Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46988 * 2 1 4 4 C 1.52995 * 109.47261 * 120.00174 * 2 1 3 5 5 C 1.53004 * 109.47477 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46901 * 299.99835 * 5 4 2 7 7 C 1.53004 * 109.46801 * 59.99686 * 6 5 4 8 8 H 1.09000 * 109.47208 * 60.00443 * 7 6 5 9 9 N 1.46906 * 109.46574 * 180.02562 * 7 6 5 10 10 C 1.46950 * 111.00162 * 58.80312 * 9 7 6 11 11 C 1.53047 * 109.36254 * 176.80870 * 10 9 7 12 12 N 1.46954 * 109.36659 * 58.40254 * 11 10 9 13 13 C 1.46896 * 111.00529 * 176.80980 * 12 11 10 14 14 C 1.50705 * 109.46963 * 58.97422 * 13 12 11 15 15 H 1.07998 * 120.00220 * 5.01494 * 14 13 12 16 16 C 1.37874 * 120.00061 * 185.01252 * 14 13 12 17 17 N 1.31516 * 120.00373 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47231 * 59.99877 * 18 16 14 20 20 H 1.48501 * 109.47211 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99963 * 18 16 14 22 22 C 1.46959 * 110.88064 * 300.67683 * 12 11 10 23 23 C 1.46957 * 110.99791 * 294.99913 * 9 7 6 24 24 C 1.52997 * 109.47429 * 240.00199 * 2 1 3 25 25 H 1.08992 * 109.47744 * 299.99788 * 1 2 3 26 26 H 1.09004 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47414 * 60.00436 * 1 2 3 28 28 H 1.09002 * 109.47083 * 299.99908 * 4 2 1 29 29 H 1.09000 * 109.47262 * 59.99994 * 4 2 1 30 30 H 1.09000 * 109.47295 * 59.99505 * 5 4 2 31 31 H 1.08997 * 109.47231 * 180.02562 * 5 4 2 32 32 H 1.08990 * 109.47303 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46904 * 300.00476 * 6 5 4 34 34 H 1.08997 * 109.49169 * 296.77647 * 10 9 7 35 35 H 1.09004 * 109.48761 * 56.84234 * 10 9 7 36 36 H 1.09002 * 109.49334 * 298.43301 * 11 10 9 37 37 H 1.09000 * 109.50624 * 178.37997 * 11 10 9 38 38 H 1.08996 * 109.47883 * 178.97797 * 13 12 11 39 39 H 1.09006 * 109.47273 * 298.98000 * 13 12 11 40 40 H 0.96993 * 120.00734 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.48716 * 299.35532 * 22 12 11 42 42 H 1.08993 * 109.49398 * 179.28524 * 22 12 11 43 43 H 1.09004 * 109.49004 * 303.15826 * 23 9 7 44 44 H 1.08999 * 109.48960 * 63.22779 * 23 9 7 45 45 H 1.09004 * 109.47366 * 299.99875 * 24 2 1 46 46 H 1.09001 * 109.47454 * 60.00036 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 3.5704 -0.7204 -1.2490 8 1 3.9334 0.3074 -1.2488 9 7 4.0601 -1.4129 -2.4484 10 6 3.6125 -2.8125 -2.4681 11 6 4.0749 -3.4749 -3.7680 12 7 5.5390 -3.3918 -3.8633 13 6 6.0287 -4.0843 -5.0627 14 6 5.4083 -3.4652 -6.2887 15 1 4.7833 -2.5895 -6.1940 16 6 5.6386 -4.0166 -7.5311 17 7 6.3993 -5.0832 -7.6465 18 14 4.8702 -3.2488 -9.0508 19 1 5.3395 -1.8465 -9.1881 20 1 5.2697 -4.0238 -10.2529 21 1 3.3911 -3.2652 -8.9196 22 6 5.9866 -1.9922 -3.8437 23 6 5.5242 -1.3298 -2.5437 24 6 2.0400 -0.7212 -1.2492 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 1.6766 -0.2074 2.1392 29 1 1.6766 -1.7489 1.2492 30 1 3.9330 0.3071 1.2497 31 1 3.9333 -1.2350 2.1393 32 1 5.1704 -1.4409 0.0002 33 1 3.7174 -2.4694 0.0000 34 1 4.0402 -3.3431 -1.6175 35 1 2.5246 -2.8472 -2.4092 36 1 3.6254 -2.9611 -4.6179 37 1 3.7689 -4.5210 -3.7723 38 1 7.1133 -3.9920 -5.1183 39 1 5.7560 -5.1384 -5.0105 40 1 6.5611 -5.4714 -8.5205 41 1 5.5589 -1.4617 -4.6943 42 1 7.0744 -1.9574 -3.9025 43 1 5.8301 -0.2836 -2.5398 44 1 5.9737 -1.8436 -1.6939 45 1 1.6767 -1.7489 -1.2493 46 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078527245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = -14.199736 kcal Electronic energy + Delta-G solvation = -21522.725403 eV Core-core repulsion = 18638.957733 eV Total energy + Delta-G solvation = -2883.767670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85683 -37.64993 -34.89870 -32.54332 -32.04757 -30.39284 -29.74970 -26.99207 -26.45357 -24.72948 -23.04996 -22.06220 -21.95234 -20.70894 -19.73123 -18.54494 -16.29166 -15.94083 -15.11714 -14.95553 -14.62615 -14.57795 -14.16582 -14.06361 -13.80666 -13.47775 -13.24123 -12.80286 -12.66969 -12.43002 -11.90347 -11.82002 -11.78834 -11.55497 -11.16394 -11.10935 -10.98186 -10.83252 -10.65940 -10.55080 -10.48355 -10.31544 -10.21509 -10.08898 -9.87983 -9.76135 -9.44814 -8.39395 -7.88992 -7.11155 -5.98759 -4.07673 3.31859 3.36279 3.39509 4.14074 4.44245 4.56266 4.68959 4.82045 5.02551 5.05049 5.12448 5.27634 5.31436 5.34649 5.46777 5.48892 5.54606 5.55230 5.64618 5.69274 5.74239 5.81901 5.89260 5.92390 5.96055 6.02789 6.07828 6.09942 6.15161 6.20537 6.22947 6.33120 6.39562 6.47920 6.69337 6.83793 6.94491 7.27568 7.45210 7.50035 7.56250 7.94131 8.11083 8.34198 8.34670 9.03117 9.59025 11.06214 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031245 B = 0.004275 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.919855 B = 6548.854414 C = 7010.246786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.153 4.153 7 C 0.087 3.913 8 H 0.076 0.924 9 N -0.531 5.531 10 C 0.055 3.945 11 C 0.065 3.935 12 N -0.543 5.543 13 C 0.187 3.813 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.064 3.936 23 C 0.058 3.942 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 9.299 16.825 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.192 4.192 7 C -0.022 4.022 8 H 0.094 0.906 9 N -0.254 5.254 10 C -0.073 4.073 11 C -0.064 4.064 12 N -0.268 5.268 13 C 0.061 3.939 14 C -0.586 4.586 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.065 4.065 23 C -0.070 4.070 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.053 9.150 16.662 20.645 hybrid contribution -0.325 0.329 -1.010 1.111 sum -8.378 9.479 15.652 20.126 Atomic orbital electron populations 1.21815 0.95343 1.01765 1.01434 1.21112 0.95295 0.99576 0.94964 0.91390 1.21603 0.95546 1.00633 0.97346 1.21462 0.95573 1.00506 0.97665 1.22239 1.00856 1.00467 0.95656 1.21701 0.95018 0.97868 0.87620 0.90622 1.62364 1.11270 1.14891 1.36860 1.22295 0.99126 0.87625 0.98282 1.21917 0.89900 0.99295 0.95286 1.62679 1.09410 1.12676 1.41995 1.19724 0.95524 0.94333 0.84279 1.21743 1.30957 1.13267 0.92663 0.92363 1.24959 0.95039 0.94803 0.98983 1.69935 1.37696 1.21344 1.24210 0.86705 0.79773 0.79361 0.82472 1.20277 1.21269 1.20259 1.21926 0.99170 0.90173 0.95263 1.22216 0.86990 0.99454 0.98309 1.21661 0.94448 1.00949 0.97318 0.92977 0.92748 0.92651 0.92370 0.92089 0.92212 0.92366 0.91877 0.91574 0.94583 0.91231 0.93363 0.91592 0.95578 0.94852 0.92818 0.93589 0.91594 0.91593 0.94568 0.91748 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.15 0.34 -0.87 16 2 C -0.09 -0.83 2.72 -90.63 -0.25 -1.08 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 5 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.15 -1.75 4.50 -26.73 -0.12 -1.87 16 7 C 0.09 1.08 2.23 -67.69 -0.15 0.93 16 8 H 0.08 0.94 8.11 -51.93 -0.42 0.51 16 9 N -0.53 -8.26 4.70 -226.46 -1.06 -9.33 16 10 C 0.05 0.89 4.81 -3.77 -0.02 0.87 16 11 C 0.06 1.31 5.24 -3.77 -0.02 1.29 16 12 N -0.54 -11.94 4.92 -235.91 -1.16 -13.10 16 13 C 0.19 4.90 5.14 -4.98 -0.03 4.88 16 14 C -0.55 -15.25 7.66 -34.44 -0.26 -15.52 16 15 H 0.06 1.63 5.82 -52.49 -0.31 1.32 16 16 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 C 0.06 1.27 5.32 -3.76 -0.02 1.25 16 23 C 0.06 0.94 5.25 -3.76 -0.02 0.92 16 24 C -0.11 -1.19 4.29 -26.71 -0.11 -1.31 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.77 6.59 -51.93 -0.34 0.43 16 33 H 0.07 0.82 6.45 -51.93 -0.34 0.48 16 34 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 35 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 36 H 0.05 1.09 6.62 -51.93 -0.34 0.74 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 44 H 0.04 0.58 6.60 -51.93 -0.34 0.24 16 45 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -28.74 334.90 -10.99 -39.74 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.48 Total: -2.13 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.05 Total: -11.14 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -1.49 Total: -48.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.74 -10.99 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.538 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds