Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47244 * 2 1 4 4 C 1.53000 * 109.47635 * 239.99704 * 2 1 3 5 5 C 1.52993 * 109.47177 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47610 * 59.99860 * 5 4 2 7 7 C 1.53000 * 109.46964 * 300.00270 * 6 5 4 8 8 H 1.08999 * 109.47046 * 299.99236 * 7 6 5 9 9 N 1.46902 * 109.47144 * 179.97438 * 7 6 5 10 10 C 1.46963 * 110.99996 * 59.99841 * 9 7 6 11 11 C 1.53045 * 109.36352 * 183.19019 * 10 9 7 12 12 N 1.46957 * 109.36439 * 301.59704 * 11 10 9 13 13 C 1.46904 * 110.99711 * 183.19065 * 12 11 10 14 14 C 1.50703 * 109.46874 * 170.00041 * 13 12 11 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.46947 * 110.88115 * 59.32501 * 12 11 10 23 23 C 1.46957 * 111.00091 * 183.79744 * 9 7 6 24 24 C 1.52992 * 109.47387 * 59.99789 * 7 6 5 25 25 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47607 * 300.00600 * 1 2 3 27 27 H 1.09006 * 109.46670 * 60.00555 * 1 2 3 28 28 H 1.08998 * 109.46708 * 59.99953 * 4 2 1 29 29 H 1.09002 * 109.46711 * 300.00036 * 4 2 1 30 30 H 1.09002 * 109.47176 * 299.99563 * 5 4 2 31 31 H 1.09003 * 109.46983 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47306 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47094 * 59.99652 * 6 5 4 34 34 H 1.08995 * 109.48964 * 63.21635 * 10 9 7 35 35 H 1.09005 * 109.50617 * 303.16763 * 10 9 7 36 36 H 1.09001 * 109.48601 * 181.63109 * 11 10 9 37 37 H 1.09000 * 109.49146 * 61.56972 * 11 10 9 38 38 H 1.09003 * 109.47066 * 50.00318 * 13 12 11 39 39 H 1.08996 * 109.47319 * 289.99791 * 13 12 11 40 40 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 41 41 H 1.09001 * 109.49489 * 60.64422 * 22 12 11 42 42 H 1.08999 * 109.48983 * 180.71429 * 22 12 11 43 43 H 1.09004 * 109.48756 * 296.77647 * 23 9 7 44 44 H 1.08997 * 109.48797 * 56.82525 * 23 9 7 45 45 H 1.08999 * 109.47479 * 59.99712 * 24 7 6 46 46 H 1.08998 * 109.47359 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2487 6 6 4.0796 -1.4432 0.0005 7 6 3.5694 -0.7220 1.2497 8 1 3.9331 0.3056 1.2499 9 7 4.0581 -1.4150 2.4492 10 6 5.5272 -1.4356 2.4838 11 6 5.9950 -2.2330 3.7035 12 7 5.4508 -1.6210 4.9237 13 6 5.9396 -2.3142 6.1232 14 6 5.5664 -1.5207 7.3489 15 1 5.0211 -0.5940 7.2470 16 6 5.9221 -1.9772 8.6003 17 7 6.5865 -3.1054 8.7245 18 14 5.4589 -0.9941 10.1196 19 1 6.5439 -0.0306 10.4356 20 1 5.2670 -1.9170 11.2670 21 1 4.1977 -0.2529 9.8642 22 6 3.9819 -1.6005 4.8892 23 6 3.5140 -0.8030 3.6695 24 6 2.0395 -0.7215 1.2493 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6768 -0.2075 -2.1391 29 1 1.6768 -1.7490 -1.2491 30 1 3.9337 0.3058 -1.2486 31 1 3.9334 -1.2353 -2.1389 32 1 5.1696 -1.4440 0.0005 33 1 3.7159 -2.4708 0.0004 34 1 5.9037 -0.4149 2.5504 35 1 5.9062 -1.9043 1.5756 36 1 7.0841 -2.2251 3.7472 37 1 5.6414 -3.2610 3.6233 38 1 7.0239 -2.4119 6.0699 39 1 5.4878 -3.3045 6.1801 40 1 6.8266 -3.6160 7.9355 41 1 3.6053 -2.6213 4.8225 42 1 3.6033 -1.1315 5.7973 43 1 3.8677 0.2249 3.7496 44 1 2.4249 -0.8106 3.6255 45 1 1.6758 -1.7490 1.2491 46 1 1.6761 -0.2072 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078527234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -36.774757 kcal Electronic energy + Delta-G solvation = -21267.035235 eV Core-core repulsion = 18382.288638 eV Total energy + Delta-G solvation = -2884.746596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91027 -39.09747 -36.49938 -34.74337 -33.29616 -31.96095 -31.03514 -28.68062 -27.33285 -26.27383 -24.67628 -23.81903 -22.66300 -21.69930 -20.73471 -20.60224 -18.94681 -17.53339 -16.26667 -16.14569 -15.95685 -15.74909 -15.70516 -15.42508 -15.36549 -15.10294 -14.47551 -14.12050 -14.05818 -13.68658 -13.48140 -13.25946 -13.07904 -13.00161 -12.67426 -12.52007 -12.32909 -12.21684 -12.09978 -11.92967 -11.91648 -11.79502 -11.58958 -11.34610 -11.09336 -10.83661 -10.73527 -10.58666 -9.36914 -9.16067 -8.71052 -6.41655 1.52230 1.61728 1.79892 2.54397 2.80517 3.09089 3.16659 3.69563 3.77684 3.86434 4.05332 4.08324 4.18908 4.22875 4.25714 4.33433 4.37040 4.43992 4.53131 4.57205 4.60751 4.68467 4.72045 4.76837 4.77802 4.85251 4.87160 4.93957 5.00544 5.02336 5.07382 5.11585 5.17304 5.21203 5.31542 5.34746 5.40415 5.43879 5.61156 5.72899 5.92230 6.03066 6.17331 6.34271 6.38247 6.60238 7.39304 8.67881 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.003869 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.562731 B = 7235.508070 C = 7833.641231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.110 4.110 7 C 0.088 3.912 8 H 0.033 0.967 9 N -0.542 5.542 10 C 0.070 3.930 11 C 0.053 3.947 12 N -0.540 5.540 13 C 0.195 3.805 14 C -0.599 4.599 15 H 0.054 0.946 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.125 2.875 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.071 3.929 23 C 0.070 3.930 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.021 0.979 38 H -0.001 1.001 39 H -0.046 1.046 40 H 0.253 0.747 41 H 0.014 0.986 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 6.573 -21.479 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.020 4.020 8 H 0.051 0.949 9 N -0.268 5.268 10 C -0.058 4.058 11 C -0.075 4.075 12 N -0.265 5.265 13 C 0.068 3.932 14 C -0.637 4.637 15 H 0.073 0.927 16 C -0.235 4.235 17 N -0.575 5.575 18 Si 0.946 3.054 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.057 4.057 23 C -0.058 4.058 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.017 0.983 39 H -0.028 1.028 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.083 6.591 -19.854 23.223 hybrid contribution 0.370 -0.539 -1.240 1.402 sum -9.712 6.052 -21.095 23.999 Atomic orbital electron populations 1.21798 0.94414 1.01953 1.02011 1.21101 0.96057 0.99248 0.94250 0.91430 1.21593 0.95145 1.00733 0.97408 1.21499 0.95969 1.00627 0.97050 1.21601 1.00274 0.99697 0.93177 1.21685 0.95893 0.95032 0.89377 0.94875 1.62219 1.07867 1.54402 1.02268 1.22093 0.87816 0.98626 0.97260 1.22196 0.99218 0.95856 0.90245 1.62146 1.08448 1.53963 1.01931 1.19518 0.93391 0.91067 0.89233 1.22283 1.39492 1.09368 0.92544 0.92737 1.27477 0.93640 0.97351 1.04998 1.70898 1.38634 1.15209 1.32755 0.82838 0.77048 0.74165 0.71387 1.19773 1.20730 1.19328 1.21969 0.87675 0.97926 0.98179 1.22112 1.00087 0.95320 0.88307 1.21677 0.93281 1.01135 0.98203 0.92727 0.92906 0.91680 0.90824 0.92059 0.91956 0.90684 0.91940 0.91808 0.94863 0.88144 0.91141 0.96055 0.98280 1.02832 0.93807 0.96749 0.91563 0.95022 0.88601 0.91846 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.09 -1.37 2.72 -10.79 -0.03 -1.40 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -1.53 5.20 30.59 0.16 -1.37 16 5 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 6 C -0.11 -2.09 4.97 30.59 0.15 -1.94 16 7 C 0.09 1.99 1.94 44.91 0.09 2.08 16 8 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 9 N -0.54 -15.85 4.58 -870.46 -3.98 -19.83 16 10 C 0.07 2.12 5.32 86.31 0.46 2.58 16 11 C 0.05 2.05 5.61 86.31 0.48 2.53 16 12 N -0.54 -24.96 4.70 -900.29 -4.23 -29.19 16 13 C 0.19 10.83 4.03 85.56 0.34 11.17 16 14 C -0.60 -35.34 8.47 25.60 0.22 -35.12 16 15 H 0.05 3.18 7.13 -2.91 -0.02 3.16 16 16 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 17 N -0.94 -59.29 13.65 21.45 0.29 -59.00 16 18 Si 1.13 51.30 29.90 68.60 2.05 53.35 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C 0.07 2.97 5.43 86.31 0.47 3.44 16 23 C 0.07 2.26 5.23 86.31 0.45 2.71 16 24 C -0.11 -2.11 4.13 30.59 0.13 -1.99 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.19 6.34 -2.39 -0.02 1.17 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 2.52 6.14 -2.38 -0.01 2.51 16 36 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.00 -0.05 7.89 -2.39 -0.02 -0.07 16 39 H -0.05 -2.75 7.99 -2.39 -0.02 -2.76 16 40 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 43 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.10 2.70 6.06 -2.39 -0.01 2.69 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.24 6.28 -2.39 -0.01 1.22 16 Total: -1.00 -66.61 339.83 -0.64 -67.25 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.01 Total: 9.27 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.23 Total: -21.85 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -7.92 Total: -108.02 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -66.61 -0.64 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.479 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds