Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47089 * 239.99970 * 3 2 1 5 5 H 1.48496 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99927 * 3 2 1 7 7 C 1.37881 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99758 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47292 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46819 * 179.97438 * 11 10 9 13 13 C 1.47442 * 111.00163 * 75.94467 * 12 11 10 14 14 C 1.54319 * 107.23150 * 123.25199 * 13 12 11 15 15 C 1.55142 * 103.02051 * 22.28425 * 14 13 12 16 16 C 1.47849 * 110.99392 * 196.78583 * 12 11 10 17 17 H 1.08991 * 110.37438 * 332.46815 * 16 12 11 18 18 C 1.53007 * 110.37238 * 94.81117 * 16 12 11 19 19 N 1.46896 * 109.46996 * 184.28668 * 18 16 12 20 20 C 1.48537 * 111.00155 * 59.21091 * 19 18 16 21 21 C 1.54932 * 103.22598 * 159.72011 * 20 19 18 22 22 C 1.54594 * 102.92526 * 322.58573 * 21 20 19 23 23 C 1.47899 * 110.99856 * 176.60853 * 19 18 16 24 24 H 0.97002 * 119.99785 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47305 * 59.99823 * 9 7 2 26 26 H 1.08996 * 109.47185 * 299.99724 * 9 7 2 27 27 H 1.09006 * 109.46857 * 299.99939 * 10 9 7 28 28 H 1.09002 * 109.47311 * 59.99750 * 10 9 7 29 29 H 1.08997 * 109.46701 * 300.00106 * 11 10 9 30 30 H 1.09002 * 109.47027 * 59.99723 * 11 10 9 31 31 H 1.08991 * 109.88893 * 242.65837 * 13 12 11 32 32 H 1.09000 * 109.88557 * 3.69024 * 13 12 11 33 33 H 1.09004 * 110.70606 * 140.66923 * 14 13 12 34 34 H 1.08996 * 110.70660 * 263.72697 * 14 13 12 35 35 H 1.09004 * 110.98785 * 82.43987 * 15 14 13 36 36 H 1.08993 * 110.99223 * 206.21400 * 15 14 13 37 37 H 1.08994 * 109.46850 * 304.28682 * 18 16 12 38 38 H 1.08994 * 109.47109 * 64.28585 * 18 16 12 39 39 H 1.08993 * 110.66686 * 278.15596 * 20 19 18 40 40 H 1.08999 * 110.66607 * 41.28676 * 20 19 18 41 41 H 1.09007 * 110.72438 * 204.23023 * 21 20 19 42 42 H 1.09003 * 110.72343 * 80.94766 * 21 20 19 43 43 H 1.09000 * 110.31419 * 263.04147 * 22 21 20 44 44 H 1.09002 * 110.31209 * 140.86948 * 22 21 20 45 45 H 1.08999 * 109.91743 * 333.50473 * 23 19 18 46 46 H 1.08998 * 109.91920 * 94.80593 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 7 2.4347 -6.1037 0.0031 13 6 3.0321 -6.2874 1.3385 14 6 2.7454 -7.7405 1.7716 15 6 2.4974 -8.4649 0.4223 16 6 1.7745 -7.3653 -0.3949 17 1 0.7155 -7.3366 -0.1389 18 6 1.9549 -7.6108 -1.8944 19 7 1.2067 -8.8124 -2.2872 20 6 -0.2396 -8.6618 -1.9839 21 6 -0.9060 -9.7165 -2.9026 22 6 -0.0530 -9.6424 -4.1897 23 6 1.2915 -9.0359 -3.7468 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8725 -3.6047 -0.8878 28 1 2.8712 -3.6040 0.8923 29 1 0.8531 -5.0441 0.8922 30 1 0.8538 -5.0455 -0.8877 31 1 4.1081 -6.1205 1.2895 32 1 2.5808 -5.5913 2.0455 33 1 3.6073 -8.1668 2.2852 34 1 1.8597 -7.7862 2.4051 35 1 3.4393 -8.7460 -0.0489 36 1 1.8563 -9.3358 0.5587 37 1 1.5805 -6.7516 -2.4508 38 1 3.0128 -7.7533 -2.1146 39 1 -0.4380 -8.8844 -0.9356 40 1 -0.5833 -7.6589 -2.2371 41 1 -1.9418 -9.4476 -3.1104 42 1 -0.8462 -10.7093 -2.4567 43 1 -0.5341 -8.9986 -4.9261 44 1 0.0994 -10.6404 -4.6007 45 1 1.4578 -8.0880 -4.2585 46 1 2.1028 -9.7288 -3.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066536696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = -30.014293 kcal Electronic energy + Delta-G solvation = -20746.509281 eV Core-core repulsion = 17862.055840 eV Total energy + Delta-G solvation = -2884.453440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67440 -39.22546 -36.19415 -34.32762 -33.51814 -31.64719 -30.14518 -29.48747 -27.95550 -25.74402 -24.54934 -22.64798 -22.36750 -21.72602 -21.11877 -20.55095 -18.52076 -17.49309 -17.02740 -16.64007 -16.35343 -16.29948 -15.47870 -15.25665 -14.99692 -14.63254 -14.34829 -13.99673 -13.86913 -13.74898 -13.42281 -13.22397 -12.85268 -12.83760 -12.62637 -12.42559 -12.30402 -12.21529 -12.05584 -12.03017 -11.96729 -11.61412 -11.53872 -11.44399 -11.41250 -11.37437 -11.08674 -10.57012 -9.44255 -9.27749 -8.21902 -6.33395 1.38428 1.42039 1.50025 2.39438 2.69700 3.10870 3.31257 3.68916 3.72640 3.75551 3.83942 4.05982 4.10031 4.19569 4.23416 4.32535 4.35163 4.41494 4.47520 4.62627 4.67300 4.69787 4.76410 4.79792 4.91238 4.92191 4.97067 4.98431 5.00694 5.04104 5.05978 5.13141 5.17245 5.20035 5.24323 5.32158 5.39163 5.49529 5.70261 5.82747 5.90212 5.97561 6.11079 6.17023 6.26611 6.82694 7.35832 8.89932 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.003777 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.612589 B = 7412.144651 C = 8270.414984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.084 4.084 11 C 0.069 3.931 12 N -0.536 5.536 13 C 0.039 3.961 14 C -0.136 4.136 15 C -0.098 4.098 16 C 0.074 3.926 17 H 0.046 0.954 18 C 0.072 3.928 19 N -0.514 5.514 20 C 0.027 3.973 21 C -0.118 4.118 22 C -0.128 4.128 23 C 0.031 3.969 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.010 1.010 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.015 0.985 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.035 0.965 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -22.624 -3.241 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.059 4.059 12 N -0.261 5.261 13 C -0.088 4.088 14 C -0.175 4.175 15 C -0.136 4.136 16 C -0.035 4.035 17 H 0.064 0.936 18 C -0.057 4.057 19 N -0.239 5.239 20 C -0.101 4.101 21 C -0.156 4.156 22 C -0.166 4.166 23 C -0.097 4.097 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.033 0.967 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.526 -22.811 -3.311 23.188 hybrid contribution -0.906 1.993 0.094 2.192 sum 1.620 -20.818 -3.216 21.127 Atomic orbital electron populations 1.70095 1.07828 1.27882 1.51587 1.26005 0.95803 1.03419 0.94592 0.85481 0.78289 0.77930 0.79247 1.19178 1.20623 1.19072 1.21651 0.93499 0.92376 1.50750 0.92325 1.18962 0.94363 0.93205 0.94539 1.21331 0.97820 0.92614 1.00462 1.22126 0.93339 0.91137 0.99302 1.63321 1.31942 1.03818 1.26978 1.22876 1.00437 0.97145 0.88380 1.22798 1.02652 0.94207 0.97820 1.22524 1.00755 0.96540 0.93818 1.22538 0.96653 0.89231 0.95029 0.93614 1.22029 0.99188 0.89997 0.94464 1.64784 1.09043 1.34995 1.15088 1.23302 0.88118 0.97782 1.00899 1.22476 0.98945 0.99333 0.94893 1.22405 0.94342 1.02091 0.97760 1.22941 0.99466 0.99941 0.87372 0.92715 0.99277 0.99203 0.93289 0.93343 0.95551 0.92667 0.90431 0.93693 0.88961 0.91524 0.90482 0.89753 0.96663 0.90236 0.89996 0.95338 0.90287 0.89968 0.91408 0.89488 0.94695 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.08 -3.74 5.27 30.60 0.16 -3.57 16 11 C 0.07 2.58 4.59 86.31 0.40 2.98 16 12 N -0.54 -16.68 4.77 -860.65 -4.10 -20.78 16 13 C 0.04 1.07 6.31 86.65 0.55 1.62 16 14 C -0.14 -2.83 6.94 31.78 0.22 -2.61 16 15 C -0.10 -2.06 6.36 31.98 0.20 -1.85 16 16 C 0.07 1.92 2.23 45.39 0.10 2.02 16 17 H 0.05 1.26 6.33 -2.39 -0.02 1.25 16 18 C 0.07 1.84 4.58 86.31 0.39 2.23 16 19 N -0.51 -11.13 5.20 -883.04 -4.59 -15.73 16 20 C 0.03 0.55 5.40 86.65 0.47 1.02 16 21 C -0.12 -1.85 7.06 31.80 0.22 -1.62 16 22 C -0.13 -1.93 6.93 31.48 0.22 -1.71 16 23 C 0.03 0.58 6.70 86.45 0.58 1.16 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 27 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 29 H 0.03 1.00 7.77 -2.39 -0.02 0.98 16 30 H 0.05 2.12 7.99 -2.39 -0.02 2.10 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.34 7.18 -2.39 -0.02 1.32 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.59 7.98 -2.38 -0.02 1.57 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.02 0.45 7.98 -2.39 -0.02 0.43 16 38 H 0.08 2.03 8.04 -2.39 -0.02 2.01 16 39 H 0.08 1.64 7.51 -2.39 -0.02 1.62 16 40 H 0.03 0.68 8.01 -2.39 -0.02 0.66 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.03 0.73 7.68 -2.39 -0.02 0.71 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.11 353.83 -1.14 -66.24 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.89 Total: 11.13 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.36 Total: -30.28 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -8.41 Total: -94.34 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.11 -1.14 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066536696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.228 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds