Wall clock time and date at job start Mon Mar 30 2020 00:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99918 * 2 1 4 4 H 1.08001 * 120.00184 * 200.27309 * 3 2 1 5 5 C 1.38814 * 119.99987 * 20.27245 * 3 2 1 6 6 N 1.31615 * 119.99968 * 15.01862 * 5 3 2 7 7 Si 1.86803 * 120.00050 * 195.02037 * 5 3 2 8 8 H 1.48488 * 109.47275 * 85.00436 * 7 5 3 9 9 H 1.48507 * 109.47014 * 205.00135 * 7 5 3 10 10 H 1.48498 * 109.46989 * 325.00140 * 7 5 3 11 11 C 1.46498 * 120.00623 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.47094 * 270.00436 * 11 2 1 13 13 O 1.21275 * 120.00146 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00022 * 179.97438 * 12 11 2 15 15 C 1.46494 * 120.00304 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47390 * 180.02562 * 16 15 14 18 18 C 1.29444 * 117.96099 * 94.73454 * 17 16 15 19 19 C 1.50069 * 124.07348 * 180.75448 * 18 17 16 20 20 C 1.53029 * 110.14974 * 342.86969 * 19 18 17 21 21 C 1.53391 * 108.43466 * 49.43383 * 20 19 18 22 22 C 1.50069 * 117.96218 * 275.00137 * 17 16 15 23 23 H 1.08994 * 109.47370 * 275.10188 * 1 2 3 24 24 H 1.08998 * 109.47107 * 35.10063 * 1 2 3 25 25 H 1.09002 * 109.46926 * 155.09893 * 1 2 3 26 26 H 0.97009 * 120.00330 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47583 * 150.00402 * 11 2 1 28 28 H 1.09004 * 109.46731 * 29.99709 * 11 2 1 29 29 H 0.97007 * 119.99931 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47078 * 60.00022 * 15 14 12 31 31 H 1.08993 * 109.47025 * 300.00443 * 15 14 12 32 32 H 1.08999 * 109.47506 * 60.00065 * 16 15 14 33 33 H 1.09010 * 109.47498 * 299.99970 * 16 15 14 34 34 H 1.07997 * 117.96577 * 0.72564 * 18 17 16 35 35 H 1.08999 * 109.36145 * 222.66375 * 19 18 17 36 36 H 1.09000 * 109.36138 * 103.07557 * 19 18 17 37 37 H 1.08997 * 109.63807 * 289.75784 * 20 19 18 38 38 H 1.08995 * 109.64721 * 169.12070 * 20 19 18 39 39 H 1.09000 * 109.64071 * 172.88525 * 21 20 19 40 40 H 1.08997 * 109.64544 * 52.25535 * 21 20 19 41 41 H 1.08993 * 109.35884 * 282.79276 * 22 17 16 42 42 H 1.09005 * 109.35549 * 42.51637 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3241 5 6 1.5200 2.3508 0.4165 6 7 0.3863 2.2844 1.0818 7 14 2.2818 4.0128 0.0328 8 1 1.8687 4.4447 -1.3265 9 1 1.8205 5.0110 1.0309 10 1 3.7617 3.9038 0.0892 11 6 2.1976 -1.2686 0.0006 12 6 2.4487 -1.7031 1.4216 13 8 2.0550 -1.0200 2.3431 14 7 3.1109 -2.8507 1.6684 15 6 3.3555 -3.2728 3.0498 16 6 4.1205 -4.5977 3.0503 17 6 4.3717 -5.0322 4.4713 18 6 3.5305 -5.8540 5.0123 19 6 3.6386 -6.3620 6.4203 20 6 5.0524 -6.1294 6.9576 21 6 5.4409 -4.6707 6.6853 22 6 5.5780 -4.4805 5.1731 23 1 -0.3634 0.0914 1.0235 24 1 -0.3633 0.8408 -0.5909 25 1 -0.3633 -0.9322 -0.4327 26 1 -0.0535 3.0985 1.3732 27 1 3.1500 -1.1385 -0.5132 28 1 1.6085 -2.0286 -0.5129 29 1 3.4262 -3.3969 0.9313 30 1 2.4033 -3.4024 3.5641 31 1 3.9451 -2.5130 3.5628 32 1 5.0728 -4.4677 2.5361 33 1 3.5313 -5.3578 2.5371 34 1 2.6990 -6.1950 4.4134 35 1 3.4166 -7.4291 6.4375 36 1 2.9215 -5.8358 7.0504 37 1 5.7510 -6.7952 6.4510 38 1 5.0726 -6.3197 8.0306 39 1 6.3913 -4.4480 7.1701 40 1 4.6659 -4.0073 7.0692 41 1 6.4692 -5.0009 4.8228 42 1 5.6699 -3.4172 4.9516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:52 Heat of formation + Delta-G solvation = -15.875015 kcal Electronic energy + Delta-G solvation = -20006.217620 eV Core-core repulsion = 16986.544210 eV Total energy + Delta-G solvation = -3019.673410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.18165 -38.48011 -35.39029 -34.58506 -32.47937 -31.16804 -30.92459 -28.63467 -26.67191 -25.69442 -23.71758 -23.04116 -21.54239 -21.18153 -19.59189 -17.68519 -16.71220 -16.29516 -15.91323 -15.20237 -15.15354 -14.52231 -14.51926 -14.05872 -13.89922 -13.34644 -13.21374 -13.00747 -12.68879 -12.58368 -12.47242 -12.17533 -11.74260 -11.65348 -11.30417 -11.03128 -10.96460 -10.79586 -10.61926 -10.57554 -10.36168 -10.29951 -9.95114 -9.81272 -9.00283 -8.84620 -8.43753 -8.39421 -6.71344 -5.62274 -3.06978 2.09691 3.44268 3.49654 3.52070 3.67938 3.84309 4.49479 4.55439 4.59161 4.71256 4.96935 5.11523 5.14334 5.22475 5.26750 5.39606 5.41795 5.53026 5.59161 5.64899 5.65474 5.72113 5.77507 5.84943 5.91479 5.99049 6.07828 6.12663 6.20924 6.29046 6.36125 6.52900 6.78259 6.90266 7.07171 7.43719 7.81805 7.91343 8.20196 8.46263 9.21309 9.30820 9.92412 10.39205 11.42500 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.003396 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.250639 B = 8243.149001 C = 8583.899863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.574 5.574 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.896 5.896 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.467 3.533 13 O -0.509 6.509 14 N -0.752 5.752 15 C 0.127 3.873 16 C -0.097 4.097 17 C -0.114 4.114 18 C -0.157 4.157 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.085 4.085 23 H 0.034 0.966 24 H 0.047 0.953 25 H -0.003 1.003 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.390 0.610 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 -18.935 6.151 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.294 5.294 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.251 3.749 13 O -0.381 6.381 14 N -0.409 5.409 15 C 0.002 3.998 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.176 4.176 19 C -0.126 4.126 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.122 4.122 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.016 0.984 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.494 -18.192 6.881 21.223 hybrid contribution 0.515 0.589 -0.248 0.820 sum 9.009 -17.603 6.633 20.857 Atomic orbital electron populations 1.20852 0.81976 0.95398 0.99931 1.43901 1.02107 0.99833 1.83510 1.19159 0.97202 0.84522 1.37914 0.91229 1.25030 0.97902 0.98447 0.97923 1.70128 1.18586 1.26619 1.38623 0.86257 0.78658 0.84004 0.77473 1.21413 1.21753 1.20592 1.20996 0.97916 0.90303 0.90783 1.23641 0.76634 0.79156 0.95484 1.90701 1.48547 1.52386 1.46434 1.46596 1.61365 1.25867 1.07104 1.21115 0.99239 0.94373 0.85083 1.20951 1.00864 0.97307 0.94379 1.20704 0.97094 0.98007 0.95665 1.21924 0.99178 0.99537 0.96915 1.20422 0.97319 1.00712 0.94152 1.21601 0.96725 0.96930 1.00488 1.21612 1.01614 0.96825 0.95840 1.20413 0.95916 1.01238 0.94605 0.94757 0.93450 0.98446 0.93817 0.90960 0.91578 0.77717 0.92381 0.92302 0.90907 0.91051 0.87913 0.91341 0.90956 0.91890 0.91900 0.91738 0.91560 0.90995 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.27 9.02 59.85 0.54 4.81 16 2 N -0.57 -15.24 2.42 -182.51 -0.44 -15.68 16 3 C -0.26 -7.47 9.68 -15.06 -0.15 -7.62 16 4 H 0.07 1.94 7.86 -52.49 -0.41 1.53 16 5 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 6 N -0.90 -27.79 10.66 55.49 0.59 -27.20 16 7 Si 0.91 22.77 29.58 -169.99 -5.03 17.74 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.13 2.76 6.19 -5.19 -0.03 2.73 16 12 C 0.47 10.03 7.90 -10.98 -0.09 9.94 16 13 O -0.51 -14.00 16.43 5.56 0.09 -13.91 16 14 N -0.75 -11.80 5.56 -60.30 -0.33 -12.13 16 15 C 0.13 1.85 5.66 -4.05 -0.02 1.83 16 16 C -0.10 -1.03 5.34 -27.89 -0.15 -1.17 16 17 C -0.11 -1.18 5.09 -100.94 -0.51 -1.70 16 18 C -0.16 -1.57 9.37 -35.90 -0.34 -1.91 16 19 C -0.09 -0.76 6.12 -28.17 -0.17 -0.93 16 20 C -0.12 -0.95 6.01 -26.51 -0.16 -1.10 16 21 C -0.12 -1.06 6.01 -26.52 -0.16 -1.22 16 22 C -0.08 -0.81 5.80 -28.18 -0.16 -0.97 16 23 H 0.03 1.01 7.40 -51.93 -0.38 0.62 16 24 H 0.05 1.29 7.21 -51.93 -0.37 0.92 16 25 H 0.00 -0.07 7.84 -51.93 -0.41 -0.47 16 26 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 28 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 29 H 0.39 4.63 8.47 -40.82 -0.35 4.29 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 0.68 7.80 -51.92 -0.40 0.28 16 34 H 0.10 1.00 7.74 -52.49 -0.41 0.59 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -35.44 341.15 -8.81 -44.24 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.34 Total: -0.98 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.49 Total: 2.78 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.18 Total: -55.02 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.44 -8.81 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.369 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds