Wall clock time and date at job start Mon Mar 30 2020 00:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 H 1.08993 * 109.47261 * 185.15778 * 3 2 1 5 5 C 1.50706 * 109.46994 * 305.15955 * 3 2 1 6 6 H 1.07997 * 120.00333 * 120.00455 * 5 3 2 7 7 C 1.37884 * 119.99769 * 299.99689 * 5 3 2 8 8 N 1.31516 * 119.99864 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46982 * 60.00127 * 9 7 5 11 11 H 1.48493 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46906 * 300.00324 * 9 7 5 13 13 N 1.46903 * 109.47151 * 65.15530 * 3 2 1 14 14 C 1.46897 * 110.99871 * 85.78582 * 13 3 2 15 15 C 1.50697 * 109.46950 * 174.82287 * 14 13 3 16 16 C 1.34384 * 126.52592 * 95.02618 * 15 14 13 17 17 N 1.34390 * 108.31785 * 179.97438 * 16 15 14 18 18 C 1.31202 * 109.30233 * 359.97438 * 17 16 15 19 19 N 1.38500 * 125.78762 * 179.97438 * 18 17 16 20 20 C 1.46897 * 111.00519 * 304.52384 * 19 18 17 21 21 C 1.46904 * 110.99629 * 68.47619 * 19 18 17 22 22 N 1.36027 * 108.42112 * 359.73877 * 18 17 16 23 23 C 1.46493 * 126.49448 * 180.28752 * 22 18 17 24 24 H 1.09005 * 109.47143 * 174.83899 * 1 2 3 25 25 H 1.09005 * 109.46957 * 54.84712 * 1 2 3 26 26 H 1.08998 * 109.47494 * 294.84251 * 1 2 3 27 27 H 1.09000 * 109.46637 * 119.99670 * 2 1 3 28 28 H 1.09000 * 109.47177 * 240.00237 * 2 1 3 29 29 H 0.96994 * 120.00003 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99938 * 321.83091 * 13 3 2 31 31 H 1.09003 * 109.46657 * 294.82369 * 14 13 3 32 32 H 1.08997 * 109.47038 * 54.81836 * 14 13 3 33 33 H 1.07995 * 125.84038 * 359.97438 * 16 15 14 34 34 H 1.09002 * 109.47164 * 59.99317 * 20 19 18 35 35 H 1.08993 * 109.47644 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46700 * 300.00003 * 20 19 18 37 37 H 1.09003 * 109.47129 * 64.58761 * 21 19 18 38 38 H 1.09002 * 109.47179 * 184.58414 * 21 19 18 39 39 H 1.08992 * 109.47183 * 304.58482 * 21 19 18 40 40 H 1.08997 * 109.47522 * 274.98349 * 23 22 18 41 41 H 1.09004 * 109.47158 * 34.98550 * 23 22 18 42 42 H 1.08997 * 109.47253 * 154.98324 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4359 2.1888 -1.1616 6 1 0.8268 3.0628 -0.9841 7 6 1.6612 1.7559 -2.4512 8 7 2.4026 0.6915 -2.6675 9 14 0.9131 2.6813 -3.8912 10 1 1.4086 4.0812 -3.8910 11 1 1.3032 2.0189 -5.1616 12 1 -0.5665 2.6799 -3.7655 13 7 1.6545 2.0982 1.2568 14 6 2.6416 1.8346 2.3123 15 6 2.2816 2.6232 3.5450 16 6 1.5694 2.1833 4.5963 17 7 1.4675 3.1850 5.4864 18 6 2.0953 4.2406 5.0249 19 7 2.2039 5.4632 5.6667 20 6 0.8791 5.9988 6.0069 21 6 3.0515 5.3568 6.8619 22 7 2.6259 3.9291 3.8118 23 6 3.4116 4.8163 2.9507 24 1 -0.3634 -1.0235 -0.0924 25 1 -0.3633 0.5917 -0.8403 26 1 -0.3634 0.4317 0.9325 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.5608 0.3867 -3.5746 30 1 0.7311 1.8119 1.5456 31 1 2.6444 0.7707 2.5495 32 1 3.6315 2.1323 1.9666 33 1 1.1506 1.1940 4.7069 34 1 0.3640 5.3016 6.6678 35 1 0.9935 6.9588 6.5101 36 1 0.2965 6.1331 5.0954 37 1 4.0691 5.1036 6.5643 38 1 3.0542 6.3096 7.3914 39 1 2.6601 4.5784 7.5167 40 1 2.7393 5.4190 2.3400 41 1 4.0266 5.4709 3.5682 42 1 4.0535 4.2192 2.3030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070144136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:27 Heat of formation + Delta-G solvation = 55.553652 kcal Electronic energy + Delta-G solvation = -20749.689905 eV Core-core repulsion = 17765.406625 eV Total energy + Delta-G solvation = -2984.283279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00881 -38.52276 -37.82550 -34.94464 -34.53361 -32.73466 -30.25682 -28.58640 -28.19046 -27.86267 -26.08790 -25.08911 -24.59321 -21.60132 -21.10020 -20.64496 -18.37686 -17.92261 -17.09574 -16.82079 -16.62523 -16.09308 -15.65602 -15.28619 -15.09914 -14.74232 -14.51226 -14.35648 -14.17541 -13.76803 -13.61165 -13.50479 -13.15688 -13.10893 -12.94030 -12.77745 -12.68186 -12.59086 -12.42927 -11.90930 -11.70916 -11.41576 -11.12007 -10.95427 -10.48318 -10.40748 -9.88965 -9.25745 -8.93187 -8.03661 -6.11537 0.95923 1.45054 1.45703 1.52857 1.64301 2.00821 2.47251 2.93313 3.25343 3.65499 3.82848 4.00995 4.04105 4.29743 4.33577 4.39121 4.44374 4.58256 4.59282 4.62760 4.64518 4.66259 4.74662 4.79760 4.88466 4.91262 4.93920 5.13867 5.19526 5.37109 5.45123 5.59567 5.72481 5.74469 5.76786 5.81447 5.87481 6.33379 6.50999 6.67655 6.79946 6.99023 7.03371 7.55887 9.01064 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.004404 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.495508 B = 6356.549891 C = 6786.942054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.224 3.776 4 H 0.004 0.996 5 C -0.498 4.498 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.139 3.861 15 C 0.000 4.000 16 C -0.034 4.034 17 N -0.531 5.531 18 C 0.355 3.645 19 N -0.476 5.476 20 C 0.041 3.959 21 C 0.037 3.963 22 N -0.438 5.438 23 C 0.085 3.915 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.333 0.667 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.179 0.821 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 7.644 15.369 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.116 3.884 4 H 0.022 0.978 5 C -0.537 4.537 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.009 3.991 15 C -0.116 4.116 16 C -0.183 4.183 17 N -0.255 5.255 18 C 0.004 3.996 19 N -0.201 5.201 20 C -0.107 4.107 21 C -0.110 4.110 22 N -0.122 5.122 23 C -0.057 4.057 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.053 0.947 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.546 8.565 15.369 17.662 hybrid contribution -0.401 -1.238 -1.216 1.781 sum 1.145 7.327 14.153 15.978 Atomic orbital electron populations 1.21483 0.96205 0.99527 1.00693 1.21966 0.96287 0.99988 0.99664 1.18968 0.93908 0.89373 0.86171 0.97829 1.21203 1.30374 1.11296 0.90812 0.93297 1.25519 0.95931 0.95839 1.00824 1.69987 1.39886 1.24947 1.21080 0.85779 0.78952 0.78836 0.79027 1.20173 1.21300 1.19994 1.60706 1.04531 1.63163 1.02943 1.20169 0.96417 0.95676 0.86858 1.21261 1.05695 0.85328 0.99341 1.22149 1.04460 0.99798 0.91888 1.70579 1.23384 1.00352 1.31151 1.21051 0.99520 0.92236 0.86814 1.58852 1.16635 1.17441 1.27141 1.22395 0.86799 1.00448 1.01008 1.22476 0.96202 1.03181 0.89178 1.45423 1.40112 1.10900 1.15719 1.22009 0.95665 0.93725 0.94294 0.93995 0.93810 0.93416 0.95156 0.91905 0.93212 0.84814 0.92758 0.91383 0.80395 0.94693 0.87391 0.92420 0.91454 0.87473 0.95081 0.90822 0.87798 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.40 71.98 0.68 -4.30 16 2 C -0.14 -6.27 5.51 30.59 0.17 -6.10 16 3 C 0.22 10.66 2.33 44.17 0.10 10.76 16 4 H 0.00 0.20 7.70 -2.39 -0.02 0.18 16 5 C -0.50 -26.33 7.25 25.60 0.19 -26.15 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.93 5.28 84.66 0.45 1.37 16 8 N -0.92 -51.19 11.38 21.45 0.24 -50.94 16 9 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.68 -27.50 6.19 -499.46 -3.09 -30.59 16 14 C 0.14 4.77 5.74 85.56 0.49 5.26 16 15 C 0.00 0.01 6.52 40.76 0.27 0.27 16 16 C -0.03 -1.08 11.76 83.42 0.98 -0.10 16 17 N -0.53 -17.54 11.04 -197.94 -2.19 -19.73 16 18 C 0.36 10.65 6.36 260.37 1.66 12.30 16 19 N -0.48 -11.12 4.98 -756.54 -3.77 -14.89 16 20 C 0.04 0.82 9.46 127.69 1.21 2.02 16 21 C 0.04 0.67 9.57 127.69 1.22 1.89 16 22 N -0.44 -13.32 3.20 -534.54 -1.71 -15.03 16 23 C 0.08 2.15 11.00 127.77 1.41 3.55 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.04 2.00 6.85 -2.38 -0.02 1.98 16 26 H 0.05 1.74 6.63 -2.39 -0.02 1.72 16 27 H 0.03 1.22 7.49 -2.39 -0.02 1.20 16 28 H 0.06 3.24 6.22 -2.39 -0.01 3.22 16 29 H 0.26 13.93 8.31 -92.71 -0.77 13.15 16 30 H 0.33 13.17 6.69 -89.70 -0.60 12.57 16 31 H 0.05 1.77 7.53 -2.39 -0.02 1.75 16 32 H 0.07 2.37 7.11 -2.39 -0.02 2.35 16 33 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 35 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.26 8.04 -2.39 -0.02 1.25 16 39 H 0.03 0.64 8.11 -2.39 -0.02 0.62 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 42 H 0.08 2.14 7.19 -2.39 -0.02 2.12 16 Total: -1.00 -61.57 338.39 0.72 -60.85 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.39 Total: 24.42 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 8.81 Total: 0.79 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -10.51 Total: -131.18 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.57 0.72 -60.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070144136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.406 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds