Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47184 * 2 1 4 4 C 1.53006 * 109.47160 * 120.00050 * 2 1 3 5 5 C 1.52992 * 109.47032 * 60.00309 * 4 2 1 6 6 C 1.53003 * 109.47504 * 59.99909 * 5 4 2 7 7 C 1.52996 * 109.46987 * 300.00137 * 6 5 4 8 8 H 1.08996 * 109.47237 * 299.99959 * 7 6 5 9 9 N 1.46902 * 109.47126 * 179.97438 * 7 6 5 10 10 C 1.46960 * 110.99996 * 183.79796 * 9 7 6 11 11 C 1.53048 * 109.36308 * 176.81250 * 10 9 7 12 12 N 1.46956 * 109.36366 * 58.40157 * 11 10 9 13 13 C 1.46902 * 110.99778 * 176.81091 * 12 11 10 14 14 C 1.50692 * 109.47341 * 58.99333 * 13 12 11 15 15 H 1.08001 * 119.99748 * 4.98649 * 14 13 12 16 16 C 1.37875 * 120.00405 * 184.98580 * 14 13 12 17 17 N 1.31517 * 120.00531 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99734 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47046 * 89.99836 * 18 16 14 20 20 H 1.48502 * 109.47060 * 209.99652 * 18 16 14 21 21 H 1.48495 * 109.46963 * 329.99853 * 18 16 14 22 22 C 1.46950 * 110.88222 * 300.67766 * 12 11 10 23 23 C 1.46956 * 110.99778 * 59.99896 * 9 7 6 24 24 C 1.53000 * 109.47315 * 240.00256 * 2 1 3 25 25 H 1.09007 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47187 * 60.00153 * 1 2 3 27 27 H 1.08995 * 109.47315 * 299.99794 * 1 2 3 28 28 H 1.09001 * 109.47054 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.46958 * 299.99774 * 4 2 1 30 30 H 1.09001 * 109.47262 * 299.99948 * 5 4 2 31 31 H 1.08999 * 109.47366 * 180.02562 * 5 4 2 32 32 H 1.08997 * 109.47133 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46830 * 59.99773 * 6 5 4 34 34 H 1.08997 * 109.49159 * 296.78087 * 10 9 7 35 35 H 1.08996 * 109.48830 * 56.84444 * 10 9 7 36 36 H 1.08998 * 109.49293 * 298.43529 * 11 10 9 37 37 H 1.08997 * 109.48574 * 178.36805 * 11 10 9 38 38 H 1.09006 * 109.46923 * 178.99817 * 13 12 11 39 39 H 1.09001 * 109.46974 * 298.98967 * 13 12 11 40 40 H 0.96994 * 120.00051 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.49115 * 299.35392 * 22 12 11 42 42 H 1.09000 * 109.51023 * 179.29529 * 22 12 11 43 43 H 1.08996 * 109.48983 * 303.15828 * 23 9 7 44 44 H 1.09002 * 109.48670 * 63.19889 * 23 9 7 45 45 H 1.08997 * 109.47327 * 59.99677 * 24 2 1 46 46 H 1.09001 * 109.47053 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1637 -1.2492 8 1 0.4401 -2.1637 -1.2493 9 7 2.0202 -2.8559 -2.4487 10 6 1.6246 -2.1390 -3.6691 11 6 2.2202 -2.8462 -4.8887 12 7 1.7495 -4.2379 -4.9229 13 6 2.2396 -4.9301 -6.1224 14 6 3.7463 -4.9080 -6.1347 15 1 4.2872 -4.4997 -5.2938 16 6 4.4344 -5.4089 -7.2194 17 7 5.7493 -5.3891 -7.2304 18 14 3.4987 -6.1144 -8.6742 19 1 3.2278 -5.0359 -9.6586 20 1 4.3116 -7.1782 -9.3167 21 1 2.2131 -6.6897 -8.2039 22 6 2.1450 -4.9548 -3.7026 23 6 1.5495 -4.2476 -2.4829 24 6 2.0400 -0.7212 -1.2493 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 3.1300 -0.7209 1.2495 29 1 1.6767 -0.2074 2.1392 30 1 0.4401 -2.1638 1.2492 31 1 1.8930 -2.6775 2.1394 32 1 1.6764 -3.9125 -0.0003 33 1 3.1301 -2.8849 0.0000 34 1 0.5376 -2.1294 -3.7490 35 1 1.9954 -1.1149 -3.6255 36 1 3.3080 -2.8319 -4.8223 37 1 1.9042 -2.3330 -5.7969 38 1 1.8914 -5.9630 -6.1136 39 1 1.8615 -4.4268 -7.0122 40 1 6.2333 -5.7412 -7.9937 41 1 3.2320 -4.9644 -3.6227 42 1 1.7745 -5.9790 -3.7459 43 1 1.8655 -4.7608 -1.5747 44 1 0.4616 -4.2620 -2.5490 45 1 1.6767 -0.2074 -2.1392 46 1 3.1300 -0.7208 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078527239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -25.845733 kcal Electronic energy + Delta-G solvation = -21605.382667 eV Core-core repulsion = 18721.109988 eV Total energy + Delta-G solvation = -2884.272678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97418 -39.20995 -36.35993 -34.43408 -32.87313 -31.72677 -31.24350 -29.12493 -27.65837 -26.36975 -24.69266 -23.47068 -22.61099 -22.12330 -20.66668 -19.47070 -18.87116 -17.68042 -16.55560 -15.98167 -15.94134 -15.86671 -15.70896 -15.48614 -14.95872 -14.74264 -14.51120 -14.25623 -13.99944 -13.73330 -13.58007 -13.36167 -12.98099 -12.78412 -12.65913 -12.42034 -12.22779 -12.11765 -12.09686 -11.94226 -11.86618 -11.74086 -11.66121 -11.42394 -11.18280 -10.93809 -10.79367 -10.68125 -9.21268 -8.99054 -8.31472 -6.36947 1.35135 1.36429 1.48925 2.33565 2.92127 3.03280 3.30807 3.74228 3.81866 3.97434 4.13147 4.19705 4.24837 4.34235 4.39156 4.48394 4.48862 4.51280 4.53913 4.58346 4.66674 4.71330 4.81113 4.86756 4.94556 4.98779 5.01662 5.04023 5.12354 5.14858 5.15753 5.17801 5.19080 5.28433 5.30989 5.39385 5.44941 5.48062 5.50679 5.66130 6.06008 6.15630 6.27147 6.38131 6.40185 6.70198 7.29780 8.85064 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039532 B = 0.004093 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.122601 B = 6839.266591 C = 6894.345451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.090 3.910 8 H 0.045 0.955 9 N -0.552 5.552 10 C 0.070 3.930 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.161 3.839 14 C -0.548 4.548 15 H 0.032 0.968 16 C 0.010 3.990 17 N -0.948 5.948 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.246 1.246 22 C 0.063 3.937 23 C 0.070 3.930 24 C -0.108 4.108 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.014 0.986 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.012 0.988 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 9.271 16.229 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.017 4.017 8 H 0.063 0.937 9 N -0.277 5.277 10 C -0.058 4.058 11 C -0.064 4.064 12 N -0.254 5.254 13 C 0.033 3.967 14 C -0.587 4.587 15 H 0.050 0.950 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.170 1.170 22 C -0.066 4.066 23 C -0.058 4.058 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.032 0.968 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.691 9.224 16.132 22.503 hybrid contribution 0.638 -0.541 -1.122 1.399 sum -12.054 8.683 15.010 21.118 Atomic orbital electron populations 1.21921 0.94789 1.01957 1.01884 1.21080 0.96296 0.99132 0.94045 0.90585 1.21568 1.00381 0.95492 0.97618 1.21529 1.01157 0.95656 0.96791 1.21609 1.00748 0.98918 0.93687 1.21674 0.96880 0.94006 0.89163 0.93749 1.62124 1.60757 1.02313 1.02494 1.22106 0.97792 0.97479 0.88398 1.21961 0.97122 0.89540 0.97791 1.62660 1.57566 1.02501 1.02674 1.20026 0.91889 0.94603 0.90182 1.21874 0.92719 1.40396 1.03733 0.95013 1.25947 0.95537 0.95580 1.01699 1.70090 1.08460 1.48014 1.32307 0.85643 0.79406 0.78642 0.78807 1.19117 1.20969 1.16993 1.21985 0.97378 0.97323 0.89870 1.22102 0.97324 0.89026 0.97321 1.21654 1.00528 0.94000 0.98367 0.92525 0.93057 0.91697 0.92533 0.90677 0.91164 0.91109 0.91996 0.92702 0.94088 0.89375 0.96797 0.91258 0.95263 0.95171 0.92524 0.96962 0.90977 0.89261 0.94039 0.92041 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.50 71.98 0.61 -1.59 16 2 C -0.09 -1.43 3.19 -10.79 -0.03 -1.46 16 3 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 4 C -0.11 -1.74 5.45 30.59 0.17 -1.57 16 5 C -0.11 -1.83 5.65 30.59 0.17 -1.66 16 6 C -0.11 -2.40 4.97 30.59 0.15 -2.25 16 7 C 0.09 2.14 1.67 44.91 0.07 2.22 16 8 H 0.04 1.03 6.43 -2.39 -0.02 1.02 16 9 N -0.55 -17.10 4.58 -870.48 -3.98 -21.08 16 10 C 0.07 2.24 5.23 86.31 0.45 2.69 16 11 C 0.06 2.64 5.24 86.31 0.45 3.09 16 12 N -0.53 -22.75 4.92 -900.31 -4.43 -27.18 16 13 C 0.16 7.85 4.21 85.55 0.36 8.21 16 14 C -0.55 -31.97 8.21 25.60 0.21 -31.76 16 15 H 0.03 2.10 6.07 -2.91 -0.02 2.08 16 16 C 0.01 0.60 5.47 84.65 0.46 1.06 16 17 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 18 Si 0.95 44.51 27.37 68.60 1.88 46.39 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.72 6.69 99.48 0.67 -10.05 16 22 C 0.06 2.54 5.32 86.31 0.46 3.00 16 23 C 0.07 2.21 5.32 86.31 0.46 2.67 16 24 C -0.11 -2.34 4.38 30.60 0.13 -2.20 16 25 H 0.06 0.89 4.81 -2.38 -0.01 0.88 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.05 6.43 -2.39 -0.02 1.03 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.32 6.34 -2.39 -0.02 1.31 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 2.53 6.06 -2.39 -0.01 2.52 16 36 H 0.01 0.67 6.62 -2.39 -0.02 0.66 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.03 1.42 7.52 -2.38 -0.02 1.40 16 39 H 0.03 1.44 7.29 -2.39 -0.02 1.43 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.01 0.58 6.78 -2.39 -0.02 0.57 16 42 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 43 H 0.09 2.50 6.14 -2.39 -0.01 2.49 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.35 6.28 -2.39 -0.01 1.33 16 46 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.99 327.28 -1.21 -67.21 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.89 Total: 14.10 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.13 Total: -19.55 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -8.11 Total: -108.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -65.99 -1.21 -67.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.362 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds