Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46988 * 2 1 4 4 C 1.52995 * 109.47261 * 120.00174 * 2 1 3 5 5 C 1.53004 * 109.47477 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46901 * 299.99835 * 5 4 2 7 7 C 1.53004 * 109.46801 * 59.99686 * 6 5 4 8 8 H 1.09000 * 109.47208 * 60.00443 * 7 6 5 9 9 N 1.46906 * 109.46574 * 180.02562 * 7 6 5 10 10 C 1.46950 * 111.00162 * 58.80312 * 9 7 6 11 11 C 1.53047 * 109.36254 * 176.80870 * 10 9 7 12 12 N 1.46954 * 109.36659 * 58.40254 * 11 10 9 13 13 C 1.46896 * 111.00529 * 176.80980 * 12 11 10 14 14 C 1.50705 * 109.46963 * 58.97422 * 13 12 11 15 15 H 1.07998 * 120.00220 * 5.01494 * 14 13 12 16 16 C 1.37874 * 120.00061 * 185.01252 * 14 13 12 17 17 N 1.31516 * 120.00373 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47231 * 59.99877 * 18 16 14 20 20 H 1.48501 * 109.47211 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99963 * 18 16 14 22 22 C 1.46959 * 110.88064 * 300.67683 * 12 11 10 23 23 C 1.46957 * 110.99791 * 294.99913 * 9 7 6 24 24 C 1.52997 * 109.47429 * 240.00199 * 2 1 3 25 25 H 1.08992 * 109.47744 * 299.99788 * 1 2 3 26 26 H 1.09004 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47414 * 60.00436 * 1 2 3 28 28 H 1.09002 * 109.47083 * 299.99908 * 4 2 1 29 29 H 1.09000 * 109.47262 * 59.99994 * 4 2 1 30 30 H 1.09000 * 109.47295 * 59.99505 * 5 4 2 31 31 H 1.08997 * 109.47231 * 180.02562 * 5 4 2 32 32 H 1.08990 * 109.47303 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46904 * 300.00476 * 6 5 4 34 34 H 1.08997 * 109.49169 * 296.77647 * 10 9 7 35 35 H 1.09004 * 109.48761 * 56.84234 * 10 9 7 36 36 H 1.09002 * 109.49334 * 298.43301 * 11 10 9 37 37 H 1.09000 * 109.50624 * 178.37997 * 11 10 9 38 38 H 1.08996 * 109.47883 * 178.97797 * 13 12 11 39 39 H 1.09006 * 109.47273 * 298.98000 * 13 12 11 40 40 H 0.96993 * 120.00734 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.48716 * 299.35532 * 22 12 11 42 42 H 1.08993 * 109.49398 * 179.28524 * 22 12 11 43 43 H 1.09004 * 109.49004 * 303.15826 * 23 9 7 44 44 H 1.08999 * 109.48960 * 63.22779 * 23 9 7 45 45 H 1.09004 * 109.47366 * 299.99875 * 24 2 1 46 46 H 1.09001 * 109.47454 * 60.00036 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 3.5704 -0.7204 -1.2490 8 1 3.9334 0.3074 -1.2488 9 7 4.0601 -1.4129 -2.4484 10 6 3.6125 -2.8125 -2.4681 11 6 4.0749 -3.4749 -3.7680 12 7 5.5390 -3.3918 -3.8633 13 6 6.0287 -4.0843 -5.0627 14 6 5.4083 -3.4652 -6.2887 15 1 4.7833 -2.5895 -6.1940 16 6 5.6386 -4.0166 -7.5311 17 7 6.3993 -5.0832 -7.6465 18 14 4.8702 -3.2488 -9.0508 19 1 5.3395 -1.8465 -9.1881 20 1 5.2697 -4.0238 -10.2529 21 1 3.3911 -3.2652 -8.9196 22 6 5.9866 -1.9922 -3.8437 23 6 5.5242 -1.3298 -2.5437 24 6 2.0400 -0.7212 -1.2492 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 1.6766 -0.2074 2.1392 29 1 1.6766 -1.7489 1.2492 30 1 3.9330 0.3071 1.2497 31 1 3.9333 -1.2350 2.1393 32 1 5.1704 -1.4409 0.0002 33 1 3.7174 -2.4694 0.0000 34 1 4.0402 -3.3431 -1.6175 35 1 2.5246 -2.8472 -2.4092 36 1 3.6254 -2.9611 -4.6179 37 1 3.7689 -4.5210 -3.7723 38 1 7.1133 -3.9920 -5.1183 39 1 5.7560 -5.1384 -5.0105 40 1 6.5611 -5.4714 -8.5205 41 1 5.5589 -1.4617 -4.6943 42 1 7.0744 -1.9574 -3.9025 43 1 5.8301 -0.2836 -2.5398 44 1 5.9737 -1.8436 -1.6939 45 1 1.6767 -1.7489 -1.2493 46 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078527245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = -32.232525 kcal Electronic energy + Delta-G solvation = -21523.507363 eV Core-core repulsion = 18638.957733 eV Total energy + Delta-G solvation = -2884.549630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99439 -38.97036 -36.34523 -34.47149 -32.98917 -31.85526 -31.04760 -28.72346 -27.23340 -26.46981 -24.53718 -23.70716 -22.85787 -21.92751 -20.77175 -19.92992 -18.37473 -17.27251 -16.60064 -16.20545 -15.89155 -15.82439 -15.56304 -15.26064 -15.01571 -14.86270 -14.65596 -14.01496 -13.94797 -13.54077 -13.37931 -13.17233 -12.91164 -12.82368 -12.72326 -12.53529 -12.27478 -12.20723 -12.08245 -12.00343 -11.83744 -11.73678 -11.57205 -11.42815 -11.22842 -11.00531 -10.89387 -10.61283 -9.17270 -8.97479 -8.16062 -6.35806 1.36073 1.37666 1.46088 2.36860 2.97180 3.08308 3.38292 3.74217 3.87005 3.96825 4.13808 4.18073 4.24517 4.28793 4.38508 4.48294 4.51742 4.57009 4.59904 4.65037 4.70493 4.77851 4.82942 4.85976 4.90011 5.04485 5.09407 5.09983 5.13179 5.20115 5.23127 5.25019 5.25858 5.30987 5.35144 5.37702 5.44458 5.51501 5.63893 5.72638 6.03176 6.16673 6.17891 6.35329 6.52438 6.84748 7.35535 8.86264 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.031245 B = 0.004275 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.919855 B = 6548.854414 C = 7010.246786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.148 4.148 7 C 0.089 3.911 8 H 0.082 0.918 9 N -0.544 5.544 10 C 0.070 3.930 11 C 0.067 3.933 12 N -0.542 5.542 13 C 0.200 3.800 14 C -0.555 4.555 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.957 3.043 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.271 1.271 22 C 0.065 3.935 23 C 0.070 3.930 24 C -0.102 4.102 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.003 0.997 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 11.016 18.167 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.187 4.187 7 C -0.019 4.019 8 H 0.100 0.900 9 N -0.267 5.267 10 C -0.058 4.058 11 C -0.062 4.062 12 N -0.266 5.266 13 C 0.073 3.927 14 C -0.594 4.594 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.567 5.567 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.196 1.196 22 C -0.064 4.064 23 C -0.058 4.058 24 C -0.140 4.140 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.327 10.883 18.030 23.032 hybrid contribution 0.083 -0.211 -1.398 1.416 sum -9.243 10.672 16.632 21.816 Atomic orbital electron populations 1.21798 0.94598 1.01821 1.01991 1.21079 0.95881 0.99500 0.94007 0.90911 1.21591 0.95045 1.00561 0.97672 1.21439 0.95954 1.00677 0.96711 1.22166 1.00345 1.00013 0.96175 1.21773 0.95769 0.97733 0.86631 0.89968 1.62339 1.10777 1.14392 1.39229 1.22106 1.00040 0.87980 0.95707 1.21932 0.88424 0.99145 0.96721 1.62619 1.10653 1.13875 1.39434 1.19388 0.94056 0.93308 0.85910 1.21921 1.30850 1.13132 0.93524 0.92778 1.25808 0.95454 0.95225 1.02204 1.70054 1.38859 1.22609 1.25145 0.85621 0.78989 0.78613 0.78548 1.19576 1.20478 1.19573 1.21960 0.98985 0.88729 0.96728 1.22078 0.87609 1.00219 0.95894 1.21630 0.93462 1.00779 0.98140 0.91710 0.92961 0.92853 0.90831 0.92488 0.91466 0.91589 0.92577 0.92561 0.94123 0.89476 0.95969 0.92309 0.97915 0.97586 0.92555 0.96129 0.91867 0.89406 0.93962 0.92367 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.19 71.98 0.66 -1.38 16 2 C -0.09 -1.35 2.72 -10.80 -0.03 -1.38 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.62 5.20 30.59 0.16 -1.46 16 5 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 6 C -0.15 -3.05 4.50 30.60 0.14 -2.91 16 7 C 0.09 2.02 2.23 44.93 0.10 2.12 16 8 H 0.08 1.80 8.11 -2.39 -0.02 1.78 16 9 N -0.54 -16.23 4.70 -870.38 -4.09 -20.31 16 10 C 0.07 2.21 4.81 86.31 0.42 2.62 16 11 C 0.07 2.74 5.24 86.31 0.45 3.19 16 12 N -0.54 -24.46 4.92 -900.29 -4.43 -28.89 16 13 C 0.20 10.95 5.14 85.56 0.44 11.39 16 14 C -0.56 -31.82 7.66 25.60 0.20 -31.62 16 15 H 0.05 3.10 5.82 -2.91 -0.02 3.08 16 16 C 0.01 0.72 5.46 84.65 0.46 1.18 16 17 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 18 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 C 0.06 2.62 5.32 86.31 0.46 3.08 16 23 C 0.07 2.18 5.25 86.31 0.45 2.63 16 24 C -0.10 -2.09 4.29 30.61 0.13 -1.96 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.24 6.59 -2.39 -0.02 1.23 16 33 H 0.06 1.28 6.45 -2.39 -0.02 1.26 16 34 H 0.04 1.27 6.46 -2.39 -0.02 1.25 16 35 H 0.09 2.47 6.17 -2.39 -0.01 2.46 16 36 H 0.02 1.02 6.62 -2.39 -0.02 1.01 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 39 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.02 0.93 6.78 -2.39 -0.02 0.91 16 42 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 43 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 44 H 0.04 1.29 6.60 -2.39 -0.02 1.27 16 45 H 0.06 1.26 6.36 -2.39 -0.02 1.24 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.51 334.90 -1.07 -63.58 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.92 Total: 10.64 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.22 Total: -16.04 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -8.23 Total: -105.17 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.51 -1.07 -63.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.347 kcal (2) G-P(sol) polarization free energy of solvation -62.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds