Wall clock time and date at job start Mon Mar 30 2020 00:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47199 * 2 1 4 4 H 1.08995 * 109.46995 * 177.79009 * 3 2 1 5 5 C 1.50701 * 109.47123 * 57.78839 * 3 2 1 6 6 H 1.08005 * 120.00265 * 240.00571 * 5 3 2 7 7 C 1.37877 * 120.00094 * 59.99881 * 5 3 2 8 8 N 1.31509 * 120.00044 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00107 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46957 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46925 * 120.00081 * 9 7 5 12 12 H 1.48497 * 109.47267 * 240.00139 * 9 7 5 13 13 N 1.46898 * 109.46721 * 297.79242 * 3 2 1 14 14 C 1.46904 * 110.99718 * 273.70400 * 13 3 2 15 15 C 1.50701 * 109.47191 * 175.62644 * 14 13 3 16 16 C 1.34372 * 126.52433 * 95.00243 * 15 14 13 17 17 N 1.34398 * 108.31953 * 179.74411 * 16 15 14 18 18 C 1.31200 * 109.30013 * 0.43488 * 17 16 15 19 19 N 1.38495 * 125.79063 * 179.83580 * 18 17 16 20 20 C 1.46902 * 110.99767 * 359.69116 * 19 18 17 21 21 C 1.46900 * 111.00175 * 123.64050 * 19 18 17 22 22 N 1.36030 * 108.42279 * 359.56759 * 18 17 16 23 23 C 1.46494 * 126.49936 * 180.24370 * 22 18 17 24 24 H 1.09006 * 109.47396 * 294.21980 * 1 2 3 25 25 H 1.09002 * 109.47368 * 54.22160 * 1 2 3 26 26 H 1.09000 * 109.47263 * 174.21957 * 1 2 3 27 27 H 1.08995 * 109.47411 * 240.00295 * 2 1 3 28 28 H 1.09001 * 109.47242 * 119.99347 * 2 1 3 29 29 H 0.97000 * 120.00857 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00211 * 149.76101 * 13 3 2 31 31 H 1.09007 * 109.46805 * 55.63187 * 14 13 3 32 32 H 1.08994 * 109.47358 * 295.63128 * 14 13 3 33 33 H 1.07998 * 125.84320 * 0.02562 * 16 15 14 34 34 H 1.09008 * 109.46816 * 183.95955 * 20 19 18 35 35 H 1.08996 * 109.47465 * 63.95343 * 20 19 18 36 36 H 1.09009 * 109.46837 * 303.95032 * 20 19 18 37 37 H 1.08992 * 109.47496 * 300.00105 * 21 19 18 38 38 H 1.09000 * 109.46698 * 60.00227 * 21 19 18 39 39 H 1.09005 * 109.46973 * 179.97438 * 21 19 18 40 40 H 1.09004 * 109.46886 * 90.02506 * 23 22 18 41 41 H 1.08996 * 109.47566 * 210.02824 * 23 22 18 42 42 H 1.09002 * 109.47272 * 330.02972 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4428 0.0396 5 6 1.4934 2.1686 1.2021 6 1 0.8766 3.0452 1.0693 7 6 1.7805 1.7138 2.4717 8 7 2.5318 0.6467 2.6335 9 14 1.1036 2.6142 3.9618 10 1 0.2941 3.7754 3.5129 11 1 0.2493 1.6915 4.7517 12 1 2.2288 3.0911 4.8053 13 7 1.5943 2.1194 -1.2252 14 6 2.5353 1.8842 -2.3285 15 6 1.9928 2.5015 -3.5917 16 6 2.2850 3.7206 -4.0756 17 7 1.6042 3.8947 -5.2212 18 6 0.8860 2.8243 -5.4658 19 7 0.0525 2.6400 -6.5564 20 6 0.0606 3.8206 -7.4305 21 6 0.4219 1.4299 -7.3028 22 7 1.1033 1.9239 -4.4696 23 6 0.5043 0.5922 -4.3528 24 1 -0.3634 0.4216 0.9372 25 1 -0.3634 0.6008 -0.8337 26 1 -0.3634 -1.0224 -0.1035 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.7342 0.3268 3.5266 30 1 1.4639 3.1072 -1.0657 31 1 2.6634 0.8115 -2.4743 32 1 3.4977 2.3356 -2.0878 33 1 2.9560 4.4361 -3.6238 34 1 -0.6546 3.6777 -8.2407 35 1 1.0585 3.9578 -7.8468 36 1 -0.2165 4.7025 -6.8527 37 1 1.4480 1.5216 -7.6587 38 1 0.3401 0.5611 -6.6497 39 1 -0.2487 1.3089 -8.1536 40 1 1.1395 -0.1373 -4.8552 41 1 0.4096 0.3274 -3.2997 42 1 -0.4821 0.5955 -4.8166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070144138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:30 Heat of formation + Delta-G solvation = 74.431657 kcal Electronic energy + Delta-G solvation = -20875.384562 eV Core-core repulsion = 17891.919895 eV Total energy + Delta-G solvation = -2983.464668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84557 -37.26615 -36.21659 -33.85005 -32.81884 -30.96481 -28.92104 -27.83527 -26.92765 -26.41778 -24.65565 -23.40573 -23.07054 -20.31563 -19.56619 -19.02040 -17.10874 -16.42837 -15.95604 -15.38902 -15.00338 -14.68003 -14.53857 -13.98843 -13.56550 -13.47034 -13.38873 -12.82180 -12.66973 -12.56980 -12.47681 -12.18869 -12.09046 -11.85625 -11.66890 -11.31164 -10.96818 -10.77955 -10.44226 -10.18682 -9.87931 -9.68458 -9.52549 -9.43696 -9.27998 -8.82427 -8.50831 -7.56720 -7.28944 -6.04960 -4.10023 2.23169 2.73156 3.27255 3.29747 3.35905 3.40329 3.85807 4.39121 4.75844 4.93158 5.03533 5.08843 5.23913 5.26156 5.27553 5.36894 5.44297 5.46316 5.52311 5.70782 5.78601 5.84787 5.98217 6.11299 6.30660 6.44453 6.54588 6.63370 6.76581 6.79898 7.08568 7.14013 7.23955 7.43976 7.63528 7.67913 7.76914 7.78964 8.20388 8.30200 8.34579 8.61344 8.98847 9.55119 11.01127 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.033759 B = 0.004275 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.212223 B = 6548.527274 C = 6864.095836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.002 0.998 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.132 3.868 15 C 0.006 3.994 16 C -0.023 4.023 17 N -0.516 5.516 18 C 0.370 3.630 19 N -0.462 5.462 20 C 0.047 3.953 21 C 0.017 3.983 22 N -0.450 5.450 23 C 0.073 3.927 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.012 0.988 27 H 0.007 0.993 28 H 0.086 0.914 29 H 0.260 0.740 30 H 0.336 0.664 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.167 0.833 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -0.441 -16.821 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.314 5.314 14 C 0.001 3.999 15 C -0.109 4.109 16 C -0.170 4.170 17 N -0.240 5.240 18 C 0.018 3.982 19 N -0.184 5.184 20 C -0.100 4.100 21 C -0.130 4.130 22 N -0.137 5.137 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.565 -0.598 -17.166 17.543 hybrid contribution 1.007 0.259 1.411 1.753 sum -2.558 -0.338 -15.755 15.965 Atomic orbital electron populations 1.21443 0.97518 0.97006 1.01658 1.21431 0.95031 0.98253 0.99229 1.19146 0.93456 0.91557 0.85036 0.98016 1.21209 1.31577 1.11962 0.90253 0.92205 1.24869 0.95052 0.95001 0.98854 1.69886 1.37493 1.23202 1.22231 0.86527 0.78773 0.79829 0.82832 1.19736 1.21042 1.21117 1.60714 1.46747 1.16890 1.07071 1.20265 0.93753 0.99260 0.86582 1.21343 0.98041 0.95826 0.95679 1.21837 1.04369 0.95921 0.94913 1.70538 1.11463 1.23703 1.18341 1.20920 0.97728 0.87743 0.91800 1.58725 1.46330 1.06202 1.07177 1.22209 1.01008 0.91395 0.95428 1.22649 1.00040 0.91767 0.98581 1.44998 1.35389 1.14557 1.18711 1.22084 0.98424 0.80942 1.05493 0.92852 0.93621 0.96887 0.97389 0.89580 0.93008 0.84660 0.91265 0.93618 0.81622 0.90901 0.94033 0.90055 0.94489 0.90711 0.89949 0.91534 0.88158 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.45 37.15 0.35 -2.22 16 2 C -0.10 -2.33 5.58 -26.73 -0.15 -2.48 16 3 C 0.22 5.12 2.31 -68.86 -0.16 4.96 16 4 H 0.00 0.06 7.83 -51.93 -0.41 -0.35 16 5 C -0.51 -13.38 7.33 -34.44 -0.25 -13.63 16 6 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.59 11.34 55.43 0.63 -23.96 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.68 -13.79 5.50 -109.22 -0.60 -14.40 16 14 C 0.13 2.30 5.54 -4.97 -0.03 2.28 16 15 C 0.01 0.09 6.52 -81.33 -0.53 -0.44 16 16 C -0.02 -0.38 11.76 -17.79 -0.21 -0.59 16 17 N -0.52 -8.83 10.27 -13.92 -0.14 -8.97 16 18 C 0.37 5.76 7.13 -319.61 -2.28 3.48 16 19 N -0.46 -5.79 5.02 -190.47 -0.96 -6.74 16 20 C 0.05 0.50 8.96 60.07 0.54 1.04 16 21 C 0.02 0.16 9.31 60.06 0.56 0.72 16 22 N -0.45 -6.88 3.20 -120.31 -0.38 -7.27 16 23 C 0.07 0.90 9.18 59.84 0.55 1.45 16 24 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 25 H 0.04 0.95 7.50 -51.93 -0.39 0.56 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.01 0.16 7.44 -51.93 -0.39 -0.23 16 28 H 0.09 2.24 6.13 -51.93 -0.32 1.92 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.34 6.97 8.23 -39.29 -0.32 6.64 16 31 H 0.07 1.20 7.36 -51.93 -0.38 0.82 16 32 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.98 7.97 -51.92 -0.41 0.56 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.66 5.21 -51.93 -0.27 0.39 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 41 H 0.10 1.40 7.91 -51.93 -0.41 0.98 16 42 H 0.08 0.93 7.48 -51.93 -0.39 0.54 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -29.38 335.57 -10.09 -39.47 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.97 Total: 4.72 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.70 Total: -3.81 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -1.46 Total: -61.34 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.38 -10.09 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070144138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.900 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds