Wall clock time and date at job start Mon Mar 30 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48500 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46989 * 299.99688 * 3 2 1 6 6 H 1.48499 * 109.47060 * 59.99934 * 3 2 1 7 7 C 1.37877 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47005 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46980 * 184.89681 * 10 9 7 12 12 C 1.47626 * 111.00331 * 62.24393 * 11 10 9 13 13 C 1.50807 * 108.03551 * 150.31025 * 12 11 10 14 14 C 1.53818 * 111.62162 * 95.07081 * 13 12 11 15 15 C 1.54183 * 111.96335 * 319.04399 * 14 13 12 16 16 C 1.50751 * 112.61473 * 318.47949 * 15 14 13 17 17 H 1.09004 * 109.54606 * 333.14505 * 16 15 14 18 18 N 1.46902 * 109.54457 * 212.87635 * 16 15 14 19 19 C 1.48538 * 110.99421 * 60.94381 * 18 16 15 20 20 C 1.54934 * 103.22209 * 159.72262 * 19 18 16 21 21 C 1.54601 * 102.92296 * 322.58510 * 20 19 18 22 22 C 1.47897 * 110.99984 * 178.34105 * 18 16 15 23 23 C 1.39783 * 110.99767 * 293.33572 * 11 10 9 24 24 H 0.96995 * 120.00386 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46891 * 59.99512 * 9 7 2 26 26 H 1.08999 * 109.46888 * 299.99559 * 9 7 2 27 27 H 1.08998 * 109.47327 * 64.89381 * 10 9 7 28 28 H 1.08999 * 109.47224 * 304.89164 * 10 9 7 29 29 H 1.09003 * 109.74433 * 269.94309 * 12 11 10 30 30 H 1.09000 * 109.74686 * 30.61932 * 12 11 10 31 31 H 1.09006 * 109.04969 * 215.61785 * 13 12 11 32 32 H 1.08999 * 109.05359 * 334.58560 * 13 12 11 33 33 H 1.08993 * 108.98495 * 79.67958 * 14 13 12 34 34 H 1.08996 * 108.98511 * 198.40787 * 14 13 12 35 35 H 1.09004 * 108.84670 * 197.67428 * 15 14 13 36 36 H 1.08994 * 108.85144 * 79.29474 * 15 14 13 37 37 H 1.08997 * 110.66437 * 278.15147 * 19 18 16 38 38 H 1.08989 * 110.66930 * 41.28852 * 19 18 16 39 39 H 1.08999 * 110.72591 * 204.22491 * 20 19 18 40 40 H 1.09007 * 110.88173 * 81.01098 * 20 19 18 41 41 H 1.08997 * 110.30694 * 263.04057 * 21 20 19 42 42 H 1.08993 * 110.39173 * 140.91972 * 21 20 19 43 43 H 1.09006 * 109.91513 * 333.50589 * 22 18 16 44 44 H 1.08994 * 109.91981 * 94.60496 * 22 18 16 45 45 H 1.08995 * 109.02568 * 68.55044 * 23 11 10 46 46 H 1.09001 * 108.96163 * 309.68743 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5148 -4.9310 -0.1177 12 6 0.7755 -4.9990 -1.3937 13 6 0.6828 -6.4475 -1.8029 14 6 -0.6410 -7.0824 -1.3442 15 6 -1.0324 -6.6354 0.0785 16 6 0.1455 -6.5963 1.0186 17 1 0.9019 -7.3068 0.6851 18 7 -0.2965 -6.9467 2.3750 19 6 -0.8648 -8.3186 2.4118 20 6 -0.7743 -8.6995 3.9108 21 6 0.5673 -8.0677 4.3478 22 6 0.8431 -6.9568 3.3177 23 6 0.7408 -5.1713 1.0212 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8130 -3.6548 0.9311 28 1 2.9284 -3.5562 -0.8424 29 1 -0.2257 -4.5887 -1.2615 30 1 1.3075 -4.4327 -2.1582 31 1 0.7526 -6.5156 -2.8886 32 1 1.5126 -6.9967 -1.3582 33 1 -1.4316 -6.7935 -2.0366 34 1 -0.5378 -8.1674 -1.3590 35 1 -1.7755 -7.3283 0.4735 36 1 -1.4744 -5.6404 0.0260 37 1 -1.9023 -8.3142 2.0779 38 1 -0.2672 -8.9989 1.8053 39 1 -0.7486 -9.7824 4.0328 40 1 -1.6040 -8.2693 4.4718 41 1 1.3623 -8.8129 4.3227 42 1 0.4793 -7.6430 5.3477 43 1 1.7674 -7.1698 2.7805 44 1 0.9190 -5.9920 3.8189 45 1 -0.0725 -4.4465 1.0574 46 1 1.3652 -5.0487 1.9062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069874840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:08 Heat of formation + Delta-G solvation = -1.558468 kcal Electronic energy + Delta-G solvation = -21592.066601 eV Core-core repulsion = 18708.847098 eV Total energy + Delta-G solvation = -2883.219503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90469 -37.95053 -34.79756 -32.74592 -32.66649 -29.59513 -29.00970 -28.79775 -25.77773 -24.75499 -23.54958 -21.88866 -21.08392 -20.60447 -19.45378 -18.87889 -16.61069 -16.18503 -15.89034 -15.07179 -14.82675 -14.53663 -14.35744 -14.06394 -13.71485 -13.21215 -13.03529 -12.76827 -12.57722 -12.25760 -12.08064 -11.73692 -11.56272 -11.41694 -11.34235 -11.08039 -11.03098 -10.90736 -10.64211 -10.60839 -10.45917 -10.30721 -10.11620 -9.95088 -9.80046 -9.65719 -9.10427 -8.34955 -8.26602 -7.36252 -5.99679 -4.02717 3.30931 3.38466 3.42607 3.93278 4.45348 4.59232 4.62485 4.73660 4.93478 5.04466 5.11571 5.26886 5.28809 5.35721 5.39726 5.47490 5.49736 5.64791 5.73217 5.75673 5.75973 5.82391 5.95219 5.99731 6.02286 6.06521 6.11631 6.16066 6.24436 6.31436 6.34583 6.45302 6.52616 6.56620 6.67972 6.77738 6.94890 7.01096 7.20488 7.60394 7.69503 7.75807 8.02059 8.14153 8.44470 9.04940 9.61538 11.11346 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.004703 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.662194 B = 5952.473624 C = 6673.671176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C -0.008 4.008 10 C 0.065 3.935 11 N -0.560 5.560 12 C 0.067 3.933 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.117 4.117 16 C 0.083 3.917 17 H 0.050 0.950 18 N -0.513 5.513 19 C 0.036 3.964 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.036 3.964 23 C 0.085 3.915 24 H 0.259 0.741 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -18.303 3.101 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.046 4.046 10 C -0.061 4.061 11 N -0.283 5.283 12 C -0.060 4.060 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.026 4.026 17 H 0.067 0.933 18 N -0.238 5.238 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.092 4.092 23 C -0.045 4.045 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.432 -18.150 3.235 18.492 hybrid contribution 0.400 1.117 -0.214 1.206 sum -1.032 -17.033 3.021 17.330 Atomic orbital electron populations 1.69979 1.06081 1.26454 1.50857 1.25021 0.94808 0.99252 0.95276 0.86555 0.80160 0.83857 0.77564 1.19694 1.21035 1.21033 1.21207 0.93028 0.90967 1.50559 0.92587 1.19658 0.94922 0.92696 0.97342 1.22315 0.96642 0.86437 1.00719 1.59172 1.31529 1.35813 1.01818 1.21683 0.97426 0.95396 0.91532 1.21458 0.97404 0.96872 0.99809 1.21886 0.97851 0.99412 0.96004 1.21502 0.97537 1.02474 0.93994 1.21680 0.95864 0.97592 0.87431 0.93260 1.64695 1.27728 1.24192 1.07160 1.23188 1.00321 0.89482 0.96156 1.22465 0.97926 0.99871 0.95856 1.22400 0.97363 0.97687 0.99439 1.22836 0.92931 0.99409 0.94020 1.20804 0.96560 0.93820 0.93337 0.93091 0.96430 0.96577 0.92422 0.91969 0.93794 0.91031 0.92445 0.91201 0.92322 0.92937 0.91943 0.91531 0.90196 0.94009 0.91444 0.90825 0.91814 0.91145 0.93525 0.90228 0.94752 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C -0.01 -0.21 4.43 -27.88 -0.12 -0.33 16 10 C 0.07 1.38 5.08 -3.82 -0.02 1.36 16 11 N -0.56 -10.25 4.11 -240.01 -0.99 -11.24 16 12 C 0.07 1.15 4.11 -4.53 -0.02 1.13 16 13 C -0.12 -1.62 5.41 -27.40 -0.15 -1.77 16 14 C -0.11 -1.42 5.91 -25.69 -0.15 -1.57 16 15 C -0.12 -1.63 4.88 -27.24 -0.13 -1.77 16 16 C 0.08 1.22 1.34 -68.08 -0.09 1.13 16 17 H 0.05 0.74 6.97 -51.93 -0.36 0.38 16 18 N -0.51 -7.01 5.11 -222.95 -1.14 -8.15 16 19 C 0.04 0.40 5.60 -1.90 -0.01 0.39 16 20 C -0.12 -1.17 7.06 -24.87 -0.18 -1.34 16 21 C -0.13 -1.30 6.93 -25.37 -0.18 -1.48 16 22 C 0.04 0.45 5.35 -2.76 -0.01 0.44 16 23 C 0.09 1.52 4.03 -6.74 -0.03 1.49 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.48 6.96 -51.93 -0.36 0.12 16 26 H 0.02 0.45 6.99 -51.93 -0.36 0.09 16 27 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 28 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 29 H 0.04 0.82 6.44 -51.93 -0.33 0.49 16 30 H 0.07 1.28 7.73 -51.93 -0.40 0.87 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.99 7.26 -51.93 -0.38 0.62 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.79 5.90 -51.93 -0.31 0.48 16 36 H 0.07 1.07 6.58 -51.93 -0.34 0.73 16 37 H 0.08 0.85 7.01 -51.93 -0.36 0.49 16 38 H 0.04 0.45 7.99 -51.94 -0.42 0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.60 7.71 -51.93 -0.40 0.20 16 44 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 45 H 0.03 0.72 6.27 -51.93 -0.33 0.40 16 46 H 0.07 1.19 6.31 -51.93 -0.33 0.86 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -29.79 334.99 -11.28 -41.06 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.41 Total: -1.24 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.50 Total: -15.83 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -1.39 Total: -45.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.79 -11.28 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069874840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.506 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds