Wall clock time and date at job start Mon Mar 30 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 H 1.08993 * 109.47261 * 185.15778 * 3 2 1 5 5 C 1.50706 * 109.46994 * 305.15955 * 3 2 1 6 6 H 1.07997 * 120.00333 * 120.00455 * 5 3 2 7 7 C 1.37884 * 119.99769 * 299.99689 * 5 3 2 8 8 N 1.31516 * 119.99864 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46982 * 60.00127 * 9 7 5 11 11 H 1.48493 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46906 * 300.00324 * 9 7 5 13 13 N 1.46903 * 109.47151 * 65.15530 * 3 2 1 14 14 C 1.46897 * 110.99871 * 85.78582 * 13 3 2 15 15 C 1.50697 * 109.46950 * 174.82287 * 14 13 3 16 16 C 1.34384 * 126.52592 * 95.02618 * 15 14 13 17 17 N 1.34390 * 108.31785 * 179.97438 * 16 15 14 18 18 C 1.31202 * 109.30233 * 359.97438 * 17 16 15 19 19 N 1.38500 * 125.78762 * 179.97438 * 18 17 16 20 20 C 1.46897 * 111.00519 * 304.52384 * 19 18 17 21 21 C 1.46904 * 110.99629 * 68.47619 * 19 18 17 22 22 N 1.36027 * 108.42112 * 359.73877 * 18 17 16 23 23 C 1.46493 * 126.49448 * 180.28752 * 22 18 17 24 24 H 1.09005 * 109.47143 * 174.83899 * 1 2 3 25 25 H 1.09005 * 109.46957 * 54.84712 * 1 2 3 26 26 H 1.08998 * 109.47494 * 294.84251 * 1 2 3 27 27 H 1.09000 * 109.46637 * 119.99670 * 2 1 3 28 28 H 1.09000 * 109.47177 * 240.00237 * 2 1 3 29 29 H 0.96994 * 120.00003 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99938 * 321.83091 * 13 3 2 31 31 H 1.09003 * 109.46657 * 294.82369 * 14 13 3 32 32 H 1.08997 * 109.47038 * 54.81836 * 14 13 3 33 33 H 1.07995 * 125.84038 * 359.97438 * 16 15 14 34 34 H 1.09002 * 109.47164 * 59.99317 * 20 19 18 35 35 H 1.08993 * 109.47644 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46700 * 300.00003 * 20 19 18 37 37 H 1.09003 * 109.47129 * 64.58761 * 21 19 18 38 38 H 1.09002 * 109.47179 * 184.58414 * 21 19 18 39 39 H 1.08992 * 109.47183 * 304.58482 * 21 19 18 40 40 H 1.08997 * 109.47522 * 274.98349 * 23 22 18 41 41 H 1.09004 * 109.47158 * 34.98550 * 23 22 18 42 42 H 1.08997 * 109.47253 * 154.98324 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4359 2.1888 -1.1616 6 1 0.8268 3.0628 -0.9841 7 6 1.6612 1.7559 -2.4512 8 7 2.4026 0.6915 -2.6675 9 14 0.9131 2.6813 -3.8912 10 1 1.4086 4.0812 -3.8910 11 1 1.3032 2.0189 -5.1616 12 1 -0.5665 2.6799 -3.7655 13 7 1.6545 2.0982 1.2568 14 6 2.6416 1.8346 2.3123 15 6 2.2816 2.6232 3.5450 16 6 1.5694 2.1833 4.5963 17 7 1.4675 3.1850 5.4864 18 6 2.0953 4.2406 5.0249 19 7 2.2039 5.4632 5.6667 20 6 0.8791 5.9988 6.0069 21 6 3.0515 5.3568 6.8619 22 7 2.6259 3.9291 3.8118 23 6 3.4116 4.8163 2.9507 24 1 -0.3634 -1.0235 -0.0924 25 1 -0.3633 0.5917 -0.8403 26 1 -0.3634 0.4317 0.9325 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.5608 0.3867 -3.5746 30 1 0.7311 1.8119 1.5456 31 1 2.6444 0.7707 2.5495 32 1 3.6315 2.1323 1.9666 33 1 1.1506 1.1940 4.7069 34 1 0.3640 5.3016 6.6678 35 1 0.9935 6.9588 6.5101 36 1 0.2965 6.1331 5.0954 37 1 4.0691 5.1036 6.5643 38 1 3.0542 6.3096 7.3914 39 1 2.6601 4.5784 7.5167 40 1 2.7393 5.4190 2.3400 41 1 4.0266 5.4709 3.5682 42 1 4.0535 4.2192 2.3030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070144136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:28 Heat of formation + Delta-G solvation = 73.032371 kcal Electronic energy + Delta-G solvation = -20748.931971 eV Core-core repulsion = 17765.406625 eV Total energy + Delta-G solvation = -2983.525345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.79822 -37.21492 -36.39444 -33.68597 -32.79267 -30.97153 -28.80448 -27.74587 -26.75197 -26.43099 -24.71776 -23.52509 -23.11933 -20.32331 -19.45636 -19.31050 -17.07132 -16.20944 -15.93691 -15.42237 -14.88439 -14.76068 -14.38526 -14.06488 -13.63747 -13.46824 -13.01094 -12.80707 -12.65229 -12.46528 -12.44695 -12.24463 -12.10192 -11.85141 -11.83212 -11.50576 -10.92622 -10.78049 -10.54258 -10.04157 -10.03348 -9.73546 -9.57501 -9.26505 -9.04028 -8.88605 -8.36938 -7.98068 -7.28081 -6.00213 -4.01993 2.19325 2.76083 3.25788 3.32326 3.36976 3.40280 3.94276 4.42433 4.86273 5.03997 5.08028 5.24732 5.30407 5.31453 5.35187 5.45861 5.47915 5.53868 5.69049 5.75139 5.78150 5.80668 6.05456 6.10150 6.32074 6.36088 6.38123 6.55696 6.63600 6.78904 6.88631 7.04375 7.22705 7.24905 7.50595 7.65502 7.68086 7.85273 8.23755 8.25044 8.48810 8.56780 9.03195 9.61721 11.06596 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.004404 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.495508 B = 6356.549891 C = 6786.942054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.130 3.870 15 C 0.015 3.985 16 C -0.029 4.029 17 N -0.508 5.508 18 C 0.351 3.649 19 N -0.472 5.472 20 C 0.039 3.961 21 C 0.035 3.965 22 N -0.431 5.431 23 C 0.085 3.915 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 6.589 14.249 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.001 4.001 15 C -0.101 4.101 16 C -0.179 4.179 17 N -0.231 5.231 18 C 0.000 4.000 19 N -0.196 5.196 20 C -0.109 4.109 21 C -0.112 4.112 22 N -0.115 5.115 23 C -0.058 4.058 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.183 0.817 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.820 7.500 14.240 16.197 hybrid contribution -0.510 -0.965 -0.958 1.452 sum 1.310 6.535 13.282 14.860 Atomic orbital electron populations 1.21598 0.97616 0.98731 1.00828 1.22111 0.95104 1.00991 1.00324 1.19235 0.95913 0.88702 0.85259 0.94987 1.20998 1.30646 1.11527 0.89604 0.92160 1.24901 0.95510 0.95149 0.98694 1.69866 1.38926 1.23902 1.20844 0.86632 0.79600 0.79946 0.81639 1.20399 1.21496 1.20373 1.60849 1.03831 1.63418 1.03112 1.20291 0.97492 0.94945 0.87397 1.21442 1.04547 0.84610 0.99540 1.21839 1.04836 0.99152 0.92039 1.70550 1.22263 0.99724 1.30572 1.20597 1.00830 0.91619 0.86943 1.58650 1.15641 1.19176 1.26169 1.22342 0.87754 0.99228 1.01530 1.22398 0.96867 1.01784 0.90199 1.45240 1.40001 1.10934 1.15369 1.21905 0.95828 0.93873 0.94159 0.95736 0.91266 0.95327 0.96984 0.88870 0.93032 0.85028 0.93637 0.91007 0.81743 0.93663 0.90732 0.91233 0.91523 0.90624 0.93885 0.90287 0.90138 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.15 -3.30 5.51 -26.73 -0.15 -3.44 16 3 C 0.22 5.11 2.33 -68.86 -0.16 4.95 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.49 -12.83 7.25 -34.43 -0.25 -13.08 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.67 11.38 55.43 0.63 -24.04 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.85 6.19 -109.22 -0.68 -14.52 16 14 C 0.13 2.25 5.74 -4.98 -0.03 2.23 16 15 C 0.02 0.25 6.52 -81.33 -0.53 -0.28 16 16 C -0.03 -0.48 11.76 -17.79 -0.21 -0.69 16 17 N -0.51 -8.65 11.04 -13.91 -0.15 -8.80 16 18 C 0.35 5.49 6.36 -319.60 -2.03 3.46 16 19 N -0.47 -6.01 4.98 -190.48 -0.95 -6.96 16 20 C 0.04 0.43 9.46 60.06 0.57 1.00 16 21 C 0.04 0.36 9.57 60.07 0.57 0.94 16 22 N -0.43 -6.79 3.20 -120.31 -0.39 -7.17 16 23 C 0.09 1.12 11.00 59.84 0.66 1.78 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.60 6.85 -51.93 -0.36 1.25 16 26 H 0.03 0.54 6.63 -51.93 -0.34 0.20 16 27 H 0.01 0.24 7.49 -51.93 -0.39 -0.15 16 28 H 0.09 2.38 6.22 -51.93 -0.32 2.06 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.33 6.70 6.69 -39.29 -0.26 6.44 16 31 H 0.05 0.77 7.53 -51.93 -0.39 0.38 16 32 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 33 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 34 H 0.04 0.54 8.00 -51.93 -0.42 0.12 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.12 7.19 -51.93 -0.37 0.75 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -29.01 338.39 -9.72 -38.73 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.96 Total: 5.77 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.30 Total: -4.07 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -1.53 Total: -61.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.01 -9.72 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070144136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.765 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds