Wall clock time and date at job start Mon Mar 30 2020 00:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00446 * 2 1 4 4 H 1.48498 * 109.47019 * 89.99850 * 3 2 1 5 5 H 1.48498 * 109.47046 * 209.99776 * 3 2 1 6 6 H 1.48507 * 109.46751 * 329.99672 * 3 2 1 7 7 C 1.37882 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99550 * 0.02562 * 7 2 1 9 9 C 1.50689 * 120.00383 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47370 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47155 * 182.11060 * 10 9 7 12 12 C 1.44268 * 110.99834 * 303.28692 * 11 10 9 13 13 C 1.54073 * 111.97919 * 219.30825 * 12 11 10 14 14 C 1.54289 * 112.28866 * 318.91675 * 13 12 11 15 15 C 1.50467 * 113.03581 * 318.30135 * 14 13 12 16 16 C 1.54504 * 108.85073 * 92.15248 * 15 14 13 17 17 H 1.09001 * 109.06032 * 43.35587 * 16 15 14 18 18 N 1.46899 * 108.99880 * 162.30148 * 16 15 14 19 19 C 1.48537 * 111.00367 * 179.65201 * 18 16 15 20 20 C 1.54938 * 103.22810 * 159.71929 * 19 18 16 21 21 C 1.54594 * 102.92287 * 322.59335 * 20 19 18 22 22 C 1.47902 * 111.00081 * 297.05278 * 18 16 15 23 23 C 1.45860 * 111.59557 * 282.81003 * 16 15 14 24 24 H 0.97007 * 119.99854 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47476 * 300.00174 * 9 7 2 26 26 H 1.09008 * 109.47251 * 60.00273 * 9 7 2 27 27 H 1.08997 * 109.46776 * 302.10987 * 10 9 7 28 28 H 1.08997 * 109.46753 * 62.11050 * 10 9 7 29 29 H 1.08994 * 108.98191 * 339.94780 * 12 11 10 30 30 H 1.08997 * 108.97851 * 98.67170 * 12 11 10 31 31 H 1.08997 * 108.91949 * 198.19224 * 13 12 11 32 32 H 1.08996 * 108.84387 * 79.58540 * 13 12 11 33 33 H 1.08999 * 108.77529 * 197.38483 * 14 13 12 34 34 H 1.09008 * 108.67896 * 79.15362 * 14 13 12 35 35 H 1.09001 * 109.57156 * 332.34615 * 15 14 13 36 36 H 1.08998 * 109.57635 * 211.96363 * 15 14 13 37 37 H 1.08994 * 110.66885 * 278.15947 * 19 18 16 38 38 H 1.09008 * 110.66283 * 41.28880 * 19 18 16 39 39 H 1.08998 * 110.72479 * 204.22797 * 20 19 18 40 40 H 1.09006 * 110.86804 * 81.01984 * 20 19 18 41 41 H 1.09004 * 110.30520 * 263.03494 * 21 20 19 42 42 H 1.09003 * 110.30682 * 140.87113 * 21 20 19 43 43 H 1.08990 * 109.91835 * 333.50561 * 22 18 16 44 44 H 1.09000 * 109.91489 * 94.80199 * 22 18 16 45 45 H 1.09005 * 108.79128 * 300.44326 * 23 16 15 46 46 H 1.09003 * 108.79839 * 182.21752 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0010 11 7 5.4895 -2.6371 0.0526 12 6 6.0456 -1.8840 -1.0452 13 6 7.3053 -2.5551 -1.6253 14 6 8.2257 -3.1224 -0.5247 15 6 8.3634 -2.2037 0.6590 16 6 7.2918 -2.5766 1.7077 17 1 7.2467 -3.6618 1.8002 18 7 7.6710 -2.0005 3.0047 19 6 6.6637 -2.3259 4.0467 20 6 7.4452 -2.1269 5.3697 21 6 8.8559 -2.6542 5.0205 22 6 8.9476 -2.5718 3.4855 23 6 5.9747 -2.0757 1.3308 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6805 -0.8888 26 1 3.8745 -0.6802 0.8912 27 1 3.6272 -3.1615 0.8712 28 1 3.6896 -3.1393 -0.9075 29 1 5.2959 -1.7977 -1.8316 30 1 6.3057 -0.8855 -0.6942 31 1 7.8614 -1.8199 -2.2069 32 1 6.9995 -3.3681 -2.2839 33 1 9.2141 -3.2973 -0.9496 34 1 7.8174 -4.0741 -0.1844 35 1 8.2179 -1.1719 0.3392 36 1 9.3559 -2.3163 1.0952 37 1 5.8185 -1.6399 3.9923 38 1 6.3292 -3.3588 3.9491 39 1 7.0011 -2.7155 6.1723 40 1 7.4843 -1.0723 5.6427 41 1 8.9663 -3.6870 5.3513 42 1 9.6190 -2.0255 5.4795 43 1 9.0890 -3.5686 3.0680 44 1 9.7760 -1.9246 3.1973 45 1 6.0242 -0.9905 1.2414 46 1 5.2643 -2.3289 2.1178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069874838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:06 Heat of formation + Delta-G solvation = 2.161883 kcal Electronic energy + Delta-G solvation = -21702.104714 eV Core-core repulsion = 18819.046537 eV Total energy + Delta-G solvation = -2883.058177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02148 -37.97421 -34.85948 -32.94439 -32.65210 -29.95653 -29.08455 -28.98709 -26.23826 -24.63685 -23.55011 -21.85425 -20.82752 -20.76740 -19.79238 -18.62149 -17.01912 -16.31532 -16.11987 -15.34863 -14.81401 -14.46021 -14.37969 -13.93966 -13.63464 -13.43444 -13.15796 -12.86597 -12.61343 -12.41344 -12.24674 -11.97769 -11.84306 -11.60686 -11.41440 -11.21284 -10.97357 -10.82542 -10.68977 -10.53103 -10.46108 -10.40888 -10.22784 -9.95227 -9.90155 -9.75321 -9.23927 -8.55779 -8.38351 -7.69136 -6.06795 -4.04948 3.28615 3.36216 3.39806 3.80646 4.43030 4.49320 4.59719 4.66946 4.83650 4.93706 5.11355 5.23280 5.24867 5.27862 5.35301 5.44477 5.46991 5.60367 5.61360 5.66457 5.73660 5.76270 5.84793 5.91019 5.94955 6.02594 6.02743 6.07309 6.17295 6.22494 6.28979 6.32566 6.37146 6.42069 6.53733 6.56961 6.70823 6.92261 7.05556 7.19784 7.25141 7.53470 7.71434 7.87098 8.50918 8.98018 9.56053 11.06544 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.005714 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.001647 B = 4898.772022 C = 5849.403209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.044 4.044 10 C 0.069 3.931 11 N -0.531 5.531 12 C 0.053 3.947 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.105 4.105 16 C 0.089 3.911 17 H 0.045 0.955 18 N -0.517 5.517 19 C 0.032 3.968 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.039 3.961 23 C 0.056 3.944 24 H 0.263 0.737 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.546 -5.626 5.618 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.213 1.213 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.083 4.083 10 C -0.058 4.058 11 N -0.254 5.254 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.143 4.143 16 C -0.020 4.020 17 H 0.063 0.937 18 N -0.242 5.242 19 C -0.096 4.096 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.089 4.089 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.584 -5.461 5.477 21.056 hybrid contribution -0.106 0.956 0.144 0.972 sum 19.477 -4.505 5.621 20.767 Atomic orbital electron populations 1.69913 1.06271 1.26872 1.51077 1.25015 0.94681 0.99076 0.94503 0.86803 0.80317 0.83790 0.78528 1.20306 1.19204 1.21331 1.21046 0.89274 0.94493 1.50899 0.90933 1.20191 0.97904 0.93884 0.96311 1.22272 0.83359 0.98349 1.01796 1.61761 1.09482 1.52838 1.01333 1.21882 0.96132 0.94880 0.94738 1.21962 0.95597 0.99819 0.97291 1.21136 0.98227 0.99653 0.95489 1.21364 0.97533 1.00412 0.94958 1.20788 0.95502 0.96874 0.88822 0.93704 1.64779 1.02274 1.55176 1.01940 1.23266 0.95810 0.99882 0.90642 1.22473 0.94893 1.01785 0.96987 1.22405 0.97872 1.01050 0.95607 1.22809 0.93573 0.98149 0.94377 1.20923 0.95159 0.98158 0.92934 0.92730 0.96537 0.97093 0.91547 0.91247 0.91379 0.94424 0.92738 0.92243 0.93221 0.91748 0.91590 0.92223 0.89655 0.93564 0.91227 0.90808 0.91748 0.91243 0.93836 0.90636 0.93662 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16 9 C -0.04 -1.06 3.49 -27.88 -0.10 -1.15 16 10 C 0.07 1.39 4.99 -3.82 -0.02 1.37 16 11 N -0.53 -9.15 4.45 -239.55 -1.07 -10.22 16 12 C 0.05 0.86 4.04 -4.67 -0.02 0.84 16 13 C -0.11 -1.43 6.15 -25.50 -0.16 -1.58 16 14 C -0.11 -1.30 5.42 -27.32 -0.15 -1.45 16 15 C -0.10 -1.32 5.06 -27.21 -0.14 -1.46 16 16 C 0.09 1.22 1.44 -70.30 -0.10 1.12 16 17 H 0.05 0.65 7.40 -51.93 -0.38 0.26 16 18 N -0.52 -6.69 5.08 -225.62 -1.15 -7.84 16 19 C 0.03 0.39 5.21 -1.90 -0.01 0.38 16 20 C -0.12 -1.23 7.06 -24.87 -0.18 -1.41 16 21 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16 22 C 0.04 0.41 5.38 -2.75 -0.01 0.40 16 23 C 0.06 0.92 3.13 -6.71 -0.02 0.90 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.40 5.82 -51.93 -0.30 0.10 16 26 H 0.01 0.26 6.47 -51.92 -0.34 -0.07 16 27 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 28 H 0.07 1.40 8.12 -51.93 -0.42 0.98 16 29 H 0.07 1.19 6.84 -51.93 -0.36 0.83 16 30 H 0.04 0.65 6.51 -51.93 -0.34 0.31 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.84 7.38 -51.92 -0.38 0.45 16 35 H 0.07 0.91 7.15 -51.93 -0.37 0.54 16 36 H 0.06 0.67 6.64 -51.93 -0.34 0.33 16 37 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 38 H 0.05 0.57 8.01 -51.92 -0.42 0.16 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.45 7.66 -51.93 -0.40 0.06 16 44 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 45 H 0.05 0.83 6.85 -51.93 -0.36 0.47 16 46 H 0.07 1.16 6.00 -51.93 -0.31 0.85 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -29.90 332.60 -11.08 -40.98 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.47 Total: -1.58 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.51 Total: -16.61 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -1.44 Total: -45.26 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.90 -11.08 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069874838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.138 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds