Wall clock time and date at job start Mon Mar 30 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00446 * 2 1 4 4 H 1.48498 * 109.47019 * 89.99850 * 3 2 1 5 5 H 1.48498 * 109.47046 * 209.99776 * 3 2 1 6 6 H 1.48507 * 109.46751 * 329.99672 * 3 2 1 7 7 C 1.37882 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99550 * 0.02562 * 7 2 1 9 9 C 1.50689 * 120.00383 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47370 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47155 * 182.11060 * 10 9 7 12 12 C 1.44268 * 110.99834 * 303.28692 * 11 10 9 13 13 C 1.54073 * 111.97919 * 219.30825 * 12 11 10 14 14 C 1.54289 * 112.28866 * 318.91675 * 13 12 11 15 15 C 1.50467 * 113.03581 * 318.30135 * 14 13 12 16 16 C 1.54504 * 108.85073 * 92.15248 * 15 14 13 17 17 H 1.09001 * 109.06032 * 43.35587 * 16 15 14 18 18 N 1.46899 * 108.99880 * 162.30148 * 16 15 14 19 19 C 1.48537 * 111.00367 * 179.65201 * 18 16 15 20 20 C 1.54938 * 103.22810 * 159.71929 * 19 18 16 21 21 C 1.54594 * 102.92287 * 322.59335 * 20 19 18 22 22 C 1.47902 * 111.00081 * 297.05278 * 18 16 15 23 23 C 1.45860 * 111.59557 * 282.81003 * 16 15 14 24 24 H 0.97007 * 119.99854 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47476 * 300.00174 * 9 7 2 26 26 H 1.09008 * 109.47251 * 60.00273 * 9 7 2 27 27 H 1.08997 * 109.46776 * 302.10987 * 10 9 7 28 28 H 1.08997 * 109.46753 * 62.11050 * 10 9 7 29 29 H 1.08994 * 108.98191 * 339.94780 * 12 11 10 30 30 H 1.08997 * 108.97851 * 98.67170 * 12 11 10 31 31 H 1.08997 * 108.91949 * 198.19224 * 13 12 11 32 32 H 1.08996 * 108.84387 * 79.58540 * 13 12 11 33 33 H 1.08999 * 108.77529 * 197.38483 * 14 13 12 34 34 H 1.09008 * 108.67896 * 79.15362 * 14 13 12 35 35 H 1.09001 * 109.57156 * 332.34615 * 15 14 13 36 36 H 1.08998 * 109.57635 * 211.96363 * 15 14 13 37 37 H 1.08994 * 110.66885 * 278.15947 * 19 18 16 38 38 H 1.09008 * 110.66283 * 41.28880 * 19 18 16 39 39 H 1.08998 * 110.72479 * 204.22797 * 20 19 18 40 40 H 1.09006 * 110.86804 * 81.01984 * 20 19 18 41 41 H 1.09004 * 110.30520 * 263.03494 * 21 20 19 42 42 H 1.09003 * 110.30682 * 140.87113 * 21 20 19 43 43 H 1.08990 * 109.91835 * 333.50561 * 22 18 16 44 44 H 1.09000 * 109.91489 * 94.80199 * 22 18 16 45 45 H 1.09005 * 108.79128 * 300.44326 * 23 16 15 46 46 H 1.09003 * 108.79839 * 182.21752 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0010 11 7 5.4895 -2.6371 0.0526 12 6 6.0456 -1.8840 -1.0452 13 6 7.3053 -2.5551 -1.6253 14 6 8.2257 -3.1224 -0.5247 15 6 8.3634 -2.2037 0.6590 16 6 7.2918 -2.5766 1.7077 17 1 7.2467 -3.6618 1.8002 18 7 7.6710 -2.0005 3.0047 19 6 6.6637 -2.3259 4.0467 20 6 7.4452 -2.1269 5.3697 21 6 8.8559 -2.6542 5.0205 22 6 8.9476 -2.5718 3.4855 23 6 5.9747 -2.0757 1.3308 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6805 -0.8888 26 1 3.8745 -0.6802 0.8912 27 1 3.6272 -3.1615 0.8712 28 1 3.6896 -3.1393 -0.9075 29 1 5.2959 -1.7977 -1.8316 30 1 6.3057 -0.8855 -0.6942 31 1 7.8614 -1.8199 -2.2069 32 1 6.9995 -3.3681 -2.2839 33 1 9.2141 -3.2973 -0.9496 34 1 7.8174 -4.0741 -0.1844 35 1 8.2179 -1.1719 0.3392 36 1 9.3559 -2.3163 1.0952 37 1 5.8185 -1.6399 3.9923 38 1 6.3292 -3.3588 3.9491 39 1 7.0011 -2.7155 6.1723 40 1 7.4843 -1.0723 5.6427 41 1 8.9663 -3.6870 5.3513 42 1 9.6190 -2.0255 5.4795 43 1 9.0890 -3.5686 3.0680 44 1 9.7760 -1.9246 3.1973 45 1 6.0242 -0.9905 1.2414 46 1 5.2643 -2.3289 2.1178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069874838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:05 Heat of formation + Delta-G solvation = -17.470846 kcal Electronic energy + Delta-G solvation = -21702.956053 eV Core-core repulsion = 18819.046537 eV Total energy + Delta-G solvation = -2883.909516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16138 -39.12863 -36.24102 -34.72444 -33.95797 -31.77155 -30.09726 -29.94541 -27.78553 -25.82429 -25.13344 -23.26951 -22.08093 -21.66327 -20.91379 -19.94797 -19.11426 -17.48478 -17.18367 -16.52508 -16.40221 -16.06930 -15.51006 -15.21362 -14.98689 -14.73554 -14.49430 -14.39178 -14.07558 -13.58364 -13.49302 -13.30452 -13.07539 -12.92956 -12.79301 -12.38835 -12.21134 -12.13013 -12.04224 -11.85333 -11.66981 -11.63461 -11.50560 -11.46908 -11.39893 -11.30892 -11.03297 -10.81690 -9.37387 -9.20060 -8.35246 -6.39064 1.28074 1.29150 1.40577 2.28758 2.68847 2.99601 3.34948 3.65385 3.74686 3.88350 4.00736 4.07589 4.14624 4.22299 4.32752 4.36166 4.38628 4.42831 4.51851 4.61414 4.62900 4.71470 4.77073 4.78976 4.90639 4.92940 4.95767 4.98775 5.01712 5.06836 5.10359 5.19579 5.22151 5.30094 5.32994 5.34934 5.37551 5.41885 5.52734 5.56280 5.93397 6.06173 6.09116 6.28284 6.33033 6.69328 7.25635 8.81320 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.005714 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.001647 B = 4898.772022 C = 5849.403209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.033 4.033 10 C 0.080 3.920 11 N -0.522 5.522 12 C 0.049 3.951 13 C -0.103 4.103 14 C -0.103 4.103 15 C -0.099 4.099 16 C 0.094 3.906 17 H 0.042 0.958 18 N -0.529 5.529 19 C 0.027 3.973 20 C -0.119 4.119 21 C -0.126 4.126 22 C 0.037 3.963 23 C 0.064 3.936 24 H 0.267 0.733 25 H 0.017 0.983 26 H 0.009 0.991 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.026 0.974 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.699 -5.382 5.892 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.071 4.071 10 C -0.048 4.048 11 N -0.244 5.244 12 C -0.080 4.080 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.014 4.014 17 H 0.059 0.941 18 N -0.255 5.255 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.090 4.090 23 C -0.064 4.064 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.761 -5.230 5.752 24.052 hybrid contribution -1.156 0.829 0.068 1.424 sum 21.605 -4.401 5.821 22.804 Atomic orbital electron populations 1.70050 1.08076 1.28143 1.52435 1.25911 0.95517 1.03081 0.94106 0.85747 0.79369 0.78998 0.79074 1.19436 1.17838 1.20444 1.21362 0.91678 0.93288 1.50461 0.94465 1.20065 0.94783 0.96361 0.95925 1.22048 0.85496 0.95836 1.01428 1.61863 1.07227 1.53044 1.02284 1.21982 0.97314 0.94867 0.93801 1.21927 0.94239 1.00233 0.97707 1.21119 0.99186 0.98861 0.94966 1.21334 0.97873 0.99733 0.94739 1.20665 0.94378 0.96430 0.89966 0.94055 1.64774 1.03407 1.55648 1.01644 1.23260 0.95660 0.99017 0.92139 1.22463 0.95334 1.02031 0.95922 1.22405 0.97363 1.02085 0.94514 1.22896 0.92329 0.98370 0.95448 1.20911 0.96584 0.96899 0.91987 0.92390 0.96503 0.97319 0.92173 0.91431 0.92788 0.95335 0.91005 0.91738 0.90694 0.92523 0.92736 0.90358 0.91713 0.93986 0.89939 0.91041 0.90531 0.89850 0.93424 0.89830 0.95608 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.67 5.47 84.66 0.46 1.14 16 3 Si 0.94 45.76 27.47 68.60 1.88 47.64 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.53 -31.10 9.66 25.60 0.25 -30.86 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.03 -1.57 3.49 29.85 0.10 -1.47 16 10 C 0.08 3.28 4.99 86.31 0.43 3.71 16 11 N -0.52 -17.86 4.45 -911.80 -4.06 -21.92 16 12 C 0.05 1.57 4.04 87.16 0.35 1.92 16 13 C -0.10 -2.47 6.15 31.39 0.19 -2.27 16 14 C -0.10 -2.21 5.42 30.21 0.16 -2.05 16 15 C -0.10 -2.26 5.06 30.29 0.15 -2.10 16 16 C 0.09 2.49 1.44 43.24 0.06 2.55 16 17 H 0.04 1.14 7.40 -2.39 -0.02 1.12 16 18 N -0.53 -13.03 5.08 -867.74 -4.41 -17.45 16 19 C 0.03 0.65 5.21 86.65 0.45 1.11 16 20 C -0.12 -2.18 7.06 31.80 0.22 -1.96 16 21 C -0.13 -1.93 6.93 31.47 0.22 -1.71 16 22 C 0.04 0.69 5.38 86.45 0.46 1.15 16 23 C 0.06 2.11 3.13 83.94 0.26 2.37 16 24 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 25 H 0.02 0.81 5.82 -2.39 -0.01 0.80 16 26 H 0.01 0.42 6.47 -2.38 -0.02 0.40 16 27 H 0.06 2.52 7.91 -2.39 -0.02 2.50 16 28 H 0.07 2.78 8.12 -2.39 -0.02 2.76 16 29 H 0.05 1.85 6.84 -2.39 -0.02 1.84 16 30 H 0.03 0.95 6.51 -2.39 -0.02 0.94 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.33 7.38 -2.38 -0.02 1.31 16 35 H 0.05 1.39 7.15 -2.39 -0.02 1.37 16 36 H 0.08 1.51 6.64 -2.39 -0.02 1.49 16 37 H 0.06 1.80 7.56 -2.39 -0.02 1.78 16 38 H 0.04 1.03 8.01 -2.38 -0.02 1.01 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 0.85 7.66 -2.39 -0.02 0.84 16 44 H 0.08 1.43 7.85 -2.39 -0.02 1.41 16 45 H 0.03 0.94 6.85 -2.38 -0.02 0.93 16 46 H 0.05 1.90 6.00 -2.39 -0.01 1.89 16 Total: -1.00 -65.08 332.60 -1.63 -66.72 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.86 Total: 13.22 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 3.79 Total: -28.48 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -8.17 Total: -99.11 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -65.08 -1.63 -66.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069874838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.246 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds