Wall clock time and date at job start Mon Mar 30 2020 00:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99460 * 2 1 4 4 H 1.07999 * 120.00318 * 316.47298 * 3 2 1 5 5 C 1.38810 * 119.99936 * 136.47334 * 3 2 1 6 6 N 1.31611 * 120.00348 * 169.30675 * 5 3 2 7 7 Si 1.86803 * 120.00066 * 349.30930 * 5 3 2 8 8 H 1.48499 * 109.47370 * 89.56822 * 7 5 3 9 9 H 1.48501 * 109.47454 * 209.57489 * 7 5 3 10 10 H 1.48503 * 109.47038 * 329.57141 * 7 5 3 11 11 C 1.46498 * 120.00125 * 179.97438 * 2 1 3 12 12 C 1.50696 * 109.46843 * 86.49962 * 11 2 1 13 13 O 1.21283 * 120.00174 * 7.14565 * 12 11 2 14 14 N 1.34778 * 119.99911 * 187.13816 * 12 11 2 15 15 C 1.46499 * 120.00003 * 186.76116 * 14 12 11 16 16 C 1.52996 * 117.49998 * 15.49824 * 15 14 12 17 17 C 1.52998 * 117.50013 * 306.83531 * 15 14 12 18 18 C 1.46496 * 119.99908 * 6.75845 * 14 12 11 19 19 C 1.54272 * 110.03472 * 61.26062 * 18 14 12 20 20 C 1.54963 * 104.16109 * 217.13632 * 19 18 14 21 21 C 1.54886 * 102.77562 * 37.88708 * 20 19 18 22 22 C 1.53876 * 110.03509 * 304.04512 * 18 14 12 23 23 H 1.09002 * 109.47283 * 275.03690 * 1 2 3 24 24 H 1.08999 * 109.47230 * 35.04257 * 1 2 3 25 25 H 1.08999 * 109.47032 * 155.04139 * 1 2 3 26 26 H 0.97008 * 120.00707 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46567 * 206.50107 * 11 2 1 28 28 H 1.09002 * 109.46920 * 326.50147 * 11 2 1 29 29 H 1.08998 * 115.54958 * 161.16872 * 15 14 12 30 30 H 1.09002 * 117.50144 * 359.97438 * 16 15 14 31 31 H 1.09002 * 117.49933 * 145.02672 * 16 15 14 32 32 H 1.08998 * 117.49975 * 214.98309 * 17 15 14 33 33 H 1.09010 * 117.49571 * 359.97438 * 17 15 14 34 34 H 1.09006 * 110.01788 * 182.65113 * 18 14 12 35 35 H 1.09002 * 110.47976 * 335.78462 * 19 18 14 36 36 H 1.09003 * 110.48387 * 98.42284 * 19 18 14 37 37 H 1.08993 * 110.72002 * 279.57531 * 20 19 18 38 38 H 1.09000 * 110.92012 * 156.29416 * 20 19 18 39 39 H 1.09001 * 110.48547 * 203.40245 * 21 20 19 40 40 H 1.09004 * 110.60407 * 80.82007 * 21 20 19 41 41 H 1.09006 * 110.03491 * 238.56876 * 22 18 14 42 42 H 1.08997 * 110.03131 * 359.94913 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.8323 1.9927 -0.6441 5 6 3.2514 1.3513 0.8279 6 7 4.0332 2.3999 0.6814 7 14 3.6247 0.0855 2.1500 8 1 4.5049 -0.9711 1.5893 9 1 4.3095 0.7470 3.2896 10 1 2.3564 -0.5259 2.6221 11 6 2.1976 -1.2687 0.0006 12 6 2.3736 -1.7477 -1.4174 13 8 2.0477 -1.0350 -2.3431 14 7 2.8933 -2.9679 -1.6568 15 6 3.2024 -3.3759 -3.0295 16 6 3.2629 -2.2802 -4.0956 17 6 2.0863 -3.2591 -4.0695 18 6 3.1492 -3.8862 -0.5445 19 6 1.8293 -4.2164 0.1827 20 6 2.2297 -4.2965 1.6775 21 6 3.2737 -3.1605 1.8138 22 6 4.0675 -3.2155 0.4922 23 1 -0.3634 0.0902 1.0237 24 1 -0.3633 0.8414 -0.5901 25 1 -0.3633 -0.9317 -0.4336 26 1 4.8031 2.5157 1.2602 27 1 3.1756 -1.1232 0.4591 28 1 1.6370 -2.0116 0.5681 29 1 3.8954 -4.2116 -3.1268 30 1 3.0723 -1.2557 -3.7757 31 1 3.9955 -2.3952 -4.8945 32 1 2.0454 -4.0176 -4.8512 33 1 1.1219 -2.8790 -3.7323 34 1 3.6105 -4.8017 -0.9150 35 1 1.0985 -3.4230 0.0256 36 1 1.4344 -5.1731 -0.1592 37 1 2.6788 -5.2631 1.9051 38 1 1.3700 -4.1104 2.3212 39 1 3.9320 -3.3472 2.6623 40 1 2.7786 -2.1954 1.9215 41 1 4.9740 -3.8060 0.6255 42 1 4.3234 -2.2071 0.1673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:48 Heat of formation + Delta-G solvation = 56.811367 kcal Electronic energy + Delta-G solvation = -22589.338226 eV Core-core repulsion = 19572.816734 eV Total energy + Delta-G solvation = -3016.521492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51617 -37.72458 -36.39701 -34.79770 -32.73434 -31.56984 -29.09306 -27.91966 -26.99078 -25.97712 -22.90786 -22.03644 -21.24272 -20.70697 -20.49865 -18.76077 -17.28949 -16.19450 -16.09272 -15.80817 -14.88669 -14.61103 -14.29662 -14.10658 -13.79060 -13.55492 -12.96475 -12.80823 -12.65408 -12.35981 -11.92965 -11.77976 -11.54848 -11.32569 -11.11019 -11.06609 -10.96344 -10.79445 -10.68118 -10.57425 -10.47598 -10.30629 -10.02400 -9.80061 -9.48933 -8.79610 -8.51120 -7.94998 -6.72465 -5.94765 -3.50048 3.14840 3.24634 3.27418 3.34757 3.43762 4.22142 4.43966 4.58291 4.69120 4.84648 5.01609 5.16017 5.16882 5.30908 5.35183 5.40007 5.47518 5.51123 5.57231 5.63834 5.71525 5.80837 5.88336 5.93405 5.97747 6.03995 6.13862 6.16914 6.22649 6.28049 6.35914 6.41060 6.45133 6.66638 6.75907 6.77126 7.20019 7.85632 8.10310 8.45107 8.86035 9.05100 9.67264 10.08522 11.18672 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.010370 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.541760 B = 2699.554243 C = 3462.206946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.591 5.591 3 C -0.258 4.258 4 H 0.079 0.921 5 C 0.029 3.971 6 N -0.905 5.905 7 Si 0.877 3.123 8 H -0.268 1.268 9 H -0.301 1.301 10 H -0.265 1.265 11 C 0.097 3.903 12 C 0.488 3.512 13 O -0.509 6.509 14 N -0.597 5.597 15 C 0.071 3.929 16 C -0.194 4.194 17 C -0.190 4.190 18 C 0.147 3.853 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.152 4.152 22 C -0.152 4.152 23 H 0.014 0.986 24 H 0.042 0.958 25 H 0.027 0.973 26 H 0.263 0.737 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -17.133 -0.531 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.096 0.904 5 C -0.171 4.171 6 N -0.547 5.547 7 Si 0.709 3.291 8 H -0.196 1.196 9 H -0.229 1.229 10 H -0.190 1.190 11 C -0.032 4.032 12 C 0.276 3.724 13 O -0.383 6.383 14 N -0.332 5.332 15 C -0.034 4.034 16 C -0.231 4.231 17 C -0.229 4.229 18 C 0.043 3.957 19 C -0.182 4.182 20 C -0.158 4.158 21 C -0.189 4.189 22 C -0.190 4.190 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.578 -16.570 -0.945 16.672 hybrid contribution 0.536 -0.775 0.573 1.103 sum -1.042 -17.345 -0.372 17.380 Atomic orbital electron populations 1.21054 0.83746 0.98853 0.97785 1.43802 1.01062 1.01092 1.85358 1.18839 1.10629 0.90908 1.18337 0.90378 1.25645 0.97750 0.96353 0.97369 1.69774 1.15873 1.29338 1.39715 0.87199 0.78323 0.80960 0.82647 1.19602 1.22923 1.19028 1.22452 0.99394 0.90104 0.91259 1.23018 0.75501 0.79187 0.94697 1.90440 1.47580 1.55029 1.45294 1.48006 1.64728 1.15676 1.04742 1.21607 1.01125 1.00728 0.79977 1.23853 0.99780 1.00344 0.99138 1.23192 0.95402 1.02759 1.01550 1.21671 0.95227 0.92264 0.86577 1.23022 0.97625 1.02209 0.95380 1.22455 0.98940 0.98663 0.95765 1.23013 0.98114 1.00416 0.97361 1.22940 0.98378 1.02763 0.94958 0.96762 0.93882 0.95435 0.92673 0.88714 0.90281 0.86423 0.84159 0.89905 0.89431 0.88785 0.89198 0.90257 0.91075 0.91251 0.91200 0.91437 0.89940 0.90977 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.81 10.71 59.85 0.64 3.45 16 2 N -0.59 -14.83 1.94 -182.50 -0.35 -15.19 16 3 C -0.26 -7.56 9.98 -15.06 -0.15 -7.71 16 4 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 5 C 0.03 0.84 5.43 -17.43 -0.09 0.75 16 6 N -0.91 -28.20 13.97 55.49 0.78 -27.43 16 7 Si 0.88 21.35 22.30 -169.99 -3.79 17.56 16 8 H -0.27 -5.91 4.42 56.52 0.25 -5.66 16 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 10 H -0.26 -6.14 6.39 56.52 0.36 -5.78 16 11 C 0.10 2.12 2.07 -5.20 -0.01 2.11 16 12 C 0.49 10.42 6.54 -10.99 -0.07 10.35 16 13 O -0.51 -12.47 12.22 5.56 0.07 -12.40 16 14 N -0.60 -10.13 2.81 -157.33 -0.44 -10.57 16 15 C 0.07 1.07 6.58 -67.93 -0.45 0.62 16 16 C -0.19 -3.24 9.63 -26.69 -0.26 -3.50 16 17 C -0.19 -2.85 9.89 -26.69 -0.26 -3.12 16 18 C 0.15 2.01 3.37 -66.81 -0.23 1.78 16 19 C -0.14 -1.81 5.85 -25.03 -0.15 -1.95 16 20 C -0.12 -1.40 6.76 -24.70 -0.17 -1.57 16 21 C -0.15 -2.24 4.78 -25.08 -0.12 -2.36 16 22 C -0.15 -2.28 5.27 -25.62 -0.14 -2.42 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 25 H 0.03 0.52 8.03 -51.93 -0.42 0.10 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 27 H 0.10 2.17 1.04 -51.93 -0.05 2.12 16 28 H 0.08 1.53 3.45 -51.93 -0.18 1.35 16 29 H 0.12 1.41 8.02 -51.93 -0.42 1.00 16 30 H 0.14 2.97 5.19 -52.21 -0.27 2.70 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.63 7.64 -51.92 -0.40 1.23 16 34 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 35 H 0.08 1.17 5.46 -51.93 -0.28 0.88 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.48 2.18 -51.93 -0.11 1.36 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.62 4.42 -51.93 -0.23 1.39 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -32.82 300.88 -6.98 -39.80 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.32 Total: 7.26 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.45 Total: -3.56 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.02 Total: -53.19 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.79 Total: 17.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.82 -6.98 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.611 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds