1.08993 * 110.99223 * 206.21400 * 15 14 13 37 37 H 1.08994 * 109.46850 * 304.28682 * 18 16 12 38 38 H 1.08994 * 109.47109 * 64.28585 * 18 16 12 39 39 H 1.08993 * 110.66686 * 278.15596 * 20 19 18 40 40 H 1.08999 * 110.66607 * 41.28676 * 20 19 18 41 41 H 1.09007 * 110.72438 * 204.23023 * 21 20 19 42 42 H 1.09003 * 110.72343 * 80.94766 * 21 20 19 43 43 H 1.09000 * 110.31419 * 263.04147 * 22 21 20 44 44 H 1.09002 * 110.31209 * 140.86948 * 22 21 20 45 45 H 1.08999 * 109.91743 * 333.50473 * 23 19 18 46 46 H 1.08998 * 109.91920 * 94.80593 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 7 2.4347 -6.1037 0.0031 13 6 3.0321 -6.2874 1.3385 14 6 2.7454 -7.7405 1.7716 15 6 2.4974 -8.4649 0.4223 16 6 1.7745 -7.3653 -0.3949 17 1 0.7155 -7.3366 -0.1389 18 6 1.9549 -7.6108 -1.8944 19 7 1.2067 -8.8124 -2.2872 20 6 -0.2396 -8.6618 -1.9839 21 6 -0.9060 -9.7165 -2.9026 22 6 -0.0530 -9.6424 -4.1897 23 6 1.2915 -9.0359 -3.7468 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8725 -3.6047 -0.8878 28 1 2.8712 -3.6040 0.8923 29 1 0.8531 -5.0441 0.8922 30 1 0.8538 -5.0455 -0.8877 31 1 4.1081 -6.1205 1.2895 32 1 2.5808 -5.5913 2.0455 33 1 3.6073 -8.1668 2.2852 34 1 1.8597 -7.7862 2.4051 35 1 3.4393 -8.7460 -0.0489 36 1 1.8563 -9.3358 0.5587 37 1 1.5805 -6.7516 -2.4508 38 1 3.0128 -7.7533 -2.1146 39 1 -0.4380 -8.8844 -0.9356 40 1 -0.5833 -7.6589 -2.2371 41 1 -1.9418 -9.4476 -3.1104 42 1 -0.8462 -10.7093 -2.4567 43 1 -0.5341 -8.9986 -4.9261 44 1 0.0994 -10.6404 -4.6007 45 1 1.4578 -8.0880 -4.2585 46 1 2.1028 -9.7288 -3.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066536696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = -11.451366 kcal Electronic energy + Delta-G solvation = -20745.704332 eV Core-core repulsion = 17862.055840 eV Total energy + Delta-G solvation = -2883.648492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63507 -38.24801 -34.33999 -32.77330 -32.27254 -30.02703 -29.26680 -28.58401 -26.11344 -24.63573 -22.81913 -21.65851 -21.11459 -20.83396 -19.60264 -19.49063 -16.58369 -16.24811 -16.10758 -15.37579 -15.14377 -14.44946 -14.29499 -14.12827 -13.84139 -13.46323 -13.06270 -12.76111 -12.44458 -12.27866 -12.17215 -12.00286 -11.57891 -11.48191 -11.31354 -11.21729 -11.07971 -10.93613 -10.77628 -10.68896 -10.59914 -10.58029 -10.47896 -10.38808 -9.60778 -9.27948 -9.03503 -8.49965 -8.31269 -8.01724 -5.96792 -3.98659 3.35626 3.39448 3.42472 3.72909 4.32782 4.48909 4.53470 4.58538 4.74933 4.79189 4.84192 5.09376 5.15591 5.26987 5.32037 5.38868 5.45138 5.47504 5.53462 5.62989 5.66844 5.70330 5.77706 5.80573 5.83220 5.88504 5.92365 5.97022 6.02009 6.05433 6.10854 6.25162 6.35266 6.37955 6.73298 6.79348 6.82411 6.96704 7.17690 7.35272 7.48790 7.71970 7.87296 8.03939 8.47801 9.08402 9.65070 11.14680 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.003777 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.612589 B = 7412.144651 C = 8270.414984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.054 3.946 12 N -0.528 5.528 13 C 0.045 3.955 14 C -0.146 4.146 15 C -0.108 4.108 16 C 0.074 3.926 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.516 5.516 20 C 0.031 3.969 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.036 3.964 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -21.395 -3.325 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.074 4.074 12 N -0.252 5.252 13 C -0.083 4.083 14 C -0.184 4.184 15 C -0.146 4.146 16 C -0.035 4.035 17 H 0.070 0.930 18 C -0.065 4.065 19 N -0.241 5.241 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.521 -21.558 -3.394 21.877 hybrid contribution -0.573 1.630 0.134 1.733 sum 0.948 -19.928 -3.260 20.215 Atomic orbital electron populations 1.69960 1.06062 1.26616 1.51065 1.25030 0.94842 0.99226 0.95408 0.86659 0.79578 0.83140 0.78635 1.20231 1.21326 1.20252 1.21226 0.93029 0.91058 1.50309 0.92724 1.19072 0.94054 0.91510 0.96935 1.21597 0.98999 0.92536 1.00768 1.22459 0.93534 0.91529 0.99841 1.63380 1.32601 1.03539 1.25716 1.22793 1.00566 0.95399 0.89495 1.22836 1.01544 0.96306 0.97733 1.22575 1.00691 0.97014 0.94369 1.22490 0.96890 0.89660 0.94414 0.92985 1.22165 0.99178 0.90106 0.95034 1.64754 1.08829 1.36387 1.14090 1.23257 0.88262 0.97931 1.00228 1.22474 0.98619 0.99699 0.95364 1.22397 0.95449 1.01262 0.97819 1.22842 0.98027 1.00060 0.88324 0.93023 0.96786 0.96916 0.92760 0.93543 0.95146 0.91926 0.90807 0.92382 0.91114 0.91896 0.90840 0.91069 0.94286 0.90092 0.90152 0.93571 0.91201 0.90883 0.91587 0.91165 0.93635 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.18 5.27 -26.73 -0.14 -2.32 16 11 C 0.05 0.98 4.59 -3.82 -0.02 0.96 16 12 N -0.53 -8.24 4.77 -223.38 -1.07 -9.30 16 13 C 0.05 0.64 6.31 -2.84 -0.02 0.62 16 14 C -0.15 -1.67 6.94 -24.91 -0.17 -1.84 16 15 C -0.11 -1.25 6.36 -24.59 -0.16 -1.40 16 16 C 0.07 0.98 2.23 -66.18 -0.15 0.84 16 17 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 18 C 0.06 0.81 4.58 -3.82 -0.02 0.80 16 19 N -0.52 -5.80 5.20 -230.46 -1.20 -7.00 16 20 C 0.03 0.33 5.40 -1.90 -0.01 0.32 16 21 C -0.12 -1.07 7.06 -24.87 -0.18 -1.24 16 22 C -0.13 -1.10 6.93 -25.37 -0.18 -1.28 16 23 C 0.04 0.35 6.70 -2.75 -0.02 0.33 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.99 7.58 -51.93 -0.39 0.60 16 29 H 0.03 0.56 7.77 -51.93 -0.40 0.15 16 30 H 0.06 1.15 7.99 -51.93 -0.41 0.73 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.87 7.18 -51.93 -0.37 0.50 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.56 7.98 -51.93 -0.41 0.15 16 38 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 39 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.47 7.68 -51.93 -0.40 0.08 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -30.18 353.83 -11.80 -41.97 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -8.98 Total: -3.71 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -1.60 Total: -17.61 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -1.53 Total: -43.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.18 -11.80 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066536696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.522 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds