Wall clock time and date at job start Mon Mar 30 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47244 * 2 1 4 4 C 1.53000 * 109.47635 * 239.99704 * 2 1 3 5 5 C 1.52993 * 109.47177 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47610 * 59.99860 * 5 4 2 7 7 C 1.53000 * 109.46964 * 300.00270 * 6 5 4 8 8 H 1.08999 * 109.47046 * 299.99236 * 7 6 5 9 9 N 1.46902 * 109.47144 * 179.97438 * 7 6 5 10 10 C 1.46963 * 110.99996 * 59.99841 * 9 7 6 11 11 C 1.53045 * 109.36352 * 183.19019 * 10 9 7 12 12 N 1.46957 * 109.36439 * 301.59704 * 11 10 9 13 13 C 1.46904 * 110.99711 * 183.19065 * 12 11 10 14 14 C 1.50703 * 109.46874 * 170.00041 * 13 12 11 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.46947 * 110.88115 * 59.32501 * 12 11 10 23 23 C 1.46957 * 111.00091 * 183.79744 * 9 7 6 24 24 C 1.52992 * 109.47387 * 59.99789 * 7 6 5 25 25 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47607 * 300.00600 * 1 2 3 27 27 H 1.09006 * 109.46670 * 60.00555 * 1 2 3 28 28 H 1.08998 * 109.46708 * 59.99953 * 4 2 1 29 29 H 1.09002 * 109.46711 * 300.00036 * 4 2 1 30 30 H 1.09002 * 109.47176 * 299.99563 * 5 4 2 31 31 H 1.09003 * 109.46983 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47306 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47094 * 59.99652 * 6 5 4 34 34 H 1.08995 * 109.48964 * 63.21635 * 10 9 7 35 35 H 1.09005 * 109.50617 * 303.16763 * 10 9 7 36 36 H 1.09001 * 109.48601 * 181.63109 * 11 10 9 37 37 H 1.09000 * 109.49146 * 61.56972 * 11 10 9 38 38 H 1.09003 * 109.47066 * 50.00318 * 13 12 11 39 39 H 1.08996 * 109.47319 * 289.99791 * 13 12 11 40 40 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 41 41 H 1.09001 * 109.49489 * 60.64422 * 22 12 11 42 42 H 1.08999 * 109.48983 * 180.71429 * 22 12 11 43 43 H 1.09004 * 109.48756 * 296.77647 * 23 9 7 44 44 H 1.08997 * 109.48797 * 56.82525 * 23 9 7 45 45 H 1.08999 * 109.47479 * 59.99712 * 24 7 6 46 46 H 1.08998 * 109.47359 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2487 6 6 4.0796 -1.4432 0.0005 7 6 3.5694 -0.7220 1.2497 8 1 3.9331 0.3056 1.2499 9 7 4.0581 -1.4150 2.4492 10 6 5.5272 -1.4356 2.4838 11 6 5.9950 -2.2330 3.7035 12 7 5.4508 -1.6210 4.9237 13 6 5.9396 -2.3142 6.1232 14 6 5.5664 -1.5207 7.3489 15 1 5.0211 -0.5940 7.2470 16 6 5.9221 -1.9772 8.6003 17 7 6.5865 -3.1054 8.7245 18 14 5.4589 -0.9941 10.1196 19 1 6.5439 -0.0306 10.4356 20 1 5.2670 -1.9170 11.2670 21 1 4.1977 -0.2529 9.8642 22 6 3.9819 -1.6005 4.8892 23 6 3.5140 -0.8030 3.6695 24 6 2.0395 -0.7215 1.2493 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6768 -0.2075 -2.1391 29 1 1.6768 -1.7490 -1.2491 30 1 3.9337 0.3058 -1.2486 31 1 3.9334 -1.2353 -2.1389 32 1 5.1696 -1.4440 0.0005 33 1 3.7159 -2.4708 0.0004 34 1 5.9037 -0.4149 2.5504 35 1 5.9062 -1.9043 1.5756 36 1 7.0841 -2.2251 3.7472 37 1 5.6414 -3.2610 3.6233 38 1 7.0239 -2.4119 6.0699 39 1 5.4878 -3.3045 6.1801 40 1 6.8266 -3.6160 7.9355 41 1 3.6053 -2.6213 4.8225 42 1 3.6033 -1.1315 5.7973 43 1 3.8677 0.2249 3.7496 44 1 2.4249 -0.8106 3.6255 45 1 1.6758 -1.7490 1.2491 46 1 1.6761 -0.2072 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078527234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:43 Heat of formation + Delta-G solvation = -17.495119 kcal Electronic energy + Delta-G solvation = -21266.199207 eV Core-core repulsion = 18382.288638 eV Total energy + Delta-G solvation = -2883.910568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.77564 -37.81735 -34.97698 -32.83312 -32.34850 -30.52696 -29.81763 -26.96217 -26.52272 -24.48287 -23.35236 -21.96930 -21.59793 -20.70394 -19.82770 -19.20683 -16.78341 -16.22982 -15.08017 -14.94690 -14.64956 -14.43127 -14.40173 -13.99697 -13.77972 -13.65112 -13.25382 -13.19521 -12.63332 -12.56717 -12.34743 -11.84940 -11.71656 -11.54662 -11.23835 -11.13385 -11.02907 -10.98136 -10.79249 -10.68019 -10.62453 -10.46086 -10.31811 -10.10348 -9.90991 -9.83525 -8.64744 -8.34848 -8.08940 -7.28645 -6.34888 -4.03418 3.45455 3.48920 3.64801 3.97172 4.52023 4.53722 4.54935 4.76215 4.87793 4.98578 5.07100 5.20745 5.28244 5.32413 5.36764 5.40984 5.47997 5.49458 5.54715 5.58119 5.66581 5.74368 5.78960 5.81255 5.86791 5.90355 5.96970 5.99054 6.05101 6.11601 6.13339 6.17445 6.26904 6.34976 6.41563 6.57015 6.65999 7.01366 7.11312 7.32141 7.34241 7.83395 8.03276 8.35386 8.61118 8.89571 9.67492 11.04408 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.003869 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.562731 B = 7235.508070 C = 7833.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.113 4.113 7 C 0.087 3.913 8 H 0.036 0.964 9 N -0.536 5.536 10 C 0.060 3.940 11 C 0.055 3.945 12 N -0.532 5.532 13 C 0.183 3.817 14 C -0.587 4.587 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.075 2.925 19 H -0.288 1.288 20 H -0.285 1.285 21 H -0.289 1.289 22 C 0.069 3.931 23 C 0.056 3.944 24 C -0.108 4.108 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.019 0.981 39 H -0.019 1.019 40 H 0.267 0.733 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 5.129 -19.862 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.022 4.022 8 H 0.054 0.946 9 N -0.261 5.261 10 C -0.068 4.068 11 C -0.074 4.074 12 N -0.257 5.257 13 C 0.057 3.943 14 C -0.626 4.626 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.552 5.552 18 Si 0.904 3.096 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.215 1.215 22 C -0.060 4.060 23 C -0.072 4.072 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.037 0.963 39 H -0.002 1.002 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.971 5.142 -18.187 20.921 hybrid contribution 0.021 -0.051 -1.675 1.676 sum -8.951 5.091 -19.862 22.372 Atomic orbital electron populations 1.21816 0.95229 1.01820 1.01487 1.21125 0.95400 0.99503 0.94983 0.91493 1.21598 0.95496 1.00724 0.97268 1.21518 0.95700 1.00626 0.97724 1.21618 1.00304 1.00013 0.93119 1.21579 0.95001 0.95354 0.90223 0.94623 1.62204 1.08302 1.53814 1.01738 1.22176 0.87274 0.99293 0.98076 1.22089 0.99116 0.95789 0.90376 1.62190 1.07073 1.54362 1.02076 1.19806 0.94816 0.92186 0.87455 1.21993 1.39736 1.09375 0.91479 0.92528 1.25853 0.94588 0.97261 1.01320 1.70762 1.36939 1.14052 1.33450 0.83455 0.76034 0.75078 0.75078 1.21461 1.21092 1.21472 1.21988 0.89036 0.98154 0.96793 1.22286 0.98915 0.96615 0.89360 1.21701 0.94351 1.01334 0.97225 0.92659 0.92678 0.92899 0.92303 0.91905 0.92240 0.91977 0.91931 0.91191 0.94524 0.90899 0.91250 0.95267 0.96301 1.00167 0.92296 0.95481 0.89566 0.94547 0.90753 0.91132 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.82 2.72 -90.62 -0.25 -1.07 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 5 C -0.12 -1.03 5.92 -26.74 -0.16 -1.19 16 6 C -0.11 -1.21 4.97 -26.73 -0.13 -1.34 16 7 C 0.09 1.07 1.94 -67.72 -0.13 0.94 16 8 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 9 N -0.54 -8.16 4.58 -226.48 -1.04 -9.19 16 10 C 0.06 0.94 5.32 -3.77 -0.02 0.92 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 N -0.53 -12.01 4.70 -235.91 -1.11 -13.11 16 13 C 0.18 4.88 4.03 -4.97 -0.02 4.86 16 14 C -0.59 -16.95 8.47 -34.44 -0.29 -17.24 16 15 H 0.06 1.63 7.13 -52.48 -0.37 1.26 16 16 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 17 N -0.92 -28.31 13.65 55.43 0.76 -27.55 16 18 Si 1.08 25.66 29.90 -169.99 -5.08 20.58 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 23 C 0.06 0.93 5.23 -3.76 -0.02 0.91 16 24 C -0.11 -1.19 4.13 -26.73 -0.11 -1.30 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.99 6.14 -51.93 -0.32 0.68 16 36 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 39 H -0.02 -0.55 7.99 -51.93 -0.41 -0.96 16 40 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.09 6.06 -51.93 -0.31 0.78 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.74 6.28 -51.93 -0.33 0.41 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -30.51 339.83 -11.11 -41.62 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.69 Total: -3.74 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.07 Total: -13.72 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -1.39 Total: -49.86 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.51 -11.11 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.123 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds