Wall clock time and date at job start Mon Mar 30 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48493 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47165 * 300.00194 * 3 2 1 6 6 H 1.48508 * 109.47089 * 59.99818 * 3 2 1 7 7 C 1.37871 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.46848 * 110.99774 * 66.05567 * 10 9 7 12 12 C 1.53034 * 109.52301 * 174.15889 * 11 10 9 13 13 C 1.53119 * 109.27819 * 59.17684 * 12 11 10 14 14 C 1.53121 * 109.16051 * 302.34417 * 13 12 11 15 15 H 1.08997 * 109.50196 * 297.67513 * 14 13 12 16 16 N 1.46901 * 109.50410 * 177.59879 * 14 13 12 17 17 C 1.47999 * 111.00261 * 195.89448 * 16 14 13 18 18 C 1.50437 * 112.82821 * 191.34674 * 17 16 14 19 19 C 1.54312 * 108.50368 * 93.72312 * 18 17 16 20 20 C 1.45873 * 112.18342 * 281.46023 * 19 18 17 21 21 C 1.54318 * 112.18372 * 61.12468 * 20 19 18 22 22 C 1.47997 * 111.00204 * 67.16696 * 16 14 13 23 23 C 1.46843 * 111.00259 * 301.83817 * 10 9 7 24 24 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46824 * 60.00319 * 9 7 2 26 26 H 1.08996 * 109.47684 * 300.00261 * 9 7 2 27 27 H 1.09006 * 109.45949 * 294.17411 * 11 10 9 28 28 H 1.08996 * 109.46300 * 54.14694 * 11 10 9 29 29 H 1.08999 * 109.50373 * 179.11490 * 12 11 10 30 30 H 1.08997 * 109.50522 * 299.19858 * 12 11 10 31 31 H 1.09000 * 109.52451 * 62.25040 * 13 12 11 32 32 H 1.09005 * 109.52420 * 182.37645 * 13 12 11 33 33 H 1.09008 * 108.80632 * 312.20609 * 17 16 14 34 34 H 1.08999 * 108.81460 * 70.47657 * 17 16 14 35 35 H 1.09000 * 109.63468 * 334.01509 * 18 17 16 36 36 H 1.09008 * 109.79674 * 213.52469 * 18 17 16 37 37 H 1.09005 * 108.93731 * 160.76300 * 19 18 17 38 38 H 1.09002 * 108.93422 * 42.16218 * 19 18 17 39 39 H 1.08998 * 108.94489 * 300.42326 * 20 19 18 40 40 H 1.09002 * 108.93701 * 181.81542 * 20 19 18 41 41 H 1.08998 * 109.62974 * 161.75872 * 21 20 19 42 42 H 1.08998 * 109.79726 * 41.25481 * 21 20 19 43 43 H 1.08999 * 108.81124 * 205.70147 * 22 16 14 44 44 H 1.08996 * 108.81636 * 323.97937 * 22 16 14 45 45 H 1.08994 * 109.46796 * 305.86080 * 23 10 9 46 46 H 1.09009 * 109.46044 * 65.82348 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 2.9717 -3.6534 1.2539 12 6 3.8480 -4.9077 1.2798 13 6 4.7981 -4.8855 0.0792 14 6 3.9767 -4.7973 -1.2101 15 1 3.3474 -5.6824 -1.3019 16 7 4.8823 -4.7175 -2.3640 17 6 4.1628 -4.2556 -3.5720 18 6 4.9717 -4.4159 -4.8302 19 6 4.6120 -5.7712 -5.4744 20 6 5.2738 -6.8892 -4.8111 21 6 4.8676 -7.0096 -3.3272 22 6 5.6320 -5.9816 -2.5383 23 6 3.0966 -3.5462 -1.1639 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 3.6033 -2.7675 1.3201 28 1 2.2842 -3.6733 2.0995 29 1 4.4280 -4.9274 2.2024 30 1 3.2161 -5.7943 1.2281 31 1 5.4565 -4.0198 0.1516 32 1 5.3951 -5.7974 0.0701 33 1 3.2403 -4.8277 -3.6719 34 1 3.9091 -3.2027 -3.4490 35 1 6.0341 -4.3962 -4.5876 36 1 4.7396 -3.6076 -5.5239 37 1 4.9102 -5.7549 -6.5227 38 1 3.5329 -5.9145 -5.4175 39 1 6.3529 -6.7483 -4.8722 40 1 5.0096 -7.8128 -5.3262 41 1 5.1102 -8.0071 -2.9609 42 1 3.7976 -6.8308 -3.2217 43 1 6.5678 -5.7669 -3.0544 44 1 5.8616 -6.3925 -1.5552 45 1 2.5000 -3.4880 -2.0742 46 1 3.7277 -2.6608 -1.0863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069655559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:48 Heat of formation + Delta-G solvation = -6.731467 kcal Electronic energy + Delta-G solvation = -21877.699758 eV Core-core repulsion = 18994.255936 eV Total energy + Delta-G solvation = -2883.443821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71513 -37.73192 -34.59578 -32.99186 -32.22148 -31.45569 -29.27530 -26.80336 -25.74954 -25.13186 -23.46799 -22.01269 -21.18657 -20.34403 -19.61105 -18.71930 -16.47196 -16.24043 -15.62990 -15.16690 -14.56137 -14.40379 -14.17418 -13.64621 -13.52298 -13.22373 -13.15405 -13.03397 -12.69511 -12.25954 -12.19334 -11.97732 -11.62728 -11.24359 -11.10139 -10.92910 -10.84904 -10.74298 -10.58768 -10.56317 -10.36238 -10.27844 -10.21786 -9.97621 -9.85234 -9.68783 -9.34057 -8.41388 -7.87483 -7.12064 -6.00287 -4.09333 3.27926 3.36151 3.40536 3.99980 4.42857 4.62699 4.70913 4.90456 5.09534 5.14692 5.25057 5.30368 5.37266 5.40313 5.46000 5.49623 5.61437 5.63343 5.73592 5.82502 5.88159 5.98753 6.01352 6.03937 6.06683 6.09495 6.17149 6.26894 6.30038 6.33108 6.36228 6.41978 6.55040 6.57667 6.71196 6.82543 6.95541 7.27255 7.43645 7.48107 7.55752 7.92539 8.10585 8.32552 8.36838 9.01700 9.57691 11.04554 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.005412 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.643518 B = 5172.046672 C = 5890.544124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.543 5.543 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.106 4.106 14 C 0.092 3.908 15 H 0.041 0.959 16 N -0.544 5.544 17 C 0.061 3.939 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.149 4.149 22 C 0.058 3.942 23 C 0.072 3.928 24 H 0.261 0.739 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -12.876 -6.582 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.063 3.937 10 N -0.267 5.267 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.144 4.144 14 C -0.017 4.017 15 H 0.059 0.941 16 N -0.270 5.270 17 C -0.066 4.066 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.188 4.188 22 C -0.069 4.069 23 C -0.057 4.057 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.511 -12.850 -6.535 17.841 hybrid contribution 0.216 1.184 -0.153 1.213 sum 10.727 -11.666 -6.688 17.202 Atomic orbital electron populations 1.69956 1.06014 1.26655 1.50455 1.24956 0.94734 0.99110 0.94978 0.86612 0.80230 0.84018 0.77628 1.19795 1.20958 1.20989 1.21805 0.93420 0.92048 1.51270 0.92371 1.19729 0.90712 0.85473 0.97813 1.62396 1.17064 1.46466 1.00772 1.21865 0.95770 0.95559 0.93438 1.21611 0.97513 0.99350 0.96943 1.21602 0.97641 1.01216 0.93966 1.21650 0.92226 0.98419 0.89381 0.94121 1.61863 1.30548 1.30036 1.04527 1.21788 0.95095 1.01045 0.88681 1.21436 1.01226 0.96703 0.96385 1.20612 1.00846 0.95172 0.99295 1.20525 1.00559 0.98326 0.95741 1.21924 1.01422 0.99799 0.95697 1.21895 0.96965 0.88177 0.99906 1.21922 0.94213 0.95039 0.94556 0.92921 0.95245 0.95157 0.94480 0.91872 0.92355 0.92072 0.91672 0.92911 0.94828 0.90393 0.90940 0.91282 0.92467 0.92270 0.92214 0.92732 0.91822 0.91619 0.91382 0.91320 0.91884 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.55 -15.12 7.74 -34.44 -0.27 -15.38 16 8 H 0.06 1.62 5.84 -52.49 -0.31 1.31 16 9 C 0.19 4.91 5.13 -4.97 -0.03 4.89 16 10 N -0.54 -11.84 4.86 -236.11 -1.15 -12.99 16 11 C 0.06 1.23 5.14 -3.84 -0.02 1.21 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.11 -1.62 5.23 -26.61 -0.14 -1.76 16 14 C 0.09 1.49 2.08 -67.63 -0.14 1.35 16 15 H 0.04 0.69 7.64 -51.93 -0.40 0.29 16 16 N -0.54 -7.88 4.57 -227.82 -1.04 -8.92 16 17 C 0.06 0.86 3.75 -4.50 -0.02 0.84 16 18 C -0.12 -1.37 5.63 -27.32 -0.15 -1.53 16 19 C -0.12 -1.23 5.30 -29.42 -0.16 -1.39 16 20 C -0.11 -1.09 5.30 -29.41 -0.16 -1.25 16 21 C -0.15 -1.60 5.54 -27.31 -0.15 -1.76 16 22 C 0.06 0.69 5.00 -4.49 -0.02 0.67 16 23 C 0.07 1.43 3.49 -3.84 -0.01 1.42 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.84 8.06 -51.93 -0.42 0.43 16 27 H 0.04 0.80 7.03 -51.93 -0.37 0.43 16 28 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 33 H 0.03 0.49 6.35 -51.92 -0.33 0.16 16 34 H 0.08 1.24 6.95 -51.93 -0.36 0.88 16 35 H 0.07 0.84 7.08 -51.93 -0.37 0.47 16 36 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 39 H 0.06 0.54 7.52 -51.93 -0.39 0.15 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.82 6.63 -51.93 -0.34 0.47 16 43 H 0.07 0.77 6.59 -51.93 -0.34 0.43 16 44 H 0.07 0.80 5.91 -51.93 -0.31 0.50 16 45 H 0.06 1.30 6.50 -51.93 -0.34 0.96 16 46 H 0.05 1.04 6.57 -51.92 -0.34 0.70 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -28.54 328.51 -11.31 -39.85 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.26 Total: -0.91 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.52 Total: -12.94 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.45 Total: -47.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.54 -11.31 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069655559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.119 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds