Wall clock time and date at job start Mon Mar 30 2020 00:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99918 * 2 1 4 4 H 1.08001 * 120.00184 * 200.27309 * 3 2 1 5 5 C 1.38814 * 119.99987 * 20.27245 * 3 2 1 6 6 N 1.31615 * 119.99968 * 15.01862 * 5 3 2 7 7 Si 1.86803 * 120.00050 * 195.02037 * 5 3 2 8 8 H 1.48488 * 109.47275 * 85.00436 * 7 5 3 9 9 H 1.48507 * 109.47014 * 205.00135 * 7 5 3 10 10 H 1.48498 * 109.46989 * 325.00140 * 7 5 3 11 11 C 1.46498 * 120.00623 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.47094 * 270.00436 * 11 2 1 13 13 O 1.21275 * 120.00146 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00022 * 179.97438 * 12 11 2 15 15 C 1.46494 * 120.00304 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47319 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47390 * 180.02562 * 16 15 14 18 18 C 1.29444 * 117.96099 * 94.73454 * 17 16 15 19 19 C 1.50069 * 124.07348 * 180.75448 * 18 17 16 20 20 C 1.53029 * 110.14974 * 342.86969 * 19 18 17 21 21 C 1.53391 * 108.43466 * 49.43383 * 20 19 18 22 22 C 1.50069 * 117.96218 * 275.00137 * 17 16 15 23 23 H 1.08994 * 109.47370 * 275.10188 * 1 2 3 24 24 H 1.08998 * 109.47107 * 35.10063 * 1 2 3 25 25 H 1.09002 * 109.46926 * 155.09893 * 1 2 3 26 26 H 0.97009 * 120.00330 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47583 * 150.00402 * 11 2 1 28 28 H 1.09004 * 109.46731 * 29.99709 * 11 2 1 29 29 H 0.97007 * 119.99931 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47078 * 60.00022 * 15 14 12 31 31 H 1.08993 * 109.47025 * 300.00443 * 15 14 12 32 32 H 1.08999 * 109.47506 * 60.00065 * 16 15 14 33 33 H 1.09010 * 109.47498 * 299.99970 * 16 15 14 34 34 H 1.07997 * 117.96577 * 0.72564 * 18 17 16 35 35 H 1.08999 * 109.36145 * 222.66375 * 19 18 17 36 36 H 1.09000 * 109.36138 * 103.07557 * 19 18 17 37 37 H 1.08997 * 109.63807 * 289.75784 * 20 19 18 38 38 H 1.08995 * 109.64721 * 169.12070 * 20 19 18 39 39 H 1.09000 * 109.64071 * 172.88525 * 21 20 19 40 40 H 1.08997 * 109.64544 * 52.25535 * 21 20 19 41 41 H 1.08993 * 109.35884 * 282.79276 * 22 17 16 42 42 H 1.09005 * 109.35549 * 42.51637 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1795 1.2149 -0.3241 5 6 1.5200 2.3508 0.4165 6 7 0.3863 2.2844 1.0818 7 14 2.2818 4.0128 0.0328 8 1 1.8687 4.4447 -1.3265 9 1 1.8205 5.0110 1.0309 10 1 3.7617 3.9038 0.0892 11 6 2.1976 -1.2686 0.0006 12 6 2.4487 -1.7031 1.4216 13 8 2.0550 -1.0200 2.3431 14 7 3.1109 -2.8507 1.6684 15 6 3.3555 -3.2728 3.0498 16 6 4.1205 -4.5977 3.0503 17 6 4.3717 -5.0322 4.4713 18 6 3.5305 -5.8540 5.0123 19 6 3.6386 -6.3620 6.4203 20 6 5.0524 -6.1294 6.9576 21 6 5.4409 -4.6707 6.6853 22 6 5.5780 -4.4805 5.1731 23 1 -0.3634 0.0914 1.0235 24 1 -0.3633 0.8408 -0.5909 25 1 -0.3633 -0.9322 -0.4327 26 1 -0.0535 3.0985 1.3732 27 1 3.1500 -1.1385 -0.5132 28 1 1.6085 -2.0286 -0.5129 29 1 3.4262 -3.3969 0.9313 30 1 2.4033 -3.4024 3.5641 31 1 3.9451 -2.5130 3.5628 32 1 5.0728 -4.4677 2.5361 33 1 3.5313 -5.3578 2.5371 34 1 2.6990 -6.1950 4.4134 35 1 3.4166 -7.4291 6.4375 36 1 2.9215 -5.8358 7.0504 37 1 5.7510 -6.7952 6.4510 38 1 5.0726 -6.3197 8.0306 39 1 6.3913 -4.4480 7.1701 40 1 4.6659 -4.0073 7.0692 41 1 6.4692 -5.0009 4.8228 42 1 5.6699 -3.4172 4.9516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:52 Heat of formation + Delta-G solvation = -38.946561 kcal Electronic energy + Delta-G solvation = -20007.218078 eV Core-core repulsion = 16986.544210 eV Total energy + Delta-G solvation = -3020.673867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51870 -39.60730 -37.16360 -36.11211 -33.66505 -33.19025 -31.64333 -29.96790 -28.24193 -27.77936 -24.74298 -23.98782 -23.23136 -22.14487 -21.21527 -18.81002 -18.45588 -17.85167 -17.21353 -16.64506 -16.46736 -16.16159 -15.55921 -15.25071 -15.12270 -14.77790 -14.71696 -14.58359 -13.91444 -13.71357 -13.49989 -13.35925 -13.07727 -12.94212 -12.78739 -12.70315 -12.52485 -12.26424 -12.12627 -12.03361 -11.86912 -11.66621 -11.32040 -11.10302 -10.85765 -10.50743 -9.93351 -9.66474 -8.82579 -7.80854 -5.28572 1.28745 1.45078 1.48019 1.55989 1.97814 2.42702 2.55248 3.35158 3.70927 3.75925 3.81751 4.04264 4.11732 4.14975 4.33985 4.39786 4.42326 4.49368 4.62060 4.65763 4.70275 4.73984 4.74381 4.80646 4.91500 5.00639 5.04244 5.10165 5.14001 5.18914 5.29414 5.33579 5.45781 5.60882 5.65210 5.74013 5.77957 6.12006 6.28514 6.82285 7.13527 7.61004 7.86593 8.26468 9.23079 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.003396 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.250639 B = 8243.149001 C = 8583.899863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.594 5.594 3 C -0.265 4.265 4 H 0.078 0.922 5 C -0.058 4.058 6 N -0.936 5.936 7 Si 0.974 3.026 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.269 1.269 11 C 0.127 3.873 12 C 0.468 3.532 13 O -0.580 6.580 14 N -0.725 5.725 15 C 0.130 3.870 16 C -0.083 4.083 17 C -0.130 4.130 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.086 4.086 23 H -0.010 1.010 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.245 0.755 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.415 0.585 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 -21.053 5.164 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.315 5.315 3 C -0.395 4.395 4 H 0.096 0.904 5 C -0.253 4.253 6 N -0.582 5.582 7 Si 0.802 3.198 8 H -0.203 1.203 9 H -0.227 1.227 10 H -0.193 1.193 11 C -0.003 4.003 12 C 0.253 3.747 13 O -0.457 6.457 14 N -0.382 5.382 15 C 0.005 3.995 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.176 4.176 19 C -0.130 4.130 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.123 4.123 23 H 0.009 0.991 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.251 0.749 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.402 -20.406 5.848 23.639 hybrid contribution -0.016 1.071 0.068 1.073 sum 10.385 -19.335 5.916 22.731 Atomic orbital electron populations 1.20565 0.82508 0.96496 0.97200 1.44093 1.02296 1.01270 1.83824 1.19588 0.97503 0.85818 1.36626 0.90412 1.25911 0.98715 1.02275 0.98440 1.70343 1.20375 1.26892 1.40571 0.85189 0.78240 0.79218 0.77189 1.20284 1.22693 1.19344 1.21286 0.99329 0.89084 0.90627 1.23506 0.76337 0.79870 0.94960 1.90694 1.51810 1.54985 1.48231 1.46177 1.59102 1.24216 1.08676 1.21124 0.98531 0.96119 0.83678 1.20848 1.01116 0.94930 0.95162 1.20798 0.97856 0.98633 0.95739 1.22152 0.98714 0.99105 0.97656 1.20491 0.97760 1.01519 0.93192 1.21596 0.96331 0.96176 1.01314 1.21631 1.01748 0.97335 0.95382 1.20436 0.96238 1.00482 0.95153 0.99126 0.95701 0.94249 0.94619 0.88377 0.87463 0.74855 0.94392 0.94427 0.89325 0.89404 0.87742 0.89870 0.91316 0.91240 0.90736 0.90616 0.93089 0.89634 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 9.02 127.77 1.15 10.55 16 2 N -0.59 -31.30 2.42 -731.32 -1.77 -33.07 16 3 C -0.27 -15.31 9.68 84.03 0.81 -14.50 16 4 H 0.08 4.25 7.86 -2.91 -0.02 4.23 16 5 C -0.06 -3.50 5.06 84.86 0.43 -3.07 16 6 N -0.94 -60.14 10.66 21.65 0.23 -59.91 16 7 Si 0.97 47.47 29.58 68.60 2.03 49.50 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 9 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.13 5.00 6.19 85.64 0.53 5.53 16 12 C 0.47 19.67 7.90 87.66 0.69 20.37 16 13 O -0.58 -32.67 16.43 -3.01 -0.05 -32.72 16 14 N -0.73 -21.31 5.56 -463.09 -2.57 -23.88 16 15 C 0.13 3.72 5.66 86.38 0.49 4.21 16 16 C -0.08 -1.56 5.34 29.85 0.16 -1.40 16 17 C -0.13 -2.49 5.09 -15.10 -0.08 -2.57 16 18 C -0.16 -2.90 9.37 27.04 0.25 -2.65 16 19 C -0.09 -1.42 6.12 29.66 0.18 -1.24 16 20 C -0.12 -1.61 6.01 30.73 0.18 -1.43 16 21 C -0.12 -2.02 6.01 30.73 0.18 -1.84 16 22 C -0.09 -1.54 5.80 29.66 0.17 -1.37 16 23 H -0.01 -0.60 7.40 -2.39 -0.02 -0.61 16 24 H 0.02 1.38 7.21 -2.39 -0.02 1.36 16 25 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 26 H 0.24 15.26 8.31 -92.70 -0.77 14.49 16 27 H 0.10 3.36 8.03 -2.39 -0.02 3.34 16 28 H 0.11 3.32 7.86 -2.39 -0.02 3.31 16 29 H 0.41 8.32 8.47 -92.70 -0.79 7.53 16 30 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.09 1.39 7.80 -2.38 -0.02 1.38 16 34 H 0.10 1.84 7.74 -2.91 -0.02 1.82 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 0.88 8.12 -2.39 -0.02 0.87 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.24 8.11 -2.38 -0.02 1.22 16 Total: -1.00 -80.13 341.15 3.23 -76.90 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.20 Total: 12.58 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.16 Total: 10.60 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.11 Total: -116.86 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.05 Total: -32.72 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -80.13 3.23 -76.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.951 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds