Wall clock time and date at job start Mon Mar 30 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48493 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47165 * 300.00194 * 3 2 1 6 6 H 1.48508 * 109.47089 * 59.99818 * 3 2 1 7 7 C 1.37871 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.46848 * 110.99774 * 66.05567 * 10 9 7 12 12 C 1.53034 * 109.52301 * 174.15889 * 11 10 9 13 13 C 1.53119 * 109.27819 * 59.17684 * 12 11 10 14 14 C 1.53121 * 109.16051 * 302.34417 * 13 12 11 15 15 H 1.08997 * 109.50196 * 297.67513 * 14 13 12 16 16 N 1.46901 * 109.50410 * 177.59879 * 14 13 12 17 17 C 1.47999 * 111.00261 * 195.89448 * 16 14 13 18 18 C 1.50437 * 112.82821 * 191.34674 * 17 16 14 19 19 C 1.54312 * 108.50368 * 93.72312 * 18 17 16 20 20 C 1.45873 * 112.18342 * 281.46023 * 19 18 17 21 21 C 1.54318 * 112.18372 * 61.12468 * 20 19 18 22 22 C 1.47997 * 111.00204 * 67.16696 * 16 14 13 23 23 C 1.46843 * 111.00259 * 301.83817 * 10 9 7 24 24 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46824 * 60.00319 * 9 7 2 26 26 H 1.08996 * 109.47684 * 300.00261 * 9 7 2 27 27 H 1.09006 * 109.45949 * 294.17411 * 11 10 9 28 28 H 1.08996 * 109.46300 * 54.14694 * 11 10 9 29 29 H 1.08999 * 109.50373 * 179.11490 * 12 11 10 30 30 H 1.08997 * 109.50522 * 299.19858 * 12 11 10 31 31 H 1.09000 * 109.52451 * 62.25040 * 13 12 11 32 32 H 1.09005 * 109.52420 * 182.37645 * 13 12 11 33 33 H 1.09008 * 108.80632 * 312.20609 * 17 16 14 34 34 H 1.08999 * 108.81460 * 70.47657 * 17 16 14 35 35 H 1.09000 * 109.63468 * 334.01509 * 18 17 16 36 36 H 1.09008 * 109.79674 * 213.52469 * 18 17 16 37 37 H 1.09005 * 108.93731 * 160.76300 * 19 18 17 38 38 H 1.09002 * 108.93422 * 42.16218 * 19 18 17 39 39 H 1.08998 * 108.94489 * 300.42326 * 20 19 18 40 40 H 1.09002 * 108.93701 * 181.81542 * 20 19 18 41 41 H 1.08998 * 109.62974 * 161.75872 * 21 20 19 42 42 H 1.08998 * 109.79726 * 41.25481 * 21 20 19 43 43 H 1.08999 * 108.81124 * 205.70147 * 22 16 14 44 44 H 1.08996 * 108.81636 * 323.97937 * 22 16 14 45 45 H 1.08994 * 109.46796 * 305.86080 * 23 10 9 46 46 H 1.09009 * 109.46044 * 65.82348 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 2.9717 -3.6534 1.2539 12 6 3.8480 -4.9077 1.2798 13 6 4.7981 -4.8855 0.0792 14 6 3.9767 -4.7973 -1.2101 15 1 3.3474 -5.6824 -1.3019 16 7 4.8823 -4.7175 -2.3640 17 6 4.1628 -4.2556 -3.5720 18 6 4.9717 -4.4159 -4.8302 19 6 4.6120 -5.7712 -5.4744 20 6 5.2738 -6.8892 -4.8111 21 6 4.8676 -7.0096 -3.3272 22 6 5.6320 -5.9816 -2.5383 23 6 3.0966 -3.5462 -1.1639 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 3.6033 -2.7675 1.3201 28 1 2.2842 -3.6733 2.0995 29 1 4.4280 -4.9274 2.2024 30 1 3.2161 -5.7943 1.2281 31 1 5.4565 -4.0198 0.1516 32 1 5.3951 -5.7974 0.0701 33 1 3.2403 -4.8277 -3.6719 34 1 3.9091 -3.2027 -3.4490 35 1 6.0341 -4.3962 -4.5876 36 1 4.7396 -3.6076 -5.5239 37 1 4.9102 -5.7549 -6.5227 38 1 3.5329 -5.9145 -5.4175 39 1 6.3529 -6.7483 -4.8722 40 1 5.0096 -7.8128 -5.3262 41 1 5.1102 -8.0071 -2.9609 42 1 3.7976 -6.8308 -3.2217 43 1 6.5678 -5.7669 -3.0544 44 1 5.8616 -6.3925 -1.5552 45 1 2.5000 -3.4880 -2.0742 46 1 3.7277 -2.6608 -1.0863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069655559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:48 Heat of formation + Delta-G solvation = -24.891800 kcal Electronic energy + Delta-G solvation = -21878.487249 eV Core-core repulsion = 18994.255936 eV Total energy + Delta-G solvation = -2884.231312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92108 -39.11973 -36.01932 -34.71215 -33.50756 -32.87060 -30.62123 -28.76595 -26.85757 -26.44778 -25.14841 -23.36407 -22.71786 -21.39457 -20.92190 -20.04149 -18.47794 -17.52787 -16.83660 -16.67904 -16.12819 -15.73070 -15.52561 -15.09860 -14.84409 -14.58288 -14.49530 -14.33204 -14.02001 -13.70597 -13.38305 -13.32122 -13.00704 -12.96652 -12.81740 -12.46305 -12.33014 -12.22330 -12.00014 -11.79435 -11.77045 -11.56664 -11.51350 -11.46582 -11.24888 -11.12155 -10.83881 -10.63394 -9.07908 -9.00621 -8.17502 -6.37573 1.33581 1.34801 1.47075 2.35247 2.80456 3.06870 3.44916 3.78578 3.85134 3.87420 4.07626 4.13455 4.18316 4.24165 4.31605 4.42967 4.46503 4.55035 4.60102 4.68304 4.72921 4.83985 4.88455 4.91213 4.95877 5.04312 5.07963 5.09480 5.15540 5.18102 5.21609 5.25840 5.27626 5.29507 5.31003 5.39139 5.40727 5.50016 5.52915 5.72035 6.02613 6.16006 6.25217 6.36973 6.57847 6.83296 7.34093 8.84982 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.005412 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.643518 B = 5172.046672 C = 5890.544124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.201 3.799 10 N -0.543 5.543 11 C 0.061 3.939 12 C -0.105 4.105 13 C -0.101 4.101 14 C 0.104 3.896 15 H 0.038 0.962 16 N -0.552 5.552 17 C 0.065 3.935 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.146 4.146 22 C 0.058 3.942 23 C 0.082 3.918 24 H 0.266 0.734 25 H 0.000 1.000 26 H 0.006 0.994 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 -14.163 -6.915 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.267 5.267 11 C -0.068 4.068 12 C -0.143 4.143 13 C -0.139 4.139 14 C -0.005 4.005 15 H 0.056 0.944 16 N -0.277 5.277 17 C -0.062 4.062 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.185 4.185 22 C -0.068 4.068 23 C -0.047 4.047 24 H 0.074 0.926 25 H 0.019 0.981 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.982 -14.158 -6.869 20.400 hybrid contribution -0.585 1.565 -0.060 1.672 sum 12.397 -12.592 -6.929 18.981 Atomic orbital electron populations 1.70071 1.07543 1.27840 1.51157 1.25805 0.95607 1.02806 0.94457 0.85525 0.78858 0.79429 0.78006 1.19383 1.20196 1.20074 1.21965 0.93222 0.92948 1.51163 0.92846 1.19385 0.91138 0.86854 0.95153 1.62348 1.17617 1.44124 1.02567 1.21957 0.95671 0.97181 0.91958 1.21563 0.97169 0.96947 0.98650 1.21585 0.97320 1.02349 0.92646 1.21449 0.92164 0.95645 0.91243 0.94407 1.61857 1.29826 1.32097 1.03941 1.21728 0.95422 0.99038 0.90045 1.21401 1.00816 0.97993 0.95005 1.20584 1.00271 0.94455 1.00246 1.20522 1.01109 0.98518 0.94843 1.21888 0.99819 1.00245 0.96567 1.22000 0.96930 0.87084 1.00834 1.21830 0.93640 0.96260 0.92995 0.92550 0.98143 0.97543 0.96653 0.92458 0.89476 0.91175 0.92709 0.89625 0.95996 0.93318 0.90475 0.90897 0.90774 0.93411 0.91043 0.91457 0.90096 0.93750 0.90154 0.90527 0.93625 0.96348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -31.84 7.74 25.60 0.20 -31.64 16 8 H 0.05 3.07 5.84 -2.91 -0.02 3.06 16 9 C 0.20 11.10 5.13 85.56 0.44 11.54 16 10 N -0.54 -24.62 4.86 -900.92 -4.38 -28.99 16 11 C 0.06 2.42 5.14 86.32 0.44 2.87 16 12 C -0.11 -3.09 6.09 30.65 0.19 -2.91 16 13 C -0.10 -2.86 5.23 30.67 0.16 -2.70 16 14 C 0.10 3.33 2.08 44.97 0.09 3.42 16 15 H 0.04 1.26 7.64 -2.39 -0.02 1.24 16 16 N -0.55 -15.53 4.57 -874.70 -4.00 -19.53 16 17 C 0.06 1.86 3.75 85.26 0.32 2.18 16 18 C -0.11 -2.50 5.63 30.21 0.17 -2.33 16 19 C -0.12 -2.17 5.30 28.85 0.15 -2.01 16 20 C -0.11 -1.83 5.30 28.86 0.15 -1.67 16 21 C -0.15 -2.77 5.54 30.22 0.17 -2.61 16 22 C 0.06 1.23 5.00 85.27 0.43 1.66 16 23 C 0.08 3.40 3.49 86.33 0.30 3.70 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 26 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 27 H 0.02 0.67 7.03 -2.38 -0.02 0.65 16 28 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.93 6.37 -2.38 -0.02 1.91 16 33 H 0.02 0.67 6.35 -2.38 -0.02 0.65 16 34 H 0.05 1.65 6.95 -2.39 -0.02 1.63 16 35 H 0.08 1.63 7.08 -2.39 -0.02 1.61 16 36 H 0.07 1.52 8.14 -2.38 -0.02 1.51 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 38 H 0.05 0.99 7.52 -2.39 -0.02 0.97 16 39 H 0.07 1.03 7.52 -2.39 -0.02 1.01 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.05 6.63 -2.39 -0.02 1.03 16 43 H 0.08 1.54 6.59 -2.39 -0.02 1.53 16 44 H 0.08 1.51 5.91 -2.39 -0.01 1.49 16 45 H 0.05 2.02 6.50 -2.39 -0.02 2.00 16 46 H 0.02 0.86 6.57 -2.38 -0.02 0.85 16 Total: -1.00 -63.59 328.51 -1.46 -65.05 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.93 Total: 11.69 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.67 Total: -19.31 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -8.09 Total: -104.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.59 -1.46 -65.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069655559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.161 kcal (2) G-P(sol) polarization free energy of solvation -63.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds